Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]
Code Context
                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'CR15G00540' => array(
			'gene_id' => 'CR15G00540',
			'e_value' => '0.0',
			'bit_score' => '550',
			'alignment_length' => '273',
			'identity_percentage' => '100.00',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105800' => array(
			'gene_id' => 'VC00G105800',
			'e_value' => '3e-113',
			'bit_score' => '334',
			'alignment_length' => '243',
			'identity_percentage' => '76.54',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G63120' => array(
			'gene_id' => 'CV00G63120',
			'e_value' => '9e-106',
			'bit_score' => '314',
			'alignment_length' => '209',
			'identity_percentage' => '72.73',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_002G04430' => array(
			'gene_id' => 'CNC64A_002G04430',
			'e_value' => '2e-104',
			'bit_score' => '311',
			'alignment_length' => '215',
			'identity_percentage' => '72.56',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G18340' => array(
			'gene_id' => 'AP00G18340',
			'e_value' => '2e-99',
			'bit_score' => '297',
			'alignment_length' => '205',
			'identity_percentage' => '68.78',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G24210' => array(
			'gene_id' => 'HE0000G24210',
			'e_value' => '6e-99',
			'bit_score' => '298',
			'alignment_length' => '257',
			'identity_percentage' => '62.26',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_04G02020' => array(
			'gene_id' => 'BPRRCC1105_04G02020',
			'e_value' => '1e-93',
			'bit_score' => '286',
			'alignment_length' => '202',
			'identity_percentage' => '66.83',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP09G02920' => array(
			'gene_id' => 'MP09G02920',
			'e_value' => '2e-93',
			'bit_score' => '285',
			'alignment_length' => '206',
			'identity_percentage' => '67.96',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_13G00520' => array(
			'gene_id' => 'ORCC809_13G00520',
			'e_value' => '2e-92',
			'bit_score' => '280',
			'alignment_length' => '227',
			'identity_percentage' => '61.23',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL21G00500' => array(
			'gene_id' => 'OL21G00500',
			'e_value' => '3e-92',
			'bit_score' => '280',
			'alignment_length' => '202',
			'identity_percentage' => '64.85',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL13G02500' => array(
			'gene_id' => 'OL13G02500',
			'e_value' => '3e-92',
			'bit_score' => '280',
			'alignment_length' => '202',
			'identity_percentage' => '64.85',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_06G02830' => array(
			'gene_id' => 'MRCC299_06G02830',
			'e_value' => '5e-92',
			'bit_score' => '280',
			'alignment_length' => '270',
			'identity_percentage' => '57.78',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_08G01820' => array(
			'gene_id' => 'OM_08G01820',
			'e_value' => '2e-90',
			'bit_score' => '275',
			'alignment_length' => '211',
			'identity_percentage' => '61.61',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11450' => array(
			'gene_id' => 'AC00G11450',
			'e_value' => '5e-90',
			'bit_score' => '275',
			'alignment_length' => '223',
			'identity_percentage' => '62.33',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_13G02650' => array(
			'gene_id' => 'OT_13G02650',
			'e_value' => '3e-88',
			'bit_score' => '269',
			'alignment_length' => '216',
			'identity_percentage' => '60.19',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00068G01090' => array(
			'gene_id' => 'PP00068G01090',
			'e_value' => '3e-87',
			'bit_score' => '267',
			'alignment_length' => '224',
			'identity_percentage' => '59.82',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00226G00370' => array(
			'gene_id' => 'PP00226G00370',
			'e_value' => '9e-83',
			'bit_score' => '255',
			'alignment_length' => '218',
			'identity_percentage' => '57.34',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00062G00960' => array(
			'gene_id' => 'ATR_00062G00960',
			'e_value' => '1e-81',
			'bit_score' => '253',
			'alignment_length' => '224',
			'identity_percentage' => '55.36',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G03570' => array(
			'gene_id' => 'PI00G03570',
			'e_value' => '1e-81',
			'bit_score' => '252',
			'alignment_length' => '207',
			'identity_percentage' => '57.97',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.05g04730' => array(
			'gene_id' => 'RCC4223.05g04730',
			'e_value' => '2e-81',
			'bit_score' => '251',
			'alignment_length' => '207',
			'identity_percentage' => '58.45',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G63520' => array(
			'gene_id' => 'OS03G63520',
			'e_value' => '6e-78',
			'bit_score' => '243',
			'alignment_length' => '248',
			'identity_percentage' => '50.81',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G04860' => array(
			'gene_id' => 'AT4G04860',
			'e_value' => '3e-76',
			'bit_score' => '239',
			'alignment_length' => '228',
			'identity_percentage' => '52.19',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G21810' => array(
			'gene_id' => 'AT4G21810',
			'e_value' => '3e-73',
			'bit_score' => '231',
			'alignment_length' => '228',
			'identity_percentage' => '51.75',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs173810' => array(
			'gene_id' => 'phs173810',
			'e_value' => '6e-73',
			'bit_score' => '230',
			'alignment_length' => '248',
			'identity_percentage' => '49.19',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100004g172' => array(
			'gene_id' => 'Naga_100004g172',
			'e_value' => '3e-71',
			'bit_score' => '229',
			'alignment_length' => '245',
			'identity_percentage' => '50.61',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh659390' => array(
			'gene_id' => 'emh659390',
			'e_value' => '8e-69',
			'bit_score' => '219',
			'alignment_length' => '213',
			'identity_percentage' => '55.40',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP06G07000' => array(
			'gene_id' => 'TP06G07000',
			'e_value' => '2e-68',
			'bit_score' => '218',
			'alignment_length' => '204',
			'identity_percentage' => '52.45',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0023G00650' => array(
			'gene_id' => 'AA0023G00650',
			'e_value' => '2e-68',
			'bit_score' => '216',
			'alignment_length' => '189',
			'identity_percentage' => '55.03',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_12G00180' => array(
			'gene_id' => 'PTI_12G00180',
			'e_value' => '1e-61',
			'bit_score' => '201',
			'alignment_length' => '206',
			'identity_percentage' => '47.09',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC027G02270' => array(
			'gene_id' => 'FC027G02270',
			'e_value' => '2e-61',
			'bit_score' => '200',
			'alignment_length' => '198',
			'identity_percentage' => '49.49',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0038438' => array(
			'gene_id' => 'FBgn0038438',
			'e_value' => '4e-59',
			'bit_score' => '195',
			'alignment_length' => '200',
			'identity_percentage' => '47.00',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu16030' => array(
			'gene_id' => 'gsu16030',
			'e_value' => '5e-59',
			'bit_score' => '193',
			'alignment_length' => '177',
			'identity_percentage' => '55.93',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0334G00070' => array(
			'gene_id' => 'ES0334G00070',
			'e_value' => '2e-56',
			'bit_score' => '188',
			'alignment_length' => '214',
			'identity_percentage' => '47.20',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000009092' => array(
			'gene_id' => 'ENSMUSG00000009092',
			'e_value' => '2e-55',
			'bit_score' => '184',
			'alignment_length' => '222',
			'identity_percentage' => '47.75',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM11G01620' => array(
			'gene_id' => 'CM11G01620',
			'e_value' => '3e-55',
			'bit_score' => '184',
			'alignment_length' => '218',
			'identity_percentage' => '48.62',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000099958' => array(
			'gene_id' => 'ENSG00000099958',
			'e_value' => '8e-55',
			'bit_score' => '183',
			'alignment_length' => '196',
			'identity_percentage' => '51.02',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000274437' => array(
			'gene_id' => 'ENSG00000274437',
			'e_value' => '8e-55',
			'bit_score' => '183',
			'alignment_length' => '196',
			'identity_percentage' => '51.02',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh645640' => array(
			'gene_id' => 'emh645640',
			'e_value' => '2e-54',
			'bit_score' => '181',
			'alignment_length' => '166',
			'identity_percentage' => '56.02',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0285131' => array(
			'gene_id' => 'DDB_G0285131',
			'e_value' => '2e-52',
			'bit_score' => '177',
			'alignment_length' => '210',
			'identity_percentage' => '43.81',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00020109' => array(
			'gene_id' => 'WBGene00020109',
			'e_value' => '5e-48',
			'bit_score' => '166',
			'alignment_length' => '222',
			'identity_percentage' => '45.95',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G29330' => array(
			'gene_id' => 'AT4G29330',
			'e_value' => '5e-38',
			'bit_score' => '140',
			'alignment_length' => '197',
			'identity_percentage' => '37.06',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_07G00150' => array(
			'gene_id' => 'BPRRCC1105_07G00150',
			'e_value' => '1e-36',
			'bit_score' => '136',
			'alignment_length' => '241',
			'identity_percentage' => '34.85',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS05G09550' => array(
			'gene_id' => 'OS05G09550',
			'e_value' => '2e-36',
			'bit_score' => '135',
			'alignment_length' => '220',
			'identity_percentage' => '35.45',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00213G00320' => array(
			'gene_id' => 'PP00213G00320',
			'e_value' => '4e-36',
			'bit_score' => '134',
			'alignment_length' => '215',
			'identity_percentage' => '35.35',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs171120' => array(
			'gene_id' => 'phs171120',
			'e_value' => '8e-36',
			'bit_score' => '134',
			'alignment_length' => '215',
			'identity_percentage' => '37.21',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G88370' => array(
			'gene_id' => 'AC00G88370',
			'e_value' => '2e-34',
			'bit_score' => '129',
			'alignment_length' => '196',
			'identity_percentage' => '37.24',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh750850' => array(
			'gene_id' => 'emh750850',
			'e_value' => '1e-33',
			'bit_score' => '128',
			'alignment_length' => '198',
			'identity_percentage' => '38.38',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_01G00860' => array(
			'gene_id' => 'MRCC299_01G00860',
			'e_value' => '1e-33',
			'bit_score' => '129',
			'alignment_length' => '185',
			'identity_percentage' => '37.30',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G18750' => array(
			'gene_id' => 'CV00G18750',
			'e_value' => '7e-33',
			'bit_score' => '126',
			'alignment_length' => '220',
			'identity_percentage' => '35.91',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G18770' => array(
			'gene_id' => 'CV00G18770',
			'e_value' => '8e-33',
			'bit_score' => '126',
			'alignment_length' => '220',
			'identity_percentage' => '35.91',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00056G01300' => array(
			'gene_id' => 'ATR_00056G01300',
			'e_value' => '1e-32',
			'bit_score' => '125',
			'alignment_length' => '222',
			'identity_percentage' => '35.59',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_03G06050' => array(
			'gene_id' => 'OT_03G06050',
			'e_value' => '2e-32',
			'bit_score' => '125',
			'alignment_length' => '227',
			'identity_percentage' => '34.80',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_07G04780' => array(
			'gene_id' => 'OM_07G04780',
			'e_value' => '5e-32',
			'bit_score' => '124',
			'alignment_length' => '201',
			'identity_percentage' => '35.82',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP01G00760' => array(
			'gene_id' => 'MP01G00760',
			'e_value' => '8e-32',
			'bit_score' => '123',
			'alignment_length' => '189',
			'identity_percentage' => '37.04',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_06G06880' => array(
			'gene_id' => 'ORCC809_06G06880',
			'e_value' => '5e-28',
			'bit_score' => '113',
			'alignment_length' => '225',
			'identity_percentage' => '32.89',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL03G05850' => array(
			'gene_id' => 'OL03G05850',
			'e_value' => '3e-26',
			'bit_score' => '107',
			'alignment_length' => '202',
			'identity_percentage' => '33.66',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G24270' => array(
			'gene_id' => 'PI00G24270',
			'e_value' => '1e-25',
			'bit_score' => '106',
			'alignment_length' => '231',
			'identity_percentage' => '30.30',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G131550' => array(
			'gene_id' => 'VC00G131550',
			'e_value' => '2e-25',
			'bit_score' => '106',
			'alignment_length' => '248',
			'identity_percentage' => '32.26',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100030g4' => array(
			'gene_id' => 'Naga_100030g4',
			'e_value' => '5e-25',
			'bit_score' => '105',
			'alignment_length' => '173',
			'identity_percentage' => '36.42',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR12G08730' => array(
			'gene_id' => 'CR12G08730',
			'e_value' => '3e-24',
			'bit_score' => '103',
			'alignment_length' => '190',
			'identity_percentage' => '33.68',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.04g01340' => array(
			'gene_id' => 'RCC4223.04g01340',
			'e_value' => '4e-24',
			'bit_score' => '102',
			'alignment_length' => '231',
			'identity_percentage' => '29.87',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0031376' => array(
			'gene_id' => 'FBgn0031376',
			'e_value' => '5e-22',
			'bit_score' => '96.3',
			'alignment_length' => '243',
			'identity_percentage' => '28.40',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM09G01590' => array(
			'gene_id' => 'CM09G01590',
			'e_value' => '5e-21',
			'bit_score' => '94.0',
			'alignment_length' => '251',
			'identity_percentage' => '28.69',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000022365' => array(
			'gene_id' => 'ENSMUSG00000022365',
			'e_value' => '1e-20',
			'bit_score' => '92.8',
			'alignment_length' => '231',
			'identity_percentage' => '30.30',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0288833' => array(
			'gene_id' => 'DDB_G0288833',
			'e_value' => '1e-20',
			'bit_score' => '92.4',
			'alignment_length' => '241',
			'identity_percentage' => '26.14',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC1687.17c' => array(
			'gene_id' => 'SPAC1687.17c',
			'e_value' => '5e-20',
			'bit_score' => '89.7',
			'alignment_length' => '180',
			'identity_percentage' => '29.44',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00000843' => array(
			'gene_id' => 'WBGene00000843',
			'e_value' => '6e-20',
			'bit_score' => '90.5',
			'alignment_length' => '192',
			'identity_percentage' => '29.69',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100786g2' => array(
			'gene_id' => 'Naga_100786g2',
			'e_value' => '1e-18',
			'bit_score' => '89.0',
			'alignment_length' => '179',
			'identity_percentage' => '31.28',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte104470' => array(
			'gene_id' => 'pte104470',
			'e_value' => '1e-17',
			'bit_score' => '83.6',
			'alignment_length' => '207',
			'identity_percentage' => '27.54',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_167G00010' => array(
			'gene_id' => 'CNC64A_167G00010',
			'e_value' => '2e-17',
			'bit_score' => '82.8',
			'alignment_length' => '234',
			'identity_percentage' => '29.06',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_13G02740' => array(
			'gene_id' => 'PTI_13G02740',
			'e_value' => '3e-17',
			'bit_score' => '82.8',
			'alignment_length' => '265',
			'identity_percentage' => '26.79',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_09G00960' => array(
			'gene_id' => 'PTI_09G00960',
			'e_value' => '6e-17',
			'bit_score' => '82.8',
			'alignment_length' => '169',
			'identity_percentage' => '30.77',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte33160' => array(
			'gene_id' => 'pte33160',
			'e_value' => '6e-17',
			'bit_score' => '81.6',
			'alignment_length' => '185',
			'identity_percentage' => '30.81',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP06G04610' => array(
			'gene_id' => 'TP06G04610',
			'e_value' => '1e-16',
			'bit_score' => '80.1',
			'alignment_length' => '204',
			'identity_percentage' => '25.98',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0180G00150' => array(
			'gene_id' => 'ES0180G00150',
			'e_value' => '4e-16',
			'bit_score' => '80.1',
			'alignment_length' => '208',
			'identity_percentage' => '32.21',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0005G03020' => array(
			'gene_id' => 'AA0005G03020',
			'e_value' => '2e-15',
			'bit_score' => '74.3',
			'alignment_length' => '113',
			'identity_percentage' => '38.05',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G41290' => array(
			'gene_id' => 'HE0000G41290',
			'e_value' => '2e-15',
			'bit_score' => '75.5',
			'alignment_length' => '139',
			'identity_percentage' => '32.37',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte656850' => array(
			'gene_id' => 'pte656850',
			'e_value' => '3e-15',
			'bit_score' => '76.6',
			'alignment_length' => '184',
			'identity_percentage' => '28.26',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G39310' => array(
			'gene_id' => 'AP00G39310',
			'e_value' => '1e-14',
			'bit_score' => '74.7',
			'alignment_length' => '160',
			'identity_percentage' => '33.12',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte422770' => array(
			'gene_id' => 'pte422770',
			'e_value' => '2e-14',
			'bit_score' => '73.9',
			'alignment_length' => '214',
			'identity_percentage' => '28.04',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP04G07930' => array(
			'gene_id' => 'TP04G07930',
			'e_value' => '3e-14',
			'bit_score' => '72.4',
			'alignment_length' => '152',
			'identity_percentage' => '30.92',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu96750' => array(
			'gene_id' => 'gsu96750',
			'e_value' => '4e-14',
			'bit_score' => '73.9',
			'alignment_length' => '227',
			'identity_percentage' => '32.16',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0011G01730' => array(
			'gene_id' => 'AA0011G01730',
			'e_value' => '3e-13',
			'bit_score' => '72.4',
			'alignment_length' => '195',
			'identity_percentage' => '28.72',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC012G02490' => array(
			'gene_id' => 'FC012G02490',
			'e_value' => '3e-13',
			'bit_score' => '71.2',
			'alignment_length' => '206',
			'identity_percentage' => '26.70',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G09060' => array(
			'gene_id' => 'FC001G09060',
			'e_value' => '6e-13',
			'bit_score' => '69.3',
			'alignment_length' => '155',
			'identity_percentage' => '29.03',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0149G00240' => array(
			'gene_id' => 'ES0149G00240',
			'e_value' => '9e-10',
			'bit_score' => '62.4',
			'alignment_length' => '229',
			'identity_percentage' => '25.76',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh724700' => array(
			'gene_id' => 'emh724700',
			'e_value' => '2e-09',
			'bit_score' => '61.6',
			'alignment_length' => '191',
			'identity_percentage' => '25.13',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC365.08c' => array(
			'gene_id' => 'SPBC365.08c',
			'e_value' => '3e-09',
			'bit_score' => '59.7',
			'alignment_length' => '159',
			'identity_percentage' => '30.19',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100052g22' => array(
			'gene_id' => 'Naga_100052g22',
			'e_value' => '7e-09',
			'bit_score' => '59.7',
			'alignment_length' => '195',
			'identity_percentage' => '23.59',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0048G00520' => array(
			'gene_id' => 'ES0048G00520',
			'e_value' => '2e-08',
			'bit_score' => '58.5',
			'alignment_length' => '132',
			'identity_percentage' => '33.33',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP13G01890' => array(
			'gene_id' => 'TP13G01890',
			'e_value' => '9e-08',
			'bit_score' => '55.1',
			'alignment_length' => '176',
			'identity_percentage' => '28.41',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP15G00800' => array(
			'gene_id' => 'TP15G00800',
			'e_value' => '1e-07',
			'bit_score' => '56.2',
			'alignment_length' => '211',
			'identity_percentage' => '27.96',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_01G03290' => array(
			'gene_id' => 'PTI_01G03290',
			'e_value' => '4e-07',
			'bit_score' => '54.3',
			'alignment_length' => '216',
			'identity_percentage' => '26.85',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0010G01610' => array(
			'gene_id' => 'AA0010G01610',
			'e_value' => '3e-06',
			'bit_score' => '51.2',
			'alignment_length' => '163',
			'identity_percentage' => '26.99',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'cre' => array(
			(int) 0 => 'CR15G00540',
			(int) 1 => 'CR12G08730'
		),
		'vca' => array(
			(int) 0 => 'VC00G105800',
			(int) 1 => 'VC00G131550'
		),
		'cvu' => array(
			(int) 0 => 'CV00G63120',
			(int) 1 => 'CV00G18750',
			(int) 2 => 'CV00G18770'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_002G04430'
		),
		'apr' => array(
			(int) 0 => 'AP00G18340',
			(int) 1 => 'AP00G39310'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G24210',
			(int) 1 => 'HE0000G41290'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_04G02020',
			(int) 1 => 'BPRRCC1105_07G00150'
		),
		'mpu' => array(
			(int) 0 => 'MP09G02920',
			(int) 1 => 'MP01G00760'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_13G00520',
			(int) 1 => 'ORCC809_06G06880'
		),
		'olu' => array(
			(int) 0 => 'OL21G00500',
			(int) 1 => 'OL13G02500',
			(int) 2 => 'OL03G05850'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_06G02830',
			(int) 1 => 'MRCC299_01G00860'
		),
		'ome' => array(
			(int) 0 => 'OM_08G01820',
			(int) 1 => 'OM_07G04780'
		),
		'acg' => array(
			(int) 0 => 'AC00G11450',
			(int) 1 => 'AC00G88370'
		),
		'ota' => array(
			(int) 0 => 'OT_13G02650',
			(int) 1 => 'OT_03G06050'
		),
		'ppa' => array(
			(int) 0 => 'PP00068G01090',
			(int) 1 => 'PP00226G00370',
			(int) 2 => 'PP00213G00320'
		),
		'atr' => array(
			(int) 0 => 'ATR_00062G00960',
			(int) 1 => 'ATR_00056G01300'
		),
		'pse3' => array(
			(int) 0 => 'PI00G03570',
			(int) 1 => 'PI00G24270'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.05g04730',
			(int) 1 => 'RCC4223.04g01340'
		),
		'osa' => array(
			(int) 0 => 'OS03G63520',
			(int) 1 => 'OS05G09550'
		),
		'ath' => array(
			(int) 0 => 'AT4G04860',
			(int) 1 => 'AT4G21810',
			(int) 2 => 'AT4G29330'
		),
		'phs' => array(
			(int) 0 => 'phs173810',
			(int) 1 => 'phs171120'
		),
		'nga' => array(
			(int) 0 => 'Naga_100004g172',
			(int) 1 => 'Naga_100030g4',
			(int) 2 => 'Naga_100786g2',
			(int) 3 => 'Naga_100052g22'
		),
		'emh' => array(
			(int) 0 => 'emh659390',
			(int) 1 => 'emh645640',
			(int) 2 => 'emh750850',
			(int) 3 => 'emh724700'
		),
		'tps' => array(
			(int) 0 => 'TP06G07000',
			(int) 1 => 'TP06G04610',
			(int) 2 => 'TP04G07930',
			(int) 3 => 'TP13G01890',
			(int) 4 => 'TP15G00800'
		),
		'aan' => array(
			(int) 0 => 'AA0023G00650',
			(int) 1 => 'AA0005G03020',
			(int) 2 => 'AA0011G01730',
			(int) 3 => 'AA0010G01610'
		),
		'ptri' => array(
			(int) 0 => 'PTI_12G00180',
			(int) 1 => 'PTI_13G02740',
			(int) 2 => 'PTI_09G00960',
			(int) 3 => 'PTI_01G03290'
		),
		'fcy' => array(
			(int) 0 => 'FC027G02270',
			(int) 1 => 'FC012G02490',
			(int) 2 => 'FC001G09060'
		),
		'drm' => array(
			(int) 0 => 'FBgn0038438',
			(int) 1 => 'FBgn0031376'
		),
		'gsu' => array(
			(int) 0 => 'gsu16030',
			(int) 1 => 'gsu96750'
		),
		'esi' => array(
			(int) 0 => 'ES0334G00070',
			(int) 1 => 'ES0180G00150',
			(int) 2 => 'ES0149G00240',
			(int) 3 => 'ES0048G00520'
		),
		'mus' => array(
			(int) 0 => 'ENSMUSG00000009092',
			(int) 1 => 'ENSMUSG00000022365'
		),
		'cme' => array(
			(int) 0 => 'CM11G01620',
			(int) 1 => 'CM09G01590'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000099958',
			(int) 1 => 'ENSG00000274437'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0285131',
			(int) 1 => 'DDB_G0288833'
		),
		'cel' => array(
			(int) 0 => 'WBGene00020109',
			(int) 1 => 'WBGene00000843'
		),
		'scp' => array(
			(int) 0 => 'SPAC1687.17c',
			(int) 1 => 'SPBC365.08c'
		),
		'pte' => array(
			(int) 0 => 'pte104470',
			(int) 1 => 'pte33160',
			(int) 2 => 'pte656850',
			(int) 3 => 'pte422770'
		)
	),
	'gene_id' => 'CR15G00540',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'CR15G00540',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'DDB_G0279925',
	'gf_placeholder' => 'HOM03P000627',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'CR15G00540' => array(
		'gene_id' => 'CR15G00540',
		'e_value' => '0.0',
		'bit_score' => '550',
		'alignment_length' => '273',
		'identity_percentage' => '100.00',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'VC00G105800' => array(
		'gene_id' => 'VC00G105800',
		'e_value' => '3e-113',
		'bit_score' => '334',
		'alignment_length' => '243',
		'identity_percentage' => '76.54',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'CV00G63120' => array(
		'gene_id' => 'CV00G63120',
		'e_value' => '9e-106',
		'bit_score' => '314',
		'alignment_length' => '209',
		'identity_percentage' => '72.73',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'CNC64A_002G04430' => array(
		'gene_id' => 'CNC64A_002G04430',
		'e_value' => '2e-104',
		'bit_score' => '311',
		'alignment_length' => '215',
		'identity_percentage' => '72.56',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AP00G18340' => array(
		'gene_id' => 'AP00G18340',
		'e_value' => '2e-99',
		'bit_score' => '297',
		'alignment_length' => '205',
		'identity_percentage' => '68.78',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'HE0000G24210' => array(
		'gene_id' => 'HE0000G24210',
		'e_value' => '6e-99',
		'bit_score' => '298',
		'alignment_length' => '257',
		'identity_percentage' => '62.26',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'BPRRCC1105_04G02020' => array(
		'gene_id' => 'BPRRCC1105_04G02020',
		'e_value' => '1e-93',
		'bit_score' => '286',
		'alignment_length' => '202',
		'identity_percentage' => '66.83',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'MP09G02920' => array(
		'gene_id' => 'MP09G02920',
		'e_value' => '2e-93',
		'bit_score' => '285',
		'alignment_length' => '206',
		'identity_percentage' => '67.96',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ORCC809_13G00520' => array(
		'gene_id' => 'ORCC809_13G00520',
		'e_value' => '2e-92',
		'bit_score' => '280',
		'alignment_length' => '227',
		'identity_percentage' => '61.23',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OL21G00500' => array(
		'gene_id' => 'OL21G00500',
		'e_value' => '3e-92',
		'bit_score' => '280',
		'alignment_length' => '202',
		'identity_percentage' => '64.85',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OL13G02500' => array(
		'gene_id' => 'OL13G02500',
		'e_value' => '3e-92',
		'bit_score' => '280',
		'alignment_length' => '202',
		'identity_percentage' => '64.85',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'MRCC299_06G02830' => array(
		'gene_id' => 'MRCC299_06G02830',
		'e_value' => '5e-92',
		'bit_score' => '280',
		'alignment_length' => '270',
		'identity_percentage' => '57.78',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OM_08G01820' => array(
		'gene_id' => 'OM_08G01820',
		'e_value' => '2e-90',
		'bit_score' => '275',
		'alignment_length' => '211',
		'identity_percentage' => '61.61',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AC00G11450' => array(
		'gene_id' => 'AC00G11450',
		'e_value' => '5e-90',
		'bit_score' => '275',
		'alignment_length' => '223',
		'identity_percentage' => '62.33',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OT_13G02650' => array(
		'gene_id' => 'OT_13G02650',
		'e_value' => '3e-88',
		'bit_score' => '269',
		'alignment_length' => '216',
		'identity_percentage' => '60.19',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'PP00068G01090' => array(
		'gene_id' => 'PP00068G01090',
		'e_value' => '3e-87',
		'bit_score' => '267',
		'alignment_length' => '224',
		'identity_percentage' => '59.82',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'PP00226G00370' => array(
		'gene_id' => 'PP00226G00370',
		'e_value' => '9e-83',
		'bit_score' => '255',
		'alignment_length' => '218',
		'identity_percentage' => '57.34',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ATR_00062G00960' => array(
		'gene_id' => 'ATR_00062G00960',
		'e_value' => '1e-81',
		'bit_score' => '253',
		'alignment_length' => '224',
		'identity_percentage' => '55.36',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'PI00G03570' => array(
		'gene_id' => 'PI00G03570',
		'e_value' => '1e-81',
		'bit_score' => '252',
		'alignment_length' => '207',
		'identity_percentage' => '57.97',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'RCC4223.05g04730' => array(
		'gene_id' => 'RCC4223.05g04730',
		'e_value' => '2e-81',
		'bit_score' => '251',
		'alignment_length' => '207',
		'identity_percentage' => '58.45',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OS03G63520' => array(
		'gene_id' => 'OS03G63520',
		'e_value' => '6e-78',
		'bit_score' => '243',
		'alignment_length' => '248',
		'identity_percentage' => '50.81',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AT4G04860' => array(
		'gene_id' => 'AT4G04860',
		'e_value' => '3e-76',
		'bit_score' => '239',
		'alignment_length' => '228',
		'identity_percentage' => '52.19',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AT4G21810' => array(
		'gene_id' => 'AT4G21810',
		'e_value' => '3e-73',
		'bit_score' => '231',
		'alignment_length' => '228',
		'identity_percentage' => '51.75',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'phs173810' => array(
		'gene_id' => 'phs173810',
		'e_value' => '6e-73',
		'bit_score' => '230',
		'alignment_length' => '248',
		'identity_percentage' => '49.19',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'Naga_100004g172' => array(
		'gene_id' => 'Naga_100004g172',
		'e_value' => '3e-71',
		'bit_score' => '229',
		'alignment_length' => '245',
		'identity_percentage' => '50.61',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'emh659390' => array(
		'gene_id' => 'emh659390',
		'e_value' => '8e-69',
		'bit_score' => '219',
		'alignment_length' => '213',
		'identity_percentage' => '55.40',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'TP06G07000' => array(
		'gene_id' => 'TP06G07000',
		'e_value' => '2e-68',
		'bit_score' => '218',
		'alignment_length' => '204',
		'identity_percentage' => '52.45',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AA0023G00650' => array(
		'gene_id' => 'AA0023G00650',
		'e_value' => '2e-68',
		'bit_score' => '216',
		'alignment_length' => '189',
		'identity_percentage' => '55.03',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'PTI_12G00180' => array(
		'gene_id' => 'PTI_12G00180',
		'e_value' => '1e-61',
		'bit_score' => '201',
		'alignment_length' => '206',
		'identity_percentage' => '47.09',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'FC027G02270' => array(
		'gene_id' => 'FC027G02270',
		'e_value' => '2e-61',
		'bit_score' => '200',
		'alignment_length' => '198',
		'identity_percentage' => '49.49',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'FBgn0038438' => array(
		'gene_id' => 'FBgn0038438',
		'e_value' => '4e-59',
		'bit_score' => '195',
		'alignment_length' => '200',
		'identity_percentage' => '47.00',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'gsu16030' => array(
		'gene_id' => 'gsu16030',
		'e_value' => '5e-59',
		'bit_score' => '193',
		'alignment_length' => '177',
		'identity_percentage' => '55.93',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ES0334G00070' => array(
		'gene_id' => 'ES0334G00070',
		'e_value' => '2e-56',
		'bit_score' => '188',
		'alignment_length' => '214',
		'identity_percentage' => '47.20',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ENSMUSG00000009092' => array(
		'gene_id' => 'ENSMUSG00000009092',
		'e_value' => '2e-55',
		'bit_score' => '184',
		'alignment_length' => '222',
		'identity_percentage' => '47.75',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'CM11G01620' => array(
		'gene_id' => 'CM11G01620',
		'e_value' => '3e-55',
		'bit_score' => '184',
		'alignment_length' => '218',
		'identity_percentage' => '48.62',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ENSG00000099958' => array(
		'gene_id' => 'ENSG00000099958',
		'e_value' => '8e-55',
		'bit_score' => '183',
		'alignment_length' => '196',
		'identity_percentage' => '51.02',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ENSG00000274437' => array(
		'gene_id' => 'ENSG00000274437',
		'e_value' => '8e-55',
		'bit_score' => '183',
		'alignment_length' => '196',
		'identity_percentage' => '51.02',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'emh645640' => array(
		'gene_id' => 'emh645640',
		'e_value' => '2e-54',
		'bit_score' => '181',
		'alignment_length' => '166',
		'identity_percentage' => '56.02',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'DDB_G0285131' => array(
		'gene_id' => 'DDB_G0285131',
		'e_value' => '2e-52',
		'bit_score' => '177',
		'alignment_length' => '210',
		'identity_percentage' => '43.81',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'WBGene00020109' => array(
		'gene_id' => 'WBGene00020109',
		'e_value' => '5e-48',
		'bit_score' => '166',
		'alignment_length' => '222',
		'identity_percentage' => '45.95',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AT4G29330' => array(
		'gene_id' => 'AT4G29330',
		'e_value' => '5e-38',
		'bit_score' => '140',
		'alignment_length' => '197',
		'identity_percentage' => '37.06',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'BPRRCC1105_07G00150' => array(
		'gene_id' => 'BPRRCC1105_07G00150',
		'e_value' => '1e-36',
		'bit_score' => '136',
		'alignment_length' => '241',
		'identity_percentage' => '34.85',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'OS05G09550' => array(
		'gene_id' => 'OS05G09550',
		'e_value' => '2e-36',
		'bit_score' => '135',
		'alignment_length' => '220',
		'identity_percentage' => '35.45',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'PP00213G00320' => array(
		'gene_id' => 'PP00213G00320',
		'e_value' => '4e-36',
		'bit_score' => '134',
		'alignment_length' => '215',
		'identity_percentage' => '35.35',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'phs171120' => array(
		'gene_id' => 'phs171120',
		'e_value' => '8e-36',
		'bit_score' => '134',
		'alignment_length' => '215',
		'identity_percentage' => '37.21',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'AC00G88370' => array(
		'gene_id' => 'AC00G88370',
		'e_value' => '2e-34',
		'bit_score' => '129',
		'alignment_length' => '196',
		'identity_percentage' => '37.24',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'emh750850' => array(
		'gene_id' => 'emh750850',
		'e_value' => '1e-33',
		'bit_score' => '128',
		'alignment_length' => '198',
		'identity_percentage' => '38.38',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'MRCC299_01G00860' => array(
		'gene_id' => 'MRCC299_01G00860',
		'e_value' => '1e-33',
		'bit_score' => '129',
		'alignment_length' => '185',
		'identity_percentage' => '37.30',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'CV00G18750' => array(
		'gene_id' => 'CV00G18750',
		'e_value' => '7e-33',
		'bit_score' => '126',
		'alignment_length' => '220',
		'identity_percentage' => '35.91',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'CV00G18770' => array(
		'gene_id' => 'CV00G18770',
		'e_value' => '8e-33',
		'bit_score' => '126',
		'alignment_length' => '220',
		'identity_percentage' => '35.91',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'ATR_00056G01300' => array(
		'gene_id' => 'ATR_00056G01300',
		'e_value' => '1e-32',
		'bit_score' => '125',
		'alignment_length' => '222',
		'identity_percentage' => '35.59',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'OT_03G06050' => array(
		'gene_id' => 'OT_03G06050',
		'e_value' => '2e-32',
		'bit_score' => '125',
		'alignment_length' => '227',
		'identity_percentage' => '34.80',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'OM_07G04780' => array(
		'gene_id' => 'OM_07G04780',
		'e_value' => '5e-32',
		'bit_score' => '124',
		'alignment_length' => '201',
		'identity_percentage' => '35.82',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'MP01G00760' => array(
		'gene_id' => 'MP01G00760',
		'e_value' => '8e-32',
		'bit_score' => '123',
		'alignment_length' => '189',
		'identity_percentage' => '37.04',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'ORCC809_06G06880' => array(
		'gene_id' => 'ORCC809_06G06880',
		'e_value' => '5e-28',
		'bit_score' => '113',
		'alignment_length' => '225',
		'identity_percentage' => '32.89',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'OL03G05850' => array(
		'gene_id' => 'OL03G05850',
		'e_value' => '3e-26',
		'bit_score' => '107',
		'alignment_length' => '202',
		'identity_percentage' => '33.66',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'PI00G24270' => array(
		'gene_id' => 'PI00G24270',
		'e_value' => '1e-25',
		'bit_score' => '106',
		'alignment_length' => '231',
		'identity_percentage' => '30.30',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'VC00G131550' => array(
		'gene_id' => 'VC00G131550',
		'e_value' => '2e-25',
		'bit_score' => '106',
		'alignment_length' => '248',
		'identity_percentage' => '32.26',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'Naga_100030g4' => array(
		'gene_id' => 'Naga_100030g4',
		'e_value' => '5e-25',
		'bit_score' => '105',
		'alignment_length' => '173',
		'identity_percentage' => '36.42',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'CR12G08730' => array(
		'gene_id' => 'CR12G08730',
		'e_value' => '3e-24',
		'bit_score' => '103',
		'alignment_length' => '190',
		'identity_percentage' => '33.68',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'RCC4223.04g01340' => array(
		'gene_id' => 'RCC4223.04g01340',
		'e_value' => '4e-24',
		'bit_score' => '102',
		'alignment_length' => '231',
		'identity_percentage' => '29.87',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'FBgn0031376' => array(
		'gene_id' => 'FBgn0031376',
		'e_value' => '5e-22',
		'bit_score' => '96.3',
		'alignment_length' => '243',
		'identity_percentage' => '28.40',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'CM09G01590' => array(
		'gene_id' => 'CM09G01590',
		'e_value' => '5e-21',
		'bit_score' => '94.0',
		'alignment_length' => '251',
		'identity_percentage' => '28.69',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'ENSMUSG00000022365' => array(
		'gene_id' => 'ENSMUSG00000022365',
		'e_value' => '1e-20',
		'bit_score' => '92.8',
		'alignment_length' => '231',
		'identity_percentage' => '30.30',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'DDB_G0288833' => array(
		'gene_id' => 'DDB_G0288833',
		'e_value' => '1e-20',
		'bit_score' => '92.4',
		'alignment_length' => '241',
		'identity_percentage' => '26.14',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'SPAC1687.17c' => array(
		'gene_id' => 'SPAC1687.17c',
		'e_value' => '5e-20',
		'bit_score' => '89.7',
		'alignment_length' => '180',
		'identity_percentage' => '29.44',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'WBGene00000843' => array(
		'gene_id' => 'WBGene00000843',
		'e_value' => '6e-20',
		'bit_score' => '90.5',
		'alignment_length' => '192',
		'identity_percentage' => '29.69',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'Naga_100786g2' => array(
		'gene_id' => 'Naga_100786g2',
		'e_value' => '1e-18',
		'bit_score' => '89.0',
		'alignment_length' => '179',
		'identity_percentage' => '31.28',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'pte104470' => array(
		'gene_id' => 'pte104470',
		'e_value' => '1e-17',
		'bit_score' => '83.6',
		'alignment_length' => '207',
		'identity_percentage' => '27.54',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'CNC64A_167G00010' => array(
		'gene_id' => 'CNC64A_167G00010',
		'e_value' => '2e-17',
		'bit_score' => '82.8',
		'alignment_length' => '234',
		'identity_percentage' => '29.06',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'PTI_13G02740' => array(
		'gene_id' => 'PTI_13G02740',
		'e_value' => '3e-17',
		'bit_score' => '82.8',
		'alignment_length' => '265',
		'identity_percentage' => '26.79',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'PTI_09G00960' => array(
		'gene_id' => 'PTI_09G00960',
		'e_value' => '6e-17',
		'bit_score' => '82.8',
		'alignment_length' => '169',
		'identity_percentage' => '30.77',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'pte33160' => array(
		'gene_id' => 'pte33160',
		'e_value' => '6e-17',
		'bit_score' => '81.6',
		'alignment_length' => '185',
		'identity_percentage' => '30.81',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P044322'
		)
	),
	'TP06G04610' => array(
		'gene_id' => 'TP06G04610',
		'e_value' => '1e-16',
		'bit_score' => '80.1',
		'alignment_length' => '204',
		'identity_percentage' => '25.98',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'ES0180G00150' => array(
		'gene_id' => 'ES0180G00150',
		'e_value' => '4e-16',
		'bit_score' => '80.1',
		'alignment_length' => '208',
		'identity_percentage' => '32.21',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'AA0005G03020' => array(
		'gene_id' => 'AA0005G03020',
		'e_value' => '2e-15',
		'bit_score' => '74.3',
		'alignment_length' => '113',
		'identity_percentage' => '38.05',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'HE0000G41290' => array(
		'gene_id' => 'HE0000G41290',
		'e_value' => '2e-15',
		'bit_score' => '75.5',
		'alignment_length' => '139',
		'identity_percentage' => '32.37',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'pte656850' => array(
		'gene_id' => 'pte656850',
		'e_value' => '3e-15',
		'bit_score' => '76.6',
		'alignment_length' => '184',
		'identity_percentage' => '28.26',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P044322'
		)
	),
	'AP00G39310' => array(
		'gene_id' => 'AP00G39310',
		'e_value' => '1e-14',
		'bit_score' => '74.7',
		'alignment_length' => '160',
		'identity_percentage' => '33.12',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'pte422770' => array(
		'gene_id' => 'pte422770',
		'e_value' => '2e-14',
		'bit_score' => '73.9',
		'alignment_length' => '214',
		'identity_percentage' => '28.04',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'TP04G07930' => array(
		'gene_id' => 'TP04G07930',
		'e_value' => '3e-14',
		'bit_score' => '72.4',
		'alignment_length' => '152',
		'identity_percentage' => '30.92',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'gsu96750' => array(
		'gene_id' => 'gsu96750',
		'e_value' => '4e-14',
		'bit_score' => '73.9',
		'alignment_length' => '227',
		'identity_percentage' => '32.16',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'AA0011G01730' => array(
		'gene_id' => 'AA0011G01730',
		'e_value' => '3e-13',
		'bit_score' => '72.4',
		'alignment_length' => '195',
		'identity_percentage' => '28.72',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'FC012G02490' => array(
		'gene_id' => 'FC012G02490',
		'e_value' => '3e-13',
		'bit_score' => '71.2',
		'alignment_length' => '206',
		'identity_percentage' => '26.70',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'FC001G09060' => array(
		'gene_id' => 'FC001G09060',
		'e_value' => '6e-13',
		'bit_score' => '69.3',
		'alignment_length' => '155',
		'identity_percentage' => '29.03',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'ES0149G00240' => array(
		'gene_id' => 'ES0149G00240',
		'e_value' => '9e-10',
		'bit_score' => '62.4',
		'alignment_length' => '229',
		'identity_percentage' => '25.76',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	),
	'emh724700' => array(
		'gene_id' => 'emh724700',
		'e_value' => '2e-09',
		'bit_score' => '61.6',
		'alignment_length' => '191',
		'identity_percentage' => '25.13',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P077563'
		)
	),
	'SPBC365.08c' => array(
		'gene_id' => 'SPBC365.08c',
		'e_value' => '3e-09',
		'bit_score' => '59.7',
		'alignment_length' => '159',
		'identity_percentage' => '30.19',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'Naga_100052g22' => array(
		'gene_id' => 'Naga_100052g22',
		'e_value' => '7e-09',
		'bit_score' => '59.7',
		'alignment_length' => '195',
		'identity_percentage' => '23.59',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	),
	'ES0048G00520' => array(
		'gene_id' => 'ES0048G00520',
		'e_value' => '2e-08',
		'bit_score' => '58.5',
		'alignment_length' => '132',
		'identity_percentage' => '33.33',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'TP13G01890' => array(
		'gene_id' => 'TP13G01890',
		'e_value' => '9e-08',
		'bit_score' => '55.1',
		'alignment_length' => '176',
		'identity_percentage' => '28.41',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	),
	'TP15G00800' => array(
		'gene_id' => 'TP15G00800',
		'e_value' => '1e-07',
		'bit_score' => '56.2',
		'alignment_length' => '211',
		'identity_percentage' => '27.96',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P140795'
		)
	),
	'PTI_01G03290' => array(
		'gene_id' => 'PTI_01G03290',
		'e_value' => '4e-07',
		'bit_score' => '54.3',
		'alignment_length' => '216',
		'identity_percentage' => '26.85',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	),
	'AA0010G01610' => array(
		'gene_id' => 'AA0010G01610',
		'e_value' => '3e-06',
		'bit_score' => '51.2',
		'alignment_length' => '163',
		'identity_percentage' => '26.99',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	)
)
$similarity_hits_species = array(
	'cre' => array(
		(int) 0 => 'CR15G00540',
		(int) 1 => 'CR12G08730'
	),
	'vca' => array(
		(int) 0 => 'VC00G105800',
		(int) 1 => 'VC00G131550'
	),
	'cvu' => array(
		(int) 0 => 'CV00G63120',
		(int) 1 => 'CV00G18750',
		(int) 2 => 'CV00G18770'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_002G04430'
	),
	'apr' => array(
		(int) 0 => 'AP00G18340',
		(int) 1 => 'AP00G39310'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G24210',
		(int) 1 => 'HE0000G41290'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_04G02020',
		(int) 1 => 'BPRRCC1105_07G00150'
	),
	'mpu' => array(
		(int) 0 => 'MP09G02920',
		(int) 1 => 'MP01G00760'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_13G00520',
		(int) 1 => 'ORCC809_06G06880'
	),
	'olu' => array(
		(int) 0 => 'OL21G00500',
		(int) 1 => 'OL13G02500',
		(int) 2 => 'OL03G05850'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_06G02830',
		(int) 1 => 'MRCC299_01G00860'
	),
	'ome' => array(
		(int) 0 => 'OM_08G01820',
		(int) 1 => 'OM_07G04780'
	),
	'acg' => array(
		(int) 0 => 'AC00G11450',
		(int) 1 => 'AC00G88370'
	),
	'ota' => array(
		(int) 0 => 'OT_13G02650',
		(int) 1 => 'OT_03G06050'
	),
	'ppa' => array(
		(int) 0 => 'PP00068G01090',
		(int) 1 => 'PP00226G00370',
		(int) 2 => 'PP00213G00320'
	),
	'atr' => array(
		(int) 0 => 'ATR_00062G00960',
		(int) 1 => 'ATR_00056G01300'
	),
	'pse3' => array(
		(int) 0 => 'PI00G03570',
		(int) 1 => 'PI00G24270'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.05g04730',
		(int) 1 => 'RCC4223.04g01340'
	),
	'osa' => array(
		(int) 0 => 'OS03G63520',
		(int) 1 => 'OS05G09550'
	),
	'ath' => array(
		(int) 0 => 'AT4G04860',
		(int) 1 => 'AT4G21810',
		(int) 2 => 'AT4G29330'
	),
	'phs' => array(
		(int) 0 => 'phs173810',
		(int) 1 => 'phs171120'
	),
	'nga' => array(
		(int) 0 => 'Naga_100004g172',
		(int) 1 => 'Naga_100030g4',
		(int) 2 => 'Naga_100786g2',
		(int) 3 => 'Naga_100052g22'
	),
	'emh' => array(
		(int) 0 => 'emh659390',
		(int) 1 => 'emh645640',
		(int) 2 => 'emh750850',
		(int) 3 => 'emh724700'
	),
	'tps' => array(
		(int) 0 => 'TP06G07000',
		(int) 1 => 'TP06G04610',
		(int) 2 => 'TP04G07930',
		(int) 3 => 'TP13G01890',
		(int) 4 => 'TP15G00800'
	),
	'aan' => array(
		(int) 0 => 'AA0023G00650',
		(int) 1 => 'AA0005G03020',
		(int) 2 => 'AA0011G01730',
		(int) 3 => 'AA0010G01610'
	),
	'ptri' => array(
		(int) 0 => 'PTI_12G00180',
		(int) 1 => 'PTI_13G02740',
		(int) 2 => 'PTI_09G00960',
		(int) 3 => 'PTI_01G03290'
	),
	'fcy' => array(
		(int) 0 => 'FC027G02270',
		(int) 1 => 'FC012G02490',
		(int) 2 => 'FC001G09060'
	),
	'drm' => array(
		(int) 0 => 'FBgn0038438',
		(int) 1 => 'FBgn0031376'
	),
	'gsu' => array(
		(int) 0 => 'gsu16030',
		(int) 1 => 'gsu96750'
	),
	'esi' => array(
		(int) 0 => 'ES0334G00070',
		(int) 1 => 'ES0180G00150',
		(int) 2 => 'ES0149G00240',
		(int) 3 => 'ES0048G00520'
	),
	'mus' => array(
		(int) 0 => 'ENSMUSG00000009092',
		(int) 1 => 'ENSMUSG00000022365'
	),
	'cme' => array(
		(int) 0 => 'CM11G01620',
		(int) 1 => 'CM09G01590'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000099958',
		(int) 1 => 'ENSG00000274437'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0285131',
		(int) 1 => 'DDB_G0288833'
	),
	'cel' => array(
		(int) 0 => 'WBGene00020109',
		(int) 1 => 'WBGene00000843'
	),
	'scp' => array(
		(int) 0 => 'SPAC1687.17c',
		(int) 1 => 'SPBC365.08c'
	),
	'pte' => array(
		(int) 0 => 'pte104470',
		(int) 1 => 'pte33160',
		(int) 2 => 'pte656850',
		(int) 3 => 'pte422770'
	)
)
$gene_id = 'CR15G00540'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'CR15G00540'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'DDB_G0279925'
$gf_placeholder = 'HOM03P000627'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_167G00010',
	'e_value' => '2e-17',
	'bit_score' => '82.8',
	'alignment_length' => '234',
	'identity_percentage' => '29.06',
	'gf' => array(
		'HOMFAM' => 'HOM03P000487',
		'ORTHOFAM' => 'ORTHO03P020594'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_167G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146

Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]
Code Context
                                                    echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
                                                    echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'similarity_hits_genes' => array(
		'CR15G00540' => array(
			'gene_id' => 'CR15G00540',
			'e_value' => '0.0',
			'bit_score' => '550',
			'alignment_length' => '273',
			'identity_percentage' => '100.00',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G105800' => array(
			'gene_id' => 'VC00G105800',
			'e_value' => '3e-113',
			'bit_score' => '334',
			'alignment_length' => '243',
			'identity_percentage' => '76.54',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G63120' => array(
			'gene_id' => 'CV00G63120',
			'e_value' => '9e-106',
			'bit_score' => '314',
			'alignment_length' => '209',
			'identity_percentage' => '72.73',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_002G04430' => array(
			'gene_id' => 'CNC64A_002G04430',
			'e_value' => '2e-104',
			'bit_score' => '311',
			'alignment_length' => '215',
			'identity_percentage' => '72.56',
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G18340' => array(
			'gene_id' => 'AP00G18340',
			'e_value' => '2e-99',
			'bit_score' => '297',
			'alignment_length' => '205',
			'identity_percentage' => '68.78',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G24210' => array(
			'gene_id' => 'HE0000G24210',
			'e_value' => '6e-99',
			'bit_score' => '298',
			'alignment_length' => '257',
			'identity_percentage' => '62.26',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_04G02020' => array(
			'gene_id' => 'BPRRCC1105_04G02020',
			'e_value' => '1e-93',
			'bit_score' => '286',
			'alignment_length' => '202',
			'identity_percentage' => '66.83',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP09G02920' => array(
			'gene_id' => 'MP09G02920',
			'e_value' => '2e-93',
			'bit_score' => '285',
			'alignment_length' => '206',
			'identity_percentage' => '67.96',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_13G00520' => array(
			'gene_id' => 'ORCC809_13G00520',
			'e_value' => '2e-92',
			'bit_score' => '280',
			'alignment_length' => '227',
			'identity_percentage' => '61.23',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL21G00500' => array(
			'gene_id' => 'OL21G00500',
			'e_value' => '3e-92',
			'bit_score' => '280',
			'alignment_length' => '202',
			'identity_percentage' => '64.85',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL13G02500' => array(
			'gene_id' => 'OL13G02500',
			'e_value' => '3e-92',
			'bit_score' => '280',
			'alignment_length' => '202',
			'identity_percentage' => '64.85',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_06G02830' => array(
			'gene_id' => 'MRCC299_06G02830',
			'e_value' => '5e-92',
			'bit_score' => '280',
			'alignment_length' => '270',
			'identity_percentage' => '57.78',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_08G01820' => array(
			'gene_id' => 'OM_08G01820',
			'e_value' => '2e-90',
			'bit_score' => '275',
			'alignment_length' => '211',
			'identity_percentage' => '61.61',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G11450' => array(
			'gene_id' => 'AC00G11450',
			'e_value' => '5e-90',
			'bit_score' => '275',
			'alignment_length' => '223',
			'identity_percentage' => '62.33',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_13G02650' => array(
			'gene_id' => 'OT_13G02650',
			'e_value' => '3e-88',
			'bit_score' => '269',
			'alignment_length' => '216',
			'identity_percentage' => '60.19',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00068G01090' => array(
			'gene_id' => 'PP00068G01090',
			'e_value' => '3e-87',
			'bit_score' => '267',
			'alignment_length' => '224',
			'identity_percentage' => '59.82',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00226G00370' => array(
			'gene_id' => 'PP00226G00370',
			'e_value' => '9e-83',
			'bit_score' => '255',
			'alignment_length' => '218',
			'identity_percentage' => '57.34',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00062G00960' => array(
			'gene_id' => 'ATR_00062G00960',
			'e_value' => '1e-81',
			'bit_score' => '253',
			'alignment_length' => '224',
			'identity_percentage' => '55.36',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G03570' => array(
			'gene_id' => 'PI00G03570',
			'e_value' => '1e-81',
			'bit_score' => '252',
			'alignment_length' => '207',
			'identity_percentage' => '57.97',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.05g04730' => array(
			'gene_id' => 'RCC4223.05g04730',
			'e_value' => '2e-81',
			'bit_score' => '251',
			'alignment_length' => '207',
			'identity_percentage' => '58.45',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS03G63520' => array(
			'gene_id' => 'OS03G63520',
			'e_value' => '6e-78',
			'bit_score' => '243',
			'alignment_length' => '248',
			'identity_percentage' => '50.81',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G04860' => array(
			'gene_id' => 'AT4G04860',
			'e_value' => '3e-76',
			'bit_score' => '239',
			'alignment_length' => '228',
			'identity_percentage' => '52.19',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G21810' => array(
			'gene_id' => 'AT4G21810',
			'e_value' => '3e-73',
			'bit_score' => '231',
			'alignment_length' => '228',
			'identity_percentage' => '51.75',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs173810' => array(
			'gene_id' => 'phs173810',
			'e_value' => '6e-73',
			'bit_score' => '230',
			'alignment_length' => '248',
			'identity_percentage' => '49.19',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100004g172' => array(
			'gene_id' => 'Naga_100004g172',
			'e_value' => '3e-71',
			'bit_score' => '229',
			'alignment_length' => '245',
			'identity_percentage' => '50.61',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh659390' => array(
			'gene_id' => 'emh659390',
			'e_value' => '8e-69',
			'bit_score' => '219',
			'alignment_length' => '213',
			'identity_percentage' => '55.40',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP06G07000' => array(
			'gene_id' => 'TP06G07000',
			'e_value' => '2e-68',
			'bit_score' => '218',
			'alignment_length' => '204',
			'identity_percentage' => '52.45',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0023G00650' => array(
			'gene_id' => 'AA0023G00650',
			'e_value' => '2e-68',
			'bit_score' => '216',
			'alignment_length' => '189',
			'identity_percentage' => '55.03',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_12G00180' => array(
			'gene_id' => 'PTI_12G00180',
			'e_value' => '1e-61',
			'bit_score' => '201',
			'alignment_length' => '206',
			'identity_percentage' => '47.09',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC027G02270' => array(
			'gene_id' => 'FC027G02270',
			'e_value' => '2e-61',
			'bit_score' => '200',
			'alignment_length' => '198',
			'identity_percentage' => '49.49',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0038438' => array(
			'gene_id' => 'FBgn0038438',
			'e_value' => '4e-59',
			'bit_score' => '195',
			'alignment_length' => '200',
			'identity_percentage' => '47.00',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu16030' => array(
			'gene_id' => 'gsu16030',
			'e_value' => '5e-59',
			'bit_score' => '193',
			'alignment_length' => '177',
			'identity_percentage' => '55.93',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0334G00070' => array(
			'gene_id' => 'ES0334G00070',
			'e_value' => '2e-56',
			'bit_score' => '188',
			'alignment_length' => '214',
			'identity_percentage' => '47.20',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000009092' => array(
			'gene_id' => 'ENSMUSG00000009092',
			'e_value' => '2e-55',
			'bit_score' => '184',
			'alignment_length' => '222',
			'identity_percentage' => '47.75',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM11G01620' => array(
			'gene_id' => 'CM11G01620',
			'e_value' => '3e-55',
			'bit_score' => '184',
			'alignment_length' => '218',
			'identity_percentage' => '48.62',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000099958' => array(
			'gene_id' => 'ENSG00000099958',
			'e_value' => '8e-55',
			'bit_score' => '183',
			'alignment_length' => '196',
			'identity_percentage' => '51.02',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSG00000274437' => array(
			'gene_id' => 'ENSG00000274437',
			'e_value' => '8e-55',
			'bit_score' => '183',
			'alignment_length' => '196',
			'identity_percentage' => '51.02',
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh645640' => array(
			'gene_id' => 'emh645640',
			'e_value' => '2e-54',
			'bit_score' => '181',
			'alignment_length' => '166',
			'identity_percentage' => '56.02',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0285131' => array(
			'gene_id' => 'DDB_G0285131',
			'e_value' => '2e-52',
			'bit_score' => '177',
			'alignment_length' => '210',
			'identity_percentage' => '43.81',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00020109' => array(
			'gene_id' => 'WBGene00020109',
			'e_value' => '5e-48',
			'bit_score' => '166',
			'alignment_length' => '222',
			'identity_percentage' => '45.95',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AT4G29330' => array(
			'gene_id' => 'AT4G29330',
			'e_value' => '5e-38',
			'bit_score' => '140',
			'alignment_length' => '197',
			'identity_percentage' => '37.06',
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'BPRRCC1105_07G00150' => array(
			'gene_id' => 'BPRRCC1105_07G00150',
			'e_value' => '1e-36',
			'bit_score' => '136',
			'alignment_length' => '241',
			'identity_percentage' => '34.85',
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OS05G09550' => array(
			'gene_id' => 'OS05G09550',
			'e_value' => '2e-36',
			'bit_score' => '135',
			'alignment_length' => '220',
			'identity_percentage' => '35.45',
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PP00213G00320' => array(
			'gene_id' => 'PP00213G00320',
			'e_value' => '4e-36',
			'bit_score' => '134',
			'alignment_length' => '215',
			'identity_percentage' => '35.35',
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'phs171120' => array(
			'gene_id' => 'phs171120',
			'e_value' => '8e-36',
			'bit_score' => '134',
			'alignment_length' => '215',
			'identity_percentage' => '37.21',
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AC00G88370' => array(
			'gene_id' => 'AC00G88370',
			'e_value' => '2e-34',
			'bit_score' => '129',
			'alignment_length' => '196',
			'identity_percentage' => '37.24',
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh750850' => array(
			'gene_id' => 'emh750850',
			'e_value' => '1e-33',
			'bit_score' => '128',
			'alignment_length' => '198',
			'identity_percentage' => '38.38',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MRCC299_01G00860' => array(
			'gene_id' => 'MRCC299_01G00860',
			'e_value' => '1e-33',
			'bit_score' => '129',
			'alignment_length' => '185',
			'identity_percentage' => '37.30',
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G18750' => array(
			'gene_id' => 'CV00G18750',
			'e_value' => '7e-33',
			'bit_score' => '126',
			'alignment_length' => '220',
			'identity_percentage' => '35.91',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CV00G18770' => array(
			'gene_id' => 'CV00G18770',
			'e_value' => '8e-33',
			'bit_score' => '126',
			'alignment_length' => '220',
			'identity_percentage' => '35.91',
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ATR_00056G01300' => array(
			'gene_id' => 'ATR_00056G01300',
			'e_value' => '1e-32',
			'bit_score' => '125',
			'alignment_length' => '222',
			'identity_percentage' => '35.59',
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OT_03G06050' => array(
			'gene_id' => 'OT_03G06050',
			'e_value' => '2e-32',
			'bit_score' => '125',
			'alignment_length' => '227',
			'identity_percentage' => '34.80',
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OM_07G04780' => array(
			'gene_id' => 'OM_07G04780',
			'e_value' => '5e-32',
			'bit_score' => '124',
			'alignment_length' => '201',
			'identity_percentage' => '35.82',
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'MP01G00760' => array(
			'gene_id' => 'MP01G00760',
			'e_value' => '8e-32',
			'bit_score' => '123',
			'alignment_length' => '189',
			'identity_percentage' => '37.04',
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ORCC809_06G06880' => array(
			'gene_id' => 'ORCC809_06G06880',
			'e_value' => '5e-28',
			'bit_score' => '113',
			'alignment_length' => '225',
			'identity_percentage' => '32.89',
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'OL03G05850' => array(
			'gene_id' => 'OL03G05850',
			'e_value' => '3e-26',
			'bit_score' => '107',
			'alignment_length' => '202',
			'identity_percentage' => '33.66',
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PI00G24270' => array(
			'gene_id' => 'PI00G24270',
			'e_value' => '1e-25',
			'bit_score' => '106',
			'alignment_length' => '231',
			'identity_percentage' => '30.30',
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'VC00G131550' => array(
			'gene_id' => 'VC00G131550',
			'e_value' => '2e-25',
			'bit_score' => '106',
			'alignment_length' => '248',
			'identity_percentage' => '32.26',
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100030g4' => array(
			'gene_id' => 'Naga_100030g4',
			'e_value' => '5e-25',
			'bit_score' => '105',
			'alignment_length' => '173',
			'identity_percentage' => '36.42',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CR12G08730' => array(
			'gene_id' => 'CR12G08730',
			'e_value' => '3e-24',
			'bit_score' => '103',
			'alignment_length' => '190',
			'identity_percentage' => '33.68',
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'RCC4223.04g01340' => array(
			'gene_id' => 'RCC4223.04g01340',
			'e_value' => '4e-24',
			'bit_score' => '102',
			'alignment_length' => '231',
			'identity_percentage' => '29.87',
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FBgn0031376' => array(
			'gene_id' => 'FBgn0031376',
			'e_value' => '5e-22',
			'bit_score' => '96.3',
			'alignment_length' => '243',
			'identity_percentage' => '28.40',
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CM09G01590' => array(
			'gene_id' => 'CM09G01590',
			'e_value' => '5e-21',
			'bit_score' => '94.0',
			'alignment_length' => '251',
			'identity_percentage' => '28.69',
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ENSMUSG00000022365' => array(
			'gene_id' => 'ENSMUSG00000022365',
			'e_value' => '1e-20',
			'bit_score' => '92.8',
			'alignment_length' => '231',
			'identity_percentage' => '30.30',
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'DDB_G0288833' => array(
			'gene_id' => 'DDB_G0288833',
			'e_value' => '1e-20',
			'bit_score' => '92.4',
			'alignment_length' => '241',
			'identity_percentage' => '26.14',
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPAC1687.17c' => array(
			'gene_id' => 'SPAC1687.17c',
			'e_value' => '5e-20',
			'bit_score' => '89.7',
			'alignment_length' => '180',
			'identity_percentage' => '29.44',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'WBGene00000843' => array(
			'gene_id' => 'WBGene00000843',
			'e_value' => '6e-20',
			'bit_score' => '90.5',
			'alignment_length' => '192',
			'identity_percentage' => '29.69',
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100786g2' => array(
			'gene_id' => 'Naga_100786g2',
			'e_value' => '1e-18',
			'bit_score' => '89.0',
			'alignment_length' => '179',
			'identity_percentage' => '31.28',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte104470' => array(
			'gene_id' => 'pte104470',
			'e_value' => '1e-17',
			'bit_score' => '83.6',
			'alignment_length' => '207',
			'identity_percentage' => '27.54',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'CNC64A_167G00010' => array(
			'gene_id' => 'CNC64A_167G00010',
			'e_value' => '2e-17',
			'bit_score' => '82.8',
			'alignment_length' => '234',
			'identity_percentage' => '29.06',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_13G02740' => array(
			'gene_id' => 'PTI_13G02740',
			'e_value' => '3e-17',
			'bit_score' => '82.8',
			'alignment_length' => '265',
			'identity_percentage' => '26.79',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_09G00960' => array(
			'gene_id' => 'PTI_09G00960',
			'e_value' => '6e-17',
			'bit_score' => '82.8',
			'alignment_length' => '169',
			'identity_percentage' => '30.77',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte33160' => array(
			'gene_id' => 'pte33160',
			'e_value' => '6e-17',
			'bit_score' => '81.6',
			'alignment_length' => '185',
			'identity_percentage' => '30.81',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP06G04610' => array(
			'gene_id' => 'TP06G04610',
			'e_value' => '1e-16',
			'bit_score' => '80.1',
			'alignment_length' => '204',
			'identity_percentage' => '25.98',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0180G00150' => array(
			'gene_id' => 'ES0180G00150',
			'e_value' => '4e-16',
			'bit_score' => '80.1',
			'alignment_length' => '208',
			'identity_percentage' => '32.21',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0005G03020' => array(
			'gene_id' => 'AA0005G03020',
			'e_value' => '2e-15',
			'bit_score' => '74.3',
			'alignment_length' => '113',
			'identity_percentage' => '38.05',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'HE0000G41290' => array(
			'gene_id' => 'HE0000G41290',
			'e_value' => '2e-15',
			'bit_score' => '75.5',
			'alignment_length' => '139',
			'identity_percentage' => '32.37',
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte656850' => array(
			'gene_id' => 'pte656850',
			'e_value' => '3e-15',
			'bit_score' => '76.6',
			'alignment_length' => '184',
			'identity_percentage' => '28.26',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AP00G39310' => array(
			'gene_id' => 'AP00G39310',
			'e_value' => '1e-14',
			'bit_score' => '74.7',
			'alignment_length' => '160',
			'identity_percentage' => '33.12',
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'pte422770' => array(
			'gene_id' => 'pte422770',
			'e_value' => '2e-14',
			'bit_score' => '73.9',
			'alignment_length' => '214',
			'identity_percentage' => '28.04',
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP04G07930' => array(
			'gene_id' => 'TP04G07930',
			'e_value' => '3e-14',
			'bit_score' => '72.4',
			'alignment_length' => '152',
			'identity_percentage' => '30.92',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'gsu96750' => array(
			'gene_id' => 'gsu96750',
			'e_value' => '4e-14',
			'bit_score' => '73.9',
			'alignment_length' => '227',
			'identity_percentage' => '32.16',
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0011G01730' => array(
			'gene_id' => 'AA0011G01730',
			'e_value' => '3e-13',
			'bit_score' => '72.4',
			'alignment_length' => '195',
			'identity_percentage' => '28.72',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC012G02490' => array(
			'gene_id' => 'FC012G02490',
			'e_value' => '3e-13',
			'bit_score' => '71.2',
			'alignment_length' => '206',
			'identity_percentage' => '26.70',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'FC001G09060' => array(
			'gene_id' => 'FC001G09060',
			'e_value' => '6e-13',
			'bit_score' => '69.3',
			'alignment_length' => '155',
			'identity_percentage' => '29.03',
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0149G00240' => array(
			'gene_id' => 'ES0149G00240',
			'e_value' => '9e-10',
			'bit_score' => '62.4',
			'alignment_length' => '229',
			'identity_percentage' => '25.76',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'emh724700' => array(
			'gene_id' => 'emh724700',
			'e_value' => '2e-09',
			'bit_score' => '61.6',
			'alignment_length' => '191',
			'identity_percentage' => '25.13',
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'SPBC365.08c' => array(
			'gene_id' => 'SPBC365.08c',
			'e_value' => '3e-09',
			'bit_score' => '59.7',
			'alignment_length' => '159',
			'identity_percentage' => '30.19',
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'Naga_100052g22' => array(
			'gene_id' => 'Naga_100052g22',
			'e_value' => '7e-09',
			'bit_score' => '59.7',
			'alignment_length' => '195',
			'identity_percentage' => '23.59',
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'ES0048G00520' => array(
			'gene_id' => 'ES0048G00520',
			'e_value' => '2e-08',
			'bit_score' => '58.5',
			'alignment_length' => '132',
			'identity_percentage' => '33.33',
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP13G01890' => array(
			'gene_id' => 'TP13G01890',
			'e_value' => '9e-08',
			'bit_score' => '55.1',
			'alignment_length' => '176',
			'identity_percentage' => '28.41',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'TP15G00800' => array(
			'gene_id' => 'TP15G00800',
			'e_value' => '1e-07',
			'bit_score' => '56.2',
			'alignment_length' => '211',
			'identity_percentage' => '27.96',
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'PTI_01G03290' => array(
			'gene_id' => 'PTI_01G03290',
			'e_value' => '4e-07',
			'bit_score' => '54.3',
			'alignment_length' => '216',
			'identity_percentage' => '26.85',
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'gf' => array(
				[maximum depth reached]
			)
		),
		'AA0010G01610' => array(
			'gene_id' => 'AA0010G01610',
			'e_value' => '3e-06',
			'bit_score' => '51.2',
			'alignment_length' => '163',
			'identity_percentage' => '26.99',
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'gf' => array(
				[maximum depth reached]
			)
		)
	),
	'similarity_hits_species' => array(
		'cre' => array(
			(int) 0 => 'CR15G00540',
			(int) 1 => 'CR12G08730'
		),
		'vca' => array(
			(int) 0 => 'VC00G105800',
			(int) 1 => 'VC00G131550'
		),
		'cvu' => array(
			(int) 0 => 'CV00G63120',
			(int) 1 => 'CV00G18750',
			(int) 2 => 'CV00G18770'
		),
		'cnc64a' => array(
			(int) 0 => 'CNC64A_002G04430'
		),
		'apr' => array(
			(int) 0 => 'AP00G18340',
			(int) 1 => 'AP00G39310'
		),
		'hsp' => array(
			(int) 0 => 'HE0000G24210',
			(int) 1 => 'HE0000G41290'
		),
		'bprrcc1105' => array(
			(int) 0 => 'BPRRCC1105_04G02020',
			(int) 1 => 'BPRRCC1105_07G00150'
		),
		'mpu' => array(
			(int) 0 => 'MP09G02920',
			(int) 1 => 'MP01G00760'
		),
		'orcc809' => array(
			(int) 0 => 'ORCC809_13G00520',
			(int) 1 => 'ORCC809_06G06880'
		),
		'olu' => array(
			(int) 0 => 'OL21G00500',
			(int) 1 => 'OL13G02500',
			(int) 2 => 'OL03G05850'
		),
		'mrcc299' => array(
			(int) 0 => 'MRCC299_06G02830',
			(int) 1 => 'MRCC299_01G00860'
		),
		'ome' => array(
			(int) 0 => 'OM_08G01820',
			(int) 1 => 'OM_07G04780'
		),
		'acg' => array(
			(int) 0 => 'AC00G11450',
			(int) 1 => 'AC00G88370'
		),
		'ota' => array(
			(int) 0 => 'OT_13G02650',
			(int) 1 => 'OT_03G06050'
		),
		'ppa' => array(
			(int) 0 => 'PP00068G01090',
			(int) 1 => 'PP00226G00370',
			(int) 2 => 'PP00213G00320'
		),
		'atr' => array(
			(int) 0 => 'ATR_00062G00960',
			(int) 1 => 'ATR_00056G01300'
		),
		'pse3' => array(
			(int) 0 => 'PI00G03570',
			(int) 1 => 'PI00G24270'
		),
		'prcc4223' => array(
			(int) 0 => 'RCC4223.05g04730',
			(int) 1 => 'RCC4223.04g01340'
		),
		'osa' => array(
			(int) 0 => 'OS03G63520',
			(int) 1 => 'OS05G09550'
		),
		'ath' => array(
			(int) 0 => 'AT4G04860',
			(int) 1 => 'AT4G21810',
			(int) 2 => 'AT4G29330'
		),
		'phs' => array(
			(int) 0 => 'phs173810',
			(int) 1 => 'phs171120'
		),
		'nga' => array(
			(int) 0 => 'Naga_100004g172',
			(int) 1 => 'Naga_100030g4',
			(int) 2 => 'Naga_100786g2',
			(int) 3 => 'Naga_100052g22'
		),
		'emh' => array(
			(int) 0 => 'emh659390',
			(int) 1 => 'emh645640',
			(int) 2 => 'emh750850',
			(int) 3 => 'emh724700'
		),
		'tps' => array(
			(int) 0 => 'TP06G07000',
			(int) 1 => 'TP06G04610',
			(int) 2 => 'TP04G07930',
			(int) 3 => 'TP13G01890',
			(int) 4 => 'TP15G00800'
		),
		'aan' => array(
			(int) 0 => 'AA0023G00650',
			(int) 1 => 'AA0005G03020',
			(int) 2 => 'AA0011G01730',
			(int) 3 => 'AA0010G01610'
		),
		'ptri' => array(
			(int) 0 => 'PTI_12G00180',
			(int) 1 => 'PTI_13G02740',
			(int) 2 => 'PTI_09G00960',
			(int) 3 => 'PTI_01G03290'
		),
		'fcy' => array(
			(int) 0 => 'FC027G02270',
			(int) 1 => 'FC012G02490',
			(int) 2 => 'FC001G09060'
		),
		'drm' => array(
			(int) 0 => 'FBgn0038438',
			(int) 1 => 'FBgn0031376'
		),
		'gsu' => array(
			(int) 0 => 'gsu16030',
			(int) 1 => 'gsu96750'
		),
		'esi' => array(
			(int) 0 => 'ES0334G00070',
			(int) 1 => 'ES0180G00150',
			(int) 2 => 'ES0149G00240',
			(int) 3 => 'ES0048G00520'
		),
		'mus' => array(
			(int) 0 => 'ENSMUSG00000009092',
			(int) 1 => 'ENSMUSG00000022365'
		),
		'cme' => array(
			(int) 0 => 'CM11G01620',
			(int) 1 => 'CM09G01590'
		),
		'hom' => array(
			(int) 0 => 'ENSG00000099958',
			(int) 1 => 'ENSG00000274437'
		),
		'ddi' => array(
			(int) 0 => 'DDB_G0285131',
			(int) 1 => 'DDB_G0288833'
		),
		'cel' => array(
			(int) 0 => 'WBGene00020109',
			(int) 1 => 'WBGene00000843'
		),
		'scp' => array(
			(int) 0 => 'SPAC1687.17c',
			(int) 1 => 'SPBC365.08c'
		),
		'pte' => array(
			(int) 0 => 'pte104470',
			(int) 1 => 'pte33160',
			(int) 2 => 'pte656850',
			(int) 3 => 'pte422770'
		)
	),
	'gene_id' => 'CR15G00540',
	'all_species_index' => array(
		(int) 0 => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		(int) 1 => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		(int) 2 => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		(int) 3 => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		(int) 4 => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		(int) 5 => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		(int) 6 => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		(int) 7 => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		(int) 8 => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		(int) 9 => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		(int) 10 => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		(int) 11 => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		(int) 12 => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		(int) 13 => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		(int) 14 => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		(int) 15 => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		(int) 16 => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		(int) 17 => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		(int) 18 => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		(int) 19 => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		(int) 20 => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		(int) 21 => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		(int) 22 => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		(int) 23 => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		(int) 24 => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		(int) 25 => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		(int) 26 => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		(int) 27 => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		(int) 28 => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		(int) 29 => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		(int) 30 => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		(int) 31 => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		(int) 32 => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		(int) 33 => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		(int) 34 => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		(int) 35 => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		(int) 36 => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		(int) 37 => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		(int) 38 => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'all_species' => array(
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702'
		),
		'acg' => array(
			'species' => 'acg',
			'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
			'tax_id' => '763042'
		),
		'aan' => array(
			'species' => 'aan',
			'common_name' => 'Aureococcus anophagefferens',
			'tax_id' => '44056'
		),
		'apr' => array(
			'species' => 'apr',
			'common_name' => 'Auxenochlorella protothecoides',
			'tax_id' => '3075'
		),
		'bprrcc1105' => array(
			'species' => 'bprrcc1105',
			'common_name' => 'Bathycoccus prasinos',
			'tax_id' => '41875'
		),
		'cel' => array(
			'species' => 'cel',
			'common_name' => 'Caenorhabditis elegans',
			'tax_id' => '6239'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055'
		),
		'cnc64a' => array(
			'species' => 'cnc64a',
			'common_name' => 'Chlorella sp NC64A',
			'tax_id' => '310507'
		),
		'ccr' => array(
			'species' => 'ccr',
			'common_name' => 'Chondrus crispus',
			'tax_id' => '2769'
		),
		'cvu' => array(
			'species' => 'cvu',
			'common_name' => 'Coccomyxa subellipsoidea C-169',
			'tax_id' => '574566'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cyanidioschyzon merolae',
			'tax_id' => '45157'
		),
		'ddi' => array(
			'species' => 'ddi',
			'common_name' => 'Dictyostelium discoideum',
			'tax_id' => '44689'
		),
		'drm' => array(
			'species' => 'drm',
			'common_name' => 'Drosophila melanogaster',
			'tax_id' => '7227'
		),
		'esi' => array(
			'species' => 'esi',
			'common_name' => 'Ectocarpus siliculosus',
			'tax_id' => '2880'
		),
		'emh' => array(
			'species' => 'emh',
			'common_name' => 'Emiliania huxleyi',
			'tax_id' => '280463'
		),
		'fcy' => array(
			'species' => 'fcy',
			'common_name' => 'Fragilariopsis cylindrus',
			'tax_id' => '186039'
		),
		'gsu' => array(
			'species' => 'gsu',
			'common_name' => 'Galdieria sulphuraria',
			'tax_id' => '130081'
		),
		'hsp' => array(
			'species' => 'hsp',
			'common_name' => 'Helicosporidium sp. ',
			'tax_id' => '145475'
		),
		'hom' => array(
			'species' => 'hom',
			'common_name' => 'Homo sapiens',
			'tax_id' => '9606'
		),
		'mpu' => array(
			'species' => 'mpu',
			'common_name' => 'Micromonas pusilla strain CCMP1545',
			'tax_id' => '564608'
		),
		'mrcc299' => array(
			'species' => 'mrcc299',
			'common_name' => 'Micromonas sp RCC299',
			'tax_id' => '296587'
		),
		'mus' => array(
			'species' => 'mus',
			'common_name' => 'Mus musculus',
			'tax_id' => '10090'
		),
		'nga' => array(
			'species' => 'nga',
			'common_name' => 'Nannochloropsis gaditana',
			'tax_id' => '72520'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa',
			'tax_id' => '4530'
		),
		'olu' => array(
			'species' => 'olu',
			'common_name' => 'Ostreococcus lucimarinus',
			'tax_id' => '242159'
		),
		'ome' => array(
			'species' => 'ome',
			'common_name' => 'Ostreococcus mediterraneus',
			'tax_id' => '1486918'
		),
		'orcc809' => array(
			'species' => 'orcc809',
			'common_name' => 'Ostreococcus sp RCC809',
			'tax_id' => '385169'
		),
		'ota' => array(
			'species' => 'ota',
			'common_name' => 'Ostreococcus tauri',
			'tax_id' => '70448'
		),
		'pte' => array(
			'species' => 'pte',
			'common_name' => 'Paramecium tetraurelia',
			'tax_id' => '5888'
		),
		'ptri' => array(
			'species' => 'ptri',
			'common_name' => 'Phaeodactylum tricornutum',
			'tax_id' => '2850'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrella patens',
			'tax_id' => '3218'
		),
		'phs' => array(
			'species' => 'phs',
			'common_name' => 'Phytophtora sojae',
			'tax_id' => '67593'
		),
		'pse3' => array(
			'species' => 'pse3',
			'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
			'tax_id' => '1470871'
		),
		'prcc4223' => array(
			'species' => 'prcc4223',
			'common_name' => 'Picochlorum_RCC4223',
			'tax_id' => '249344'
		),
		'sac' => array(
			'species' => 'sac',
			'common_name' => 'Saccharomyces cerevisiae strain S288C',
			'tax_id' => '4932'
		),
		'scp' => array(
			'species' => 'scp',
			'common_name' => 'Schizosaccharomyces pombe',
			'tax_id' => '4896'
		),
		'tps' => array(
			'species' => 'tps',
			'common_name' => 'Thalassiosira pseudonana',
			'tax_id' => '35128'
		),
		'vca' => array(
			'species' => 'vca',
			'common_name' => 'Volvox carteri',
			'tax_id' => '3067'
		)
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'prefix' => 'HOM',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'homology',
			'parent_id' => ''
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'prefix' => 'ORTH',
			'gene_type' => 'coding',
			'method' => '{}',
			'ancestry' => 'orthology',
			'parent_id' => 'HOMFAM'
		)
	),
	'gene_family_types_configuration' => array(),
	'data_identifier' => 'CR15G00540',
	'data_type' => 'gene_id',
	'allow_async_use' => true,
	'gene_placeholder' => 'DDB_G0279925',
	'gf_placeholder' => 'HOM03P000627',
	'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$similarity_hits_genes = array(
	'CR15G00540' => array(
		'gene_id' => 'CR15G00540',
		'e_value' => '0.0',
		'bit_score' => '550',
		'alignment_length' => '273',
		'identity_percentage' => '100.00',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'VC00G105800' => array(
		'gene_id' => 'VC00G105800',
		'e_value' => '3e-113',
		'bit_score' => '334',
		'alignment_length' => '243',
		'identity_percentage' => '76.54',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'CV00G63120' => array(
		'gene_id' => 'CV00G63120',
		'e_value' => '9e-106',
		'bit_score' => '314',
		'alignment_length' => '209',
		'identity_percentage' => '72.73',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'CNC64A_002G04430' => array(
		'gene_id' => 'CNC64A_002G04430',
		'e_value' => '2e-104',
		'bit_score' => '311',
		'alignment_length' => '215',
		'identity_percentage' => '72.56',
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AP00G18340' => array(
		'gene_id' => 'AP00G18340',
		'e_value' => '2e-99',
		'bit_score' => '297',
		'alignment_length' => '205',
		'identity_percentage' => '68.78',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'HE0000G24210' => array(
		'gene_id' => 'HE0000G24210',
		'e_value' => '6e-99',
		'bit_score' => '298',
		'alignment_length' => '257',
		'identity_percentage' => '62.26',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'BPRRCC1105_04G02020' => array(
		'gene_id' => 'BPRRCC1105_04G02020',
		'e_value' => '1e-93',
		'bit_score' => '286',
		'alignment_length' => '202',
		'identity_percentage' => '66.83',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'MP09G02920' => array(
		'gene_id' => 'MP09G02920',
		'e_value' => '2e-93',
		'bit_score' => '285',
		'alignment_length' => '206',
		'identity_percentage' => '67.96',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ORCC809_13G00520' => array(
		'gene_id' => 'ORCC809_13G00520',
		'e_value' => '2e-92',
		'bit_score' => '280',
		'alignment_length' => '227',
		'identity_percentage' => '61.23',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OL21G00500' => array(
		'gene_id' => 'OL21G00500',
		'e_value' => '3e-92',
		'bit_score' => '280',
		'alignment_length' => '202',
		'identity_percentage' => '64.85',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OL13G02500' => array(
		'gene_id' => 'OL13G02500',
		'e_value' => '3e-92',
		'bit_score' => '280',
		'alignment_length' => '202',
		'identity_percentage' => '64.85',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'MRCC299_06G02830' => array(
		'gene_id' => 'MRCC299_06G02830',
		'e_value' => '5e-92',
		'bit_score' => '280',
		'alignment_length' => '270',
		'identity_percentage' => '57.78',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OM_08G01820' => array(
		'gene_id' => 'OM_08G01820',
		'e_value' => '2e-90',
		'bit_score' => '275',
		'alignment_length' => '211',
		'identity_percentage' => '61.61',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AC00G11450' => array(
		'gene_id' => 'AC00G11450',
		'e_value' => '5e-90',
		'bit_score' => '275',
		'alignment_length' => '223',
		'identity_percentage' => '62.33',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OT_13G02650' => array(
		'gene_id' => 'OT_13G02650',
		'e_value' => '3e-88',
		'bit_score' => '269',
		'alignment_length' => '216',
		'identity_percentage' => '60.19',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'PP00068G01090' => array(
		'gene_id' => 'PP00068G01090',
		'e_value' => '3e-87',
		'bit_score' => '267',
		'alignment_length' => '224',
		'identity_percentage' => '59.82',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'PP00226G00370' => array(
		'gene_id' => 'PP00226G00370',
		'e_value' => '9e-83',
		'bit_score' => '255',
		'alignment_length' => '218',
		'identity_percentage' => '57.34',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ATR_00062G00960' => array(
		'gene_id' => 'ATR_00062G00960',
		'e_value' => '1e-81',
		'bit_score' => '253',
		'alignment_length' => '224',
		'identity_percentage' => '55.36',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'PI00G03570' => array(
		'gene_id' => 'PI00G03570',
		'e_value' => '1e-81',
		'bit_score' => '252',
		'alignment_length' => '207',
		'identity_percentage' => '57.97',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'RCC4223.05g04730' => array(
		'gene_id' => 'RCC4223.05g04730',
		'e_value' => '2e-81',
		'bit_score' => '251',
		'alignment_length' => '207',
		'identity_percentage' => '58.45',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'OS03G63520' => array(
		'gene_id' => 'OS03G63520',
		'e_value' => '6e-78',
		'bit_score' => '243',
		'alignment_length' => '248',
		'identity_percentage' => '50.81',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AT4G04860' => array(
		'gene_id' => 'AT4G04860',
		'e_value' => '3e-76',
		'bit_score' => '239',
		'alignment_length' => '228',
		'identity_percentage' => '52.19',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AT4G21810' => array(
		'gene_id' => 'AT4G21810',
		'e_value' => '3e-73',
		'bit_score' => '231',
		'alignment_length' => '228',
		'identity_percentage' => '51.75',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'phs173810' => array(
		'gene_id' => 'phs173810',
		'e_value' => '6e-73',
		'bit_score' => '230',
		'alignment_length' => '248',
		'identity_percentage' => '49.19',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'Naga_100004g172' => array(
		'gene_id' => 'Naga_100004g172',
		'e_value' => '3e-71',
		'bit_score' => '229',
		'alignment_length' => '245',
		'identity_percentage' => '50.61',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'emh659390' => array(
		'gene_id' => 'emh659390',
		'e_value' => '8e-69',
		'bit_score' => '219',
		'alignment_length' => '213',
		'identity_percentage' => '55.40',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'TP06G07000' => array(
		'gene_id' => 'TP06G07000',
		'e_value' => '2e-68',
		'bit_score' => '218',
		'alignment_length' => '204',
		'identity_percentage' => '52.45',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AA0023G00650' => array(
		'gene_id' => 'AA0023G00650',
		'e_value' => '2e-68',
		'bit_score' => '216',
		'alignment_length' => '189',
		'identity_percentage' => '55.03',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'PTI_12G00180' => array(
		'gene_id' => 'PTI_12G00180',
		'e_value' => '1e-61',
		'bit_score' => '201',
		'alignment_length' => '206',
		'identity_percentage' => '47.09',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'FC027G02270' => array(
		'gene_id' => 'FC027G02270',
		'e_value' => '2e-61',
		'bit_score' => '200',
		'alignment_length' => '198',
		'identity_percentage' => '49.49',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'FBgn0038438' => array(
		'gene_id' => 'FBgn0038438',
		'e_value' => '4e-59',
		'bit_score' => '195',
		'alignment_length' => '200',
		'identity_percentage' => '47.00',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'gsu16030' => array(
		'gene_id' => 'gsu16030',
		'e_value' => '5e-59',
		'bit_score' => '193',
		'alignment_length' => '177',
		'identity_percentage' => '55.93',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ES0334G00070' => array(
		'gene_id' => 'ES0334G00070',
		'e_value' => '2e-56',
		'bit_score' => '188',
		'alignment_length' => '214',
		'identity_percentage' => '47.20',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ENSMUSG00000009092' => array(
		'gene_id' => 'ENSMUSG00000009092',
		'e_value' => '2e-55',
		'bit_score' => '184',
		'alignment_length' => '222',
		'identity_percentage' => '47.75',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'CM11G01620' => array(
		'gene_id' => 'CM11G01620',
		'e_value' => '3e-55',
		'bit_score' => '184',
		'alignment_length' => '218',
		'identity_percentage' => '48.62',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ENSG00000099958' => array(
		'gene_id' => 'ENSG00000099958',
		'e_value' => '8e-55',
		'bit_score' => '183',
		'alignment_length' => '196',
		'identity_percentage' => '51.02',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'ENSG00000274437' => array(
		'gene_id' => 'ENSG00000274437',
		'e_value' => '8e-55',
		'bit_score' => '183',
		'alignment_length' => '196',
		'identity_percentage' => '51.02',
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'emh645640' => array(
		'gene_id' => 'emh645640',
		'e_value' => '2e-54',
		'bit_score' => '181',
		'alignment_length' => '166',
		'identity_percentage' => '56.02',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'DDB_G0285131' => array(
		'gene_id' => 'DDB_G0285131',
		'e_value' => '2e-52',
		'bit_score' => '177',
		'alignment_length' => '210',
		'identity_percentage' => '43.81',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'WBGene00020109' => array(
		'gene_id' => 'WBGene00020109',
		'e_value' => '5e-48',
		'bit_score' => '166',
		'alignment_length' => '222',
		'identity_percentage' => '45.95',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'AT4G29330' => array(
		'gene_id' => 'AT4G29330',
		'e_value' => '5e-38',
		'bit_score' => '140',
		'alignment_length' => '197',
		'identity_percentage' => '37.06',
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'BPRRCC1105_07G00150' => array(
		'gene_id' => 'BPRRCC1105_07G00150',
		'e_value' => '1e-36',
		'bit_score' => '136',
		'alignment_length' => '241',
		'identity_percentage' => '34.85',
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'OS05G09550' => array(
		'gene_id' => 'OS05G09550',
		'e_value' => '2e-36',
		'bit_score' => '135',
		'alignment_length' => '220',
		'identity_percentage' => '35.45',
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'PP00213G00320' => array(
		'gene_id' => 'PP00213G00320',
		'e_value' => '4e-36',
		'bit_score' => '134',
		'alignment_length' => '215',
		'identity_percentage' => '35.35',
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'phs171120' => array(
		'gene_id' => 'phs171120',
		'e_value' => '8e-36',
		'bit_score' => '134',
		'alignment_length' => '215',
		'identity_percentage' => '37.21',
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'AC00G88370' => array(
		'gene_id' => 'AC00G88370',
		'e_value' => '2e-34',
		'bit_score' => '129',
		'alignment_length' => '196',
		'identity_percentage' => '37.24',
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'emh750850' => array(
		'gene_id' => 'emh750850',
		'e_value' => '1e-33',
		'bit_score' => '128',
		'alignment_length' => '198',
		'identity_percentage' => '38.38',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'MRCC299_01G00860' => array(
		'gene_id' => 'MRCC299_01G00860',
		'e_value' => '1e-33',
		'bit_score' => '129',
		'alignment_length' => '185',
		'identity_percentage' => '37.30',
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'CV00G18750' => array(
		'gene_id' => 'CV00G18750',
		'e_value' => '7e-33',
		'bit_score' => '126',
		'alignment_length' => '220',
		'identity_percentage' => '35.91',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'CV00G18770' => array(
		'gene_id' => 'CV00G18770',
		'e_value' => '8e-33',
		'bit_score' => '126',
		'alignment_length' => '220',
		'identity_percentage' => '35.91',
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'ATR_00056G01300' => array(
		'gene_id' => 'ATR_00056G01300',
		'e_value' => '1e-32',
		'bit_score' => '125',
		'alignment_length' => '222',
		'identity_percentage' => '35.59',
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'OT_03G06050' => array(
		'gene_id' => 'OT_03G06050',
		'e_value' => '2e-32',
		'bit_score' => '125',
		'alignment_length' => '227',
		'identity_percentage' => '34.80',
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'OM_07G04780' => array(
		'gene_id' => 'OM_07G04780',
		'e_value' => '5e-32',
		'bit_score' => '124',
		'alignment_length' => '201',
		'identity_percentage' => '35.82',
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'MP01G00760' => array(
		'gene_id' => 'MP01G00760',
		'e_value' => '8e-32',
		'bit_score' => '123',
		'alignment_length' => '189',
		'identity_percentage' => '37.04',
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'ORCC809_06G06880' => array(
		'gene_id' => 'ORCC809_06G06880',
		'e_value' => '5e-28',
		'bit_score' => '113',
		'alignment_length' => '225',
		'identity_percentage' => '32.89',
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'OL03G05850' => array(
		'gene_id' => 'OL03G05850',
		'e_value' => '3e-26',
		'bit_score' => '107',
		'alignment_length' => '202',
		'identity_percentage' => '33.66',
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'PI00G24270' => array(
		'gene_id' => 'PI00G24270',
		'e_value' => '1e-25',
		'bit_score' => '106',
		'alignment_length' => '231',
		'identity_percentage' => '30.30',
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'VC00G131550' => array(
		'gene_id' => 'VC00G131550',
		'e_value' => '2e-25',
		'bit_score' => '106',
		'alignment_length' => '248',
		'identity_percentage' => '32.26',
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'Naga_100030g4' => array(
		'gene_id' => 'Naga_100030g4',
		'e_value' => '5e-25',
		'bit_score' => '105',
		'alignment_length' => '173',
		'identity_percentage' => '36.42',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'CR12G08730' => array(
		'gene_id' => 'CR12G08730',
		'e_value' => '3e-24',
		'bit_score' => '103',
		'alignment_length' => '190',
		'identity_percentage' => '33.68',
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P004757'
		)
	),
	'RCC4223.04g01340' => array(
		'gene_id' => 'RCC4223.04g01340',
		'e_value' => '4e-24',
		'bit_score' => '102',
		'alignment_length' => '231',
		'identity_percentage' => '29.87',
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'FBgn0031376' => array(
		'gene_id' => 'FBgn0031376',
		'e_value' => '5e-22',
		'bit_score' => '96.3',
		'alignment_length' => '243',
		'identity_percentage' => '28.40',
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'CM09G01590' => array(
		'gene_id' => 'CM09G01590',
		'e_value' => '5e-21',
		'bit_score' => '94.0',
		'alignment_length' => '251',
		'identity_percentage' => '28.69',
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'ENSMUSG00000022365' => array(
		'gene_id' => 'ENSMUSG00000022365',
		'e_value' => '1e-20',
		'bit_score' => '92.8',
		'alignment_length' => '231',
		'identity_percentage' => '30.30',
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'DDB_G0288833' => array(
		'gene_id' => 'DDB_G0288833',
		'e_value' => '1e-20',
		'bit_score' => '92.4',
		'alignment_length' => '241',
		'identity_percentage' => '26.14',
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'SPAC1687.17c' => array(
		'gene_id' => 'SPAC1687.17c',
		'e_value' => '5e-20',
		'bit_score' => '89.7',
		'alignment_length' => '180',
		'identity_percentage' => '29.44',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'WBGene00000843' => array(
		'gene_id' => 'WBGene00000843',
		'e_value' => '6e-20',
		'bit_score' => '90.5',
		'alignment_length' => '192',
		'identity_percentage' => '29.69',
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'Naga_100786g2' => array(
		'gene_id' => 'Naga_100786g2',
		'e_value' => '1e-18',
		'bit_score' => '89.0',
		'alignment_length' => '179',
		'identity_percentage' => '31.28',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'pte104470' => array(
		'gene_id' => 'pte104470',
		'e_value' => '1e-17',
		'bit_score' => '83.6',
		'alignment_length' => '207',
		'identity_percentage' => '27.54',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'CNC64A_167G00010' => array(
		'gene_id' => 'CNC64A_167G00010',
		'e_value' => '2e-17',
		'bit_score' => '82.8',
		'alignment_length' => '234',
		'identity_percentage' => '29.06',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'PTI_13G02740' => array(
		'gene_id' => 'PTI_13G02740',
		'e_value' => '3e-17',
		'bit_score' => '82.8',
		'alignment_length' => '265',
		'identity_percentage' => '26.79',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'PTI_09G00960' => array(
		'gene_id' => 'PTI_09G00960',
		'e_value' => '6e-17',
		'bit_score' => '82.8',
		'alignment_length' => '169',
		'identity_percentage' => '30.77',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'pte33160' => array(
		'gene_id' => 'pte33160',
		'e_value' => '6e-17',
		'bit_score' => '81.6',
		'alignment_length' => '185',
		'identity_percentage' => '30.81',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P044322'
		)
	),
	'TP06G04610' => array(
		'gene_id' => 'TP06G04610',
		'e_value' => '1e-16',
		'bit_score' => '80.1',
		'alignment_length' => '204',
		'identity_percentage' => '25.98',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'ES0180G00150' => array(
		'gene_id' => 'ES0180G00150',
		'e_value' => '4e-16',
		'bit_score' => '80.1',
		'alignment_length' => '208',
		'identity_percentage' => '32.21',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'AA0005G03020' => array(
		'gene_id' => 'AA0005G03020',
		'e_value' => '2e-15',
		'bit_score' => '74.3',
		'alignment_length' => '113',
		'identity_percentage' => '38.05',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'HE0000G41290' => array(
		'gene_id' => 'HE0000G41290',
		'e_value' => '2e-15',
		'bit_score' => '75.5',
		'alignment_length' => '139',
		'identity_percentage' => '32.37',
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'pte656850' => array(
		'gene_id' => 'pte656850',
		'e_value' => '3e-15',
		'bit_score' => '76.6',
		'alignment_length' => '184',
		'identity_percentage' => '28.26',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P044322'
		)
	),
	'AP00G39310' => array(
		'gene_id' => 'AP00G39310',
		'e_value' => '1e-14',
		'bit_score' => '74.7',
		'alignment_length' => '160',
		'identity_percentage' => '33.12',
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P020594'
		)
	),
	'pte422770' => array(
		'gene_id' => 'pte422770',
		'e_value' => '2e-14',
		'bit_score' => '73.9',
		'alignment_length' => '214',
		'identity_percentage' => '28.04',
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P000668'
		)
	),
	'TP04G07930' => array(
		'gene_id' => 'TP04G07930',
		'e_value' => '3e-14',
		'bit_score' => '72.4',
		'alignment_length' => '152',
		'identity_percentage' => '30.92',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'gsu96750' => array(
		'gene_id' => 'gsu96750',
		'e_value' => '4e-14',
		'bit_score' => '73.9',
		'alignment_length' => '227',
		'identity_percentage' => '32.16',
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'AA0011G01730' => array(
		'gene_id' => 'AA0011G01730',
		'e_value' => '3e-13',
		'bit_score' => '72.4',
		'alignment_length' => '195',
		'identity_percentage' => '28.72',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'FC012G02490' => array(
		'gene_id' => 'FC012G02490',
		'e_value' => '3e-13',
		'bit_score' => '71.2',
		'alignment_length' => '206',
		'identity_percentage' => '26.70',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P011192'
		)
	),
	'FC001G09060' => array(
		'gene_id' => 'FC001G09060',
		'e_value' => '6e-13',
		'bit_score' => '69.3',
		'alignment_length' => '155',
		'identity_percentage' => '29.03',
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'ES0149G00240' => array(
		'gene_id' => 'ES0149G00240',
		'e_value' => '9e-10',
		'bit_score' => '62.4',
		'alignment_length' => '229',
		'identity_percentage' => '25.76',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	),
	'emh724700' => array(
		'gene_id' => 'emh724700',
		'e_value' => '2e-09',
		'bit_score' => '61.6',
		'alignment_length' => '191',
		'identity_percentage' => '25.13',
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P077563'
		)
	),
	'SPBC365.08c' => array(
		'gene_id' => 'SPBC365.08c',
		'e_value' => '3e-09',
		'bit_score' => '59.7',
		'alignment_length' => '159',
		'identity_percentage' => '30.19',
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016428'
		)
	),
	'Naga_100052g22' => array(
		'gene_id' => 'Naga_100052g22',
		'e_value' => '7e-09',
		'bit_score' => '59.7',
		'alignment_length' => '195',
		'identity_percentage' => '23.59',
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	),
	'ES0048G00520' => array(
		'gene_id' => 'ES0048G00520',
		'e_value' => '2e-08',
		'bit_score' => '58.5',
		'alignment_length' => '132',
		'identity_percentage' => '33.33',
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016610'
		)
	),
	'TP13G01890' => array(
		'gene_id' => 'TP13G01890',
		'e_value' => '9e-08',
		'bit_score' => '55.1',
		'alignment_length' => '176',
		'identity_percentage' => '28.41',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	),
	'TP15G00800' => array(
		'gene_id' => 'TP15G00800',
		'e_value' => '1e-07',
		'bit_score' => '56.2',
		'alignment_length' => '211',
		'identity_percentage' => '27.96',
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P140795'
		)
	),
	'PTI_01G03290' => array(
		'gene_id' => 'PTI_01G03290',
		'e_value' => '4e-07',
		'bit_score' => '54.3',
		'alignment_length' => '216',
		'identity_percentage' => '26.85',
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	),
	'AA0010G01610' => array(
		'gene_id' => 'AA0010G01610',
		'e_value' => '3e-06',
		'bit_score' => '51.2',
		'alignment_length' => '163',
		'identity_percentage' => '26.99',
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'gf' => array(
			'HOMFAM' => 'HOM03P000487',
			'ORTHOFAM' => 'ORTHO03P016177'
		)
	)
)
$similarity_hits_species = array(
	'cre' => array(
		(int) 0 => 'CR15G00540',
		(int) 1 => 'CR12G08730'
	),
	'vca' => array(
		(int) 0 => 'VC00G105800',
		(int) 1 => 'VC00G131550'
	),
	'cvu' => array(
		(int) 0 => 'CV00G63120',
		(int) 1 => 'CV00G18750',
		(int) 2 => 'CV00G18770'
	),
	'cnc64a' => array(
		(int) 0 => 'CNC64A_002G04430'
	),
	'apr' => array(
		(int) 0 => 'AP00G18340',
		(int) 1 => 'AP00G39310'
	),
	'hsp' => array(
		(int) 0 => 'HE0000G24210',
		(int) 1 => 'HE0000G41290'
	),
	'bprrcc1105' => array(
		(int) 0 => 'BPRRCC1105_04G02020',
		(int) 1 => 'BPRRCC1105_07G00150'
	),
	'mpu' => array(
		(int) 0 => 'MP09G02920',
		(int) 1 => 'MP01G00760'
	),
	'orcc809' => array(
		(int) 0 => 'ORCC809_13G00520',
		(int) 1 => 'ORCC809_06G06880'
	),
	'olu' => array(
		(int) 0 => 'OL21G00500',
		(int) 1 => 'OL13G02500',
		(int) 2 => 'OL03G05850'
	),
	'mrcc299' => array(
		(int) 0 => 'MRCC299_06G02830',
		(int) 1 => 'MRCC299_01G00860'
	),
	'ome' => array(
		(int) 0 => 'OM_08G01820',
		(int) 1 => 'OM_07G04780'
	),
	'acg' => array(
		(int) 0 => 'AC00G11450',
		(int) 1 => 'AC00G88370'
	),
	'ota' => array(
		(int) 0 => 'OT_13G02650',
		(int) 1 => 'OT_03G06050'
	),
	'ppa' => array(
		(int) 0 => 'PP00068G01090',
		(int) 1 => 'PP00226G00370',
		(int) 2 => 'PP00213G00320'
	),
	'atr' => array(
		(int) 0 => 'ATR_00062G00960',
		(int) 1 => 'ATR_00056G01300'
	),
	'pse3' => array(
		(int) 0 => 'PI00G03570',
		(int) 1 => 'PI00G24270'
	),
	'prcc4223' => array(
		(int) 0 => 'RCC4223.05g04730',
		(int) 1 => 'RCC4223.04g01340'
	),
	'osa' => array(
		(int) 0 => 'OS03G63520',
		(int) 1 => 'OS05G09550'
	),
	'ath' => array(
		(int) 0 => 'AT4G04860',
		(int) 1 => 'AT4G21810',
		(int) 2 => 'AT4G29330'
	),
	'phs' => array(
		(int) 0 => 'phs173810',
		(int) 1 => 'phs171120'
	),
	'nga' => array(
		(int) 0 => 'Naga_100004g172',
		(int) 1 => 'Naga_100030g4',
		(int) 2 => 'Naga_100786g2',
		(int) 3 => 'Naga_100052g22'
	),
	'emh' => array(
		(int) 0 => 'emh659390',
		(int) 1 => 'emh645640',
		(int) 2 => 'emh750850',
		(int) 3 => 'emh724700'
	),
	'tps' => array(
		(int) 0 => 'TP06G07000',
		(int) 1 => 'TP06G04610',
		(int) 2 => 'TP04G07930',
		(int) 3 => 'TP13G01890',
		(int) 4 => 'TP15G00800'
	),
	'aan' => array(
		(int) 0 => 'AA0023G00650',
		(int) 1 => 'AA0005G03020',
		(int) 2 => 'AA0011G01730',
		(int) 3 => 'AA0010G01610'
	),
	'ptri' => array(
		(int) 0 => 'PTI_12G00180',
		(int) 1 => 'PTI_13G02740',
		(int) 2 => 'PTI_09G00960',
		(int) 3 => 'PTI_01G03290'
	),
	'fcy' => array(
		(int) 0 => 'FC027G02270',
		(int) 1 => 'FC012G02490',
		(int) 2 => 'FC001G09060'
	),
	'drm' => array(
		(int) 0 => 'FBgn0038438',
		(int) 1 => 'FBgn0031376'
	),
	'gsu' => array(
		(int) 0 => 'gsu16030',
		(int) 1 => 'gsu96750'
	),
	'esi' => array(
		(int) 0 => 'ES0334G00070',
		(int) 1 => 'ES0180G00150',
		(int) 2 => 'ES0149G00240',
		(int) 3 => 'ES0048G00520'
	),
	'mus' => array(
		(int) 0 => 'ENSMUSG00000009092',
		(int) 1 => 'ENSMUSG00000022365'
	),
	'cme' => array(
		(int) 0 => 'CM11G01620',
		(int) 1 => 'CM09G01590'
	),
	'hom' => array(
		(int) 0 => 'ENSG00000099958',
		(int) 1 => 'ENSG00000274437'
	),
	'ddi' => array(
		(int) 0 => 'DDB_G0285131',
		(int) 1 => 'DDB_G0288833'
	),
	'cel' => array(
		(int) 0 => 'WBGene00020109',
		(int) 1 => 'WBGene00000843'
	),
	'scp' => array(
		(int) 0 => 'SPAC1687.17c',
		(int) 1 => 'SPBC365.08c'
	),
	'pte' => array(
		(int) 0 => 'pte104470',
		(int) 1 => 'pte33160',
		(int) 2 => 'pte656850',
		(int) 3 => 'pte422770'
	)
)
$gene_id = 'CR15G00540'
$all_species_index = array(
	(int) 0 => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	(int) 1 => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	(int) 2 => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	(int) 3 => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	(int) 4 => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	(int) 5 => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	(int) 6 => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	(int) 7 => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	(int) 8 => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	(int) 9 => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	(int) 10 => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	(int) 11 => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	(int) 12 => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	(int) 13 => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	(int) 14 => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	(int) 15 => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	(int) 16 => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	(int) 17 => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	(int) 18 => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	(int) 19 => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	(int) 20 => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	(int) 21 => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	(int) 22 => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	(int) 23 => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	(int) 24 => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	(int) 25 => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	(int) 26 => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	(int) 27 => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	(int) 28 => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	(int) 29 => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	(int) 30 => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	(int) 31 => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	(int) 32 => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	(int) 33 => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	(int) 34 => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	(int) 35 => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	(int) 36 => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	(int) 37 => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	(int) 38 => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$all_species = array(
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702'
	),
	'acg' => array(
		'species' => 'acg',
		'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
		'tax_id' => '763042'
	),
	'aan' => array(
		'species' => 'aan',
		'common_name' => 'Aureococcus anophagefferens',
		'tax_id' => '44056'
	),
	'apr' => array(
		'species' => 'apr',
		'common_name' => 'Auxenochlorella protothecoides',
		'tax_id' => '3075'
	),
	'bprrcc1105' => array(
		'species' => 'bprrcc1105',
		'common_name' => 'Bathycoccus prasinos',
		'tax_id' => '41875'
	),
	'cel' => array(
		'species' => 'cel',
		'common_name' => 'Caenorhabditis elegans',
		'tax_id' => '6239'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055'
	),
	'cnc64a' => array(
		'species' => 'cnc64a',
		'common_name' => 'Chlorella sp NC64A',
		'tax_id' => '310507'
	),
	'ccr' => array(
		'species' => 'ccr',
		'common_name' => 'Chondrus crispus',
		'tax_id' => '2769'
	),
	'cvu' => array(
		'species' => 'cvu',
		'common_name' => 'Coccomyxa subellipsoidea C-169',
		'tax_id' => '574566'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cyanidioschyzon merolae',
		'tax_id' => '45157'
	),
	'ddi' => array(
		'species' => 'ddi',
		'common_name' => 'Dictyostelium discoideum',
		'tax_id' => '44689'
	),
	'drm' => array(
		'species' => 'drm',
		'common_name' => 'Drosophila melanogaster',
		'tax_id' => '7227'
	),
	'esi' => array(
		'species' => 'esi',
		'common_name' => 'Ectocarpus siliculosus',
		'tax_id' => '2880'
	),
	'emh' => array(
		'species' => 'emh',
		'common_name' => 'Emiliania huxleyi',
		'tax_id' => '280463'
	),
	'fcy' => array(
		'species' => 'fcy',
		'common_name' => 'Fragilariopsis cylindrus',
		'tax_id' => '186039'
	),
	'gsu' => array(
		'species' => 'gsu',
		'common_name' => 'Galdieria sulphuraria',
		'tax_id' => '130081'
	),
	'hsp' => array(
		'species' => 'hsp',
		'common_name' => 'Helicosporidium sp. ',
		'tax_id' => '145475'
	),
	'hom' => array(
		'species' => 'hom',
		'common_name' => 'Homo sapiens',
		'tax_id' => '9606'
	),
	'mpu' => array(
		'species' => 'mpu',
		'common_name' => 'Micromonas pusilla strain CCMP1545',
		'tax_id' => '564608'
	),
	'mrcc299' => array(
		'species' => 'mrcc299',
		'common_name' => 'Micromonas sp RCC299',
		'tax_id' => '296587'
	),
	'mus' => array(
		'species' => 'mus',
		'common_name' => 'Mus musculus',
		'tax_id' => '10090'
	),
	'nga' => array(
		'species' => 'nga',
		'common_name' => 'Nannochloropsis gaditana',
		'tax_id' => '72520'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa',
		'tax_id' => '4530'
	),
	'olu' => array(
		'species' => 'olu',
		'common_name' => 'Ostreococcus lucimarinus',
		'tax_id' => '242159'
	),
	'ome' => array(
		'species' => 'ome',
		'common_name' => 'Ostreococcus mediterraneus',
		'tax_id' => '1486918'
	),
	'orcc809' => array(
		'species' => 'orcc809',
		'common_name' => 'Ostreococcus sp RCC809',
		'tax_id' => '385169'
	),
	'ota' => array(
		'species' => 'ota',
		'common_name' => 'Ostreococcus tauri',
		'tax_id' => '70448'
	),
	'pte' => array(
		'species' => 'pte',
		'common_name' => 'Paramecium tetraurelia',
		'tax_id' => '5888'
	),
	'ptri' => array(
		'species' => 'ptri',
		'common_name' => 'Phaeodactylum tricornutum',
		'tax_id' => '2850'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrella patens',
		'tax_id' => '3218'
	),
	'phs' => array(
		'species' => 'phs',
		'common_name' => 'Phytophtora sojae',
		'tax_id' => '67593'
	),
	'pse3' => array(
		'species' => 'pse3',
		'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
		'tax_id' => '1470871'
	),
	'prcc4223' => array(
		'species' => 'prcc4223',
		'common_name' => 'Picochlorum_RCC4223',
		'tax_id' => '249344'
	),
	'sac' => array(
		'species' => 'sac',
		'common_name' => 'Saccharomyces cerevisiae strain S288C',
		'tax_id' => '4932'
	),
	'scp' => array(
		'species' => 'scp',
		'common_name' => 'Schizosaccharomyces pombe',
		'tax_id' => '4896'
	),
	'tps' => array(
		'species' => 'tps',
		'common_name' => 'Thalassiosira pseudonana',
		'tax_id' => '35128'
	),
	'vca' => array(
		'species' => 'vca',
		'common_name' => 'Volvox carteri',
		'tax_id' => '3067'
	)
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'prefix' => 'HOM',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'homology',
		'parent_id' => ''
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'prefix' => 'ORTH',
		'gene_type' => 'coding',
		'method' => '{}',
		'ancestry' => 'orthology',
		'parent_id' => 'HOMFAM'
	)
)
$gene_family_types_configuration = array()
$data_identifier = 'CR15G00540'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'DDB_G0279925'
$gf_placeholder = 'HOM03P000627'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
	'gene_id' => 'CNC64A_167G00010',
	'e_value' => '2e-17',
	'bit_score' => '82.8',
	'alignment_length' => '234',
	'identity_percentage' => '29.06',
	'gf' => array(
		'HOMFAM' => 'HOM03P000487',
		'ORTHOFAM' => 'ORTHO03P020594'
	)
)
$checked = null
$similarity_hit_gene = 'CNC64A_167G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146