Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ATR_04066G00010	Amborella trichopoda	2e-174	486	233	100.00
AT5G01210	Arabidopsis thaliana	1e-68	225	249	46.18
AT5G42830	Arabidopsis thaliana	1e-68	224	227	48.02
AT5G07850	Arabidopsis thaliana	6e-68	222	225	48.89
AT5G07860	Arabidopsis thaliana	5e-67	219	228	50.00
AT5G07870	Arabidopsis thaliana	2e-65	216	228	48.25
AT2G39980	Arabidopsis thaliana	2e-64	214	185	54.05
ATR_00035G00400	Amborella trichopoda	5e-63	209	223	47.53
ATR_04066G00020	Amborella trichopoda	6e-61	202	116	84.48
OS01G63480	Oryza sativa	4e-58	197	235	47.66
OS06G01350	Oryza sativa	2e-57	194	236	47.03
OS05G37660	Oryza sativa	3e-57	195	235	48.51
OS11G13970	Oryza sativa	3e-56	192	233	46.78
OS08G02020	Oryza sativa	3e-53	184	224	45.54
ATR_00029G03400	Amborella trichopoda	8e-53	184	185	47.03
ATR_00035G00470	Amborella trichopoda	3e-52	181	215	41.86
AT5G67150	Arabidopsis thaliana	3e-50	176	218	41.74
ATR_00035G00260	Amborella trichopoda	6e-50	169	213	42.72
ATR_00019G02930	Amborella trichopoda	2e-49	167	134	61.19
OS08G02030	Oryza sativa	7e-49	172	217	46.08
OS08G01960	Oryza sativa	2e-48	172	230	40.87
OS08G01950	Oryza sativa	2e-48	171	231	39.39
OS08G01980	Oryza sativa	1e-46	166	229	42.36
OS08G44840	Oryza sativa	1e-45	163	212	43.87
AT5G23940	Arabidopsis thaliana	2e-45	164	214	39.72
AT3G50280	Arabidopsis thaliana	4e-44	159	220	40.91
ATR_00009G01680	Amborella trichopoda	1e-43	159	216	37.50
AT3G50270	Arabidopsis thaliana	4e-43	156	224	38.39
OS04G30570	Oryza sativa	1e-42	155	228	39.47
ATR_00006G02240	Amborella trichopoda	4e-42	148	220	40.00
OS07G04970	Oryza sativa	5e-42	154	220	44.55
AT5G67160	Arabidopsis thaliana	2e-40	149	223	37.67
AT3G50300	Arabidopsis thaliana	6e-40	148	221	40.72
AT5G38130	Arabidopsis thaliana	1e-37	142	212	38.68
ATR_04066G00030	Amborella trichopoda	4e-32	118	66	83.33
AT3G50290	Arabidopsis thaliana	1e-26	108	168	41.07
PP00097G01170	Physcomitrella patens	6e-25	105	215	32.09
OS04G30600	Oryza sativa	7e-22	93.6	91	49.45
AT2G19070	Arabidopsis thaliana	1e-20	94.0	210	31.43
PP00022G00830	Physcomitrella patens	4e-20	91.7	171	33.33
PP00015G01970	Physcomitrella patens	2e-19	90.1	215	29.77
ATR_00137G00320	Amborella trichopoda	8e-18	85.9	164	32.93
PP00150G00620	Physcomitrella patens	1e-17	85.1	144	34.72
PP00465G00160	Physcomitrella patens	1e-17	85.1	221	27.60
PP00266G00190	Physcomitrella patens	2e-17	84.7	214	28.97
PP00064G00170	Physcomitrella patens	2e-17	84.3	214	28.97
PP00275G00350	Physcomitrella patens	3e-17	84.0	214	29.44
AT5G48930	Arabidopsis thaliana	5e-17	83.6	209	29.67
OS11G31090	Oryza sativa	5e-15	77.8	179	31.28
ATR_00727G00010	Amborella trichopoda	5e-15	75.5	207	28.99
AT3G48720	Arabidopsis thaliana	9e-15	76.6	175	28.57
PP00004G00910	Physcomitrella patens	1e-14	76.6	203	27.09
ATR_00016G01840	Amborella trichopoda	1e-14	76.6	149	29.53
AT5G41040	Arabidopsis thaliana	4e-14	75.1	170	28.24
ATR_00025G03470	Amborella trichopoda	4e-14	74.7	206	30.10
ATR_00002G04100	Amborella trichopoda	1e-13	73.6	213	28.17
OS04G42250	Oryza sativa	2e-13	72.8	214	27.10
PP00016G01200	Physcomitrella patens	2e-13	72.8	141	29.79
PP00001G00820	Physcomitrella patens	6e-13	71.2	153	30.07
ATR_00002G04070	Amborella trichopoda	7e-13	70.9	210	29.52
OS09G25460	Oryza sativa	1e-12	70.5	139	34.53
AT3G29590	Arabidopsis thaliana	3e-12	69.3	179	28.49
ATR_00002G04060	Amborella trichopoda	3e-12	69.3	168	32.14
OS06G49660	Oryza sativa	4e-12	68.9	216	25.93
ATR_00002G04090	Amborella trichopoda	6e-12	67.0	212	26.89
OS01G18620	Oryza sativa	2e-11	67.4	179	29.05
AT1G78990	Arabidopsis thaliana	2e-11	67.0	185	26.49
ATR_00025G03290	Amborella trichopoda	2e-11	64.7	171	28.07
OS03G47860	Oryza sativa	3e-11	65.9	200	28.50
ATR_00002G04080	Amborella trichopoda	3e-11	65.9	218	25.23
ATR_00002G04110	Amborella trichopoda	4e-11	65.9	217	26.73
OS02G39850	Oryza sativa	4e-11	65.9	215	25.58
AT5G63560	Arabidopsis thaliana	6e-11	65.1	171	27.49
AT1G32910	Arabidopsis thaliana	7e-11	65.1	173	24.86
OS06G05300	Oryza sativa	7e-11	65.1	217	27.19
PP00054G01450	Physcomitrella patens	9e-11	64.7	182	29.12
OS06G08640	Oryza sativa	9e-11	64.7	173	32.37
OS08G43040	Oryza sativa	2e-10	63.5	185	25.41
ATR_00047G00390	Amborella trichopoda	2e-10	63.5	133	29.32
AT5G16410	Arabidopsis thaliana	5e-10	62.4	174	24.14
OS06G06180	Oryza sativa	5e-10	62.4	166	27.71
AT5G39050	Arabidopsis thaliana	6e-10	62.4	180	27.22
OS06G08580	Oryza sativa	7e-10	62.0	192	30.21
ATR_00038G00220	Amborella trichopoda	9e-10	61.6	168	31.55
OS03G45740	Oryza sativa	2e-09	60.8	192	23.44
OS04G56910	Oryza sativa	3e-09	60.5	198	27.27
OS09G37180	Oryza sativa	5e-09	59.3	167	29.34
AT5G39080	Arabidopsis thaliana	5e-09	59.3	176	27.27
OS09G37200	Oryza sativa	7e-09	58.9	167	31.14
OS02G57480	Oryza sativa	1e-08	58.5	142	31.69
OS05G04930	Oryza sativa	1e-08	58.2	165	29.09
ATR_00002G04130	Amborella trichopoda	1e-08	58.2	166	32.53
OS01G24790	Oryza sativa	2e-08	58.2	166	31.33
phs360300	Phytophtora sojae	2e-08	57.8	244	25.82
OS10G26290	Oryza sativa	3e-08	57.4	211	28.91
OS08G10420	Oryza sativa	3e-08	57.0	234	22.65
OS02G28340	Oryza sativa	4e-08	57.0	186	29.03
AT5G61160	Arabidopsis thaliana	4e-08	56.6	193	23.83
ATR_00011G02020	Amborella trichopoda	6e-08	56.2	161	25.47
OS08G07720	Oryza sativa	7e-08	56.2	221	28.05
OS03G08720	Oryza sativa	8e-08	55.8	105	30.48
AT5G07080	Arabidopsis thaliana	8e-08	55.8	107	29.91
AT3G03480	Arabidopsis thaliana	8e-08	55.8	169	24.85
AT2G40230	Arabidopsis thaliana	9e-08	55.8	183	26.23
AT3G26040	Arabidopsis thaliana	2e-07	54.7	229	24.89
OS02G28410	Oryza sativa	2e-07	54.7	144	27.08
PP00054G01420	Physcomitrella patens	3e-07	54.3	180	24.44
ATR_00058G01960	Amborella trichopoda	5e-07	53.5	165	27.27
AT3G29670	Arabidopsis thaliana	5e-07	53.5	169	23.67
OS02G28300	Oryza sativa	5e-07	53.5	142	30.28
OS06G05320	Oryza sativa	6e-07	53.5	220	25.91
OS06G05284	Oryza sativa	6e-07	53.1	180	28.33
OS11G07960	Oryza sativa	7e-07	53.1	171	26.90
ATR_00045G00990	Amborella trichopoda	9e-07	52.8	168	25.60
ATR_00038G00270	Amborella trichopoda	1e-06	52.4	119	30.25
OS10G23310	Oryza sativa	1e-06	52.4	105	29.52
OS07G23960	Oryza sativa	2e-06	51.6	153	25.49
AT3G30280	Arabidopsis thaliana	2e-06	51.6	240	23.75
AT3G47170	Arabidopsis thaliana	3e-06	51.2	114	24.56
AT1G28680	Arabidopsis thaliana	3e-06	51.2	138	25.36
OS06G05310	Oryza sativa	5e-06	50.4	219	24.66
OS05G22300	Oryza sativa	6e-06	50.4	171	28.07
OS05G08640	Oryza sativa	7e-06	50.1	152	23.03
OS07G23150	Oryza sativa	8e-06	50.1	150	27.33
ATR_00058G01950	Amborella trichopoda	8e-06	50.1	200	25.50
OS10G23820	Oryza sativa	8e-06	50.1	105	30.48

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment