Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ATR_00048G00580	Amborella trichopoda	0.0	620	296	100.00
AT2G01850	Arabidopsis thaliana	9e-118	349	271	62.36
AT1G14720	Arabidopsis thaliana	2e-117	348	279	58.06
ATR_00024G00080	Amborella trichopoda	1e-116	346	276	60.51
AT1G32170	Arabidopsis thaliana	4e-116	345	267	61.05
OS02G03550	Oryza sativa	5e-108	324	259	61.00
OS10G02770	Oryza sativa	3e-105	317	255	60.39
OS03G13570	Oryza sativa	4e-104	314	274	56.57
AT4G18990	Arabidopsis thaliana	7e-99	301	273	53.85
OS09G23220	Oryza sativa	5e-95	291	224	61.61
OS02G46910	Oryza sativa	1e-92	285	269	55.02
OS03G63760	Oryza sativa	2e-91	282	251	54.98
OS10G42670	Oryza sativa	2e-84	263	252	55.95
PP00074G00080	Physcomitrella patens	7e-71	232	226	51.33
AT1G10550	Arabidopsis thaliana	1e-67	220	232	45.69
ATR_00013G00910	Amborella trichopoda	1e-67	217	226	48.67
PP00005G00910	Physcomitrella patens	1e-65	218	242	46.28
OS03G01800	Oryza sativa	5e-58	195	223	44.39
AT4G13090	Arabidopsis thaliana	6e-58	194	229	46.29
OS02G57770	Oryza sativa	1e-57	194	225	46.22
AT4G13080	Arabidopsis thaliana	3e-54	184	221	42.99
ATR_00082G00420	Amborella trichopoda	9e-54	183	217	44.70
AT3G25050	Arabidopsis thaliana	1e-52	180	253	41.90
OS07G29750	Oryza sativa	2e-52	180	224	43.30
OS10G39840	Oryza sativa	2e-52	180	222	42.34
PP00168G00160	Physcomitrella patens	9e-50	173	238	39.08
PP00004G00260	Physcomitrella patens	1e-49	173	222	41.44
AT2G36870	Arabidopsis thaliana	2e-49	172	223	43.05
AT3G44990	Arabidopsis thaliana	3e-49	171	223	40.81
PP00004G00240	Physcomitrella patens	4e-49	171	226	40.27
AT5G13870	Arabidopsis thaliana	9e-49	170	221	38.46
AT2G06850	Arabidopsis thaliana	3e-48	169	221	39.37
OS06G48180	Oryza sativa	4e-48	168	233	39.06
AT5G65730	Arabidopsis thaliana	4e-48	168	221	41.63
ATR_00004G02430	Amborella trichopoda	9e-48	167	226	39.82
ATR_00026G01160	Amborella trichopoda	1e-47	167	221	42.99
PP00309G00220	Physcomitrella patens	1e-47	167	231	40.26
ATR_00016G02940	Amborella trichopoda	2e-47	167	222	37.84
PP00026G00650	Physcomitrella patens	3e-47	166	228	41.67
PP00195G00150	Physcomitrella patens	3e-47	166	231	42.42
PP00309G00230	Physcomitrella patens	3e-47	166	235	40.00
PP00168G00050	Physcomitrella patens	4e-47	166	225	38.67
ATR_00019G03550	Amborella trichopoda	8e-47	165	222	42.34
AT4G37800	Arabidopsis thaliana	3e-46	164	221	41.63
AT1G11545	Arabidopsis thaliana	3e-46	164	229	37.12
AT4G03210	Arabidopsis thaliana	3e-46	163	223	39.01
OS06G13040	Oryza sativa	5e-46	163	228	39.04
ATR_00026G01110	Amborella trichopoda	3e-45	159	212	42.45
OS07G34580	Oryza sativa	3e-45	161	227	39.21
OS06G48160	Oryza sativa	1e-44	159	233	38.20
OS11G33270	Oryza sativa	2e-44	159	221	38.91
OS08G13980	Oryza sativa	7e-44	157	252	35.71
OS06G48170	Oryza sativa	1e-43	157	232	35.34
ATR_00453G00010	Amborella trichopoda	1e-43	157	232	37.93
OS06G48200	Oryza sativa	2e-43	156	238	35.29
AT5G57550	Arabidopsis thaliana	4e-43	155	226	38.05
PP00309G00140	Physcomitrella patens	7e-43	155	224	38.84
AT4G30290	Arabidopsis thaliana	1e-42	153	222	37.39
OS04G51460	Oryza sativa	2e-42	153	223	35.43
AT1G65310	Arabidopsis thaliana	2e-42	153	224	38.39
AT4G30280	Arabidopsis thaliana	3e-42	152	222	37.39
AT4G25810	Arabidopsis thaliana	5e-42	152	231	37.66
AT4G14130	Arabidopsis thaliana	5e-42	152	222	37.84
OS04G51450	Oryza sativa	3e-41	151	226	36.73
OS08G14200	Oryza sativa	3e-41	150	235	35.32
AT2G14620	Arabidopsis thaliana	3e-41	150	233	38.20
AT2G18800	Arabidopsis thaliana	5e-41	150	235	36.60
ATR_00026G01070	Amborella trichopoda	7e-41	149	225	38.22
AT5G48070	Arabidopsis thaliana	7e-41	149	222	36.49
AT4G30270	Arabidopsis thaliana	1e-40	148	225	36.00
AT5G57560	Arabidopsis thaliana	1e-40	148	230	35.65
OS08G13920	Oryza sativa	2e-40	148	234	36.75
AT3G23730	Arabidopsis thaliana	3e-40	147	229	37.55
OS08G14210	Oryza sativa	3e-40	149	222	36.94
ATR_00062G00020	Amborella trichopoda	6e-40	146	227	36.12
PP00291G00470	Physcomitrella patens	1e-39	147	225	37.78
ATR_00062G00050	Amborella trichopoda	1e-39	146	225	36.00
PP00618G00010	Physcomitrella patens	1e-39	149	225	38.22
PP00410G00130	Physcomitrella patens	1e-39	146	229	35.81
AT5G57540	Arabidopsis thaliana	2e-39	145	225	36.00
AT5G57530	Arabidopsis thaliana	2e-39	145	228	36.40
PP00193G00050	Physcomitrella patens	2e-39	147	257	36.58
ATR_00065G01770	Amborella trichopoda	2e-39	145	226	40.27
ATR_00019G03570	Amborella trichopoda	9e-39	143	226	36.73
PP00122G00290	Physcomitrella patens	2e-38	143	227	37.00
PP00156G00440	Physcomitrella patens	2e-38	142	235	34.47
PP00156G00420	Physcomitrella patens	2e-38	142	235	34.47
PP00486G00100	Physcomitrella patens	3e-38	142	219	37.44
PP00486G00080	Physcomitrella patens	3e-38	142	219	37.44
PP00272G00150	Physcomitrella patens	4e-38	141	216	36.57
ATR_00065G01750	Amborella trichopoda	4e-38	142	227	37.89
PP00309G00200	Physcomitrella patens	5e-38	140	239	38.49
ATR_00019G03590	Amborella trichopoda	1e-37	141	237	34.18
OS04G51520	Oryza sativa	1e-37	141	256	35.55
PP00019G00220	Physcomitrella patens	2e-37	140	231	37.23
PP00213G00650	Physcomitrella patens	2e-37	140	230	36.96
OS02G17900	Oryza sativa	2e-37	140	229	37.55
PP00011G01530	Physcomitrella patens	2e-37	140	233	34.76
AT4G28850	Arabidopsis thaliana	2e-37	140	237	35.44
ATR_00026G01130	Amborella trichopoda	9e-37	135	161	45.34
AT4G25820	Arabidopsis thaliana	1e-35	135	222	36.49
ATR_00062G00060	Amborella trichopoda	1e-35	132	188	35.64
OS02G17880	Oryza sativa	7e-35	133	219	36.07
ATR_00109G01360	Amborella trichopoda	2e-34	130	190	38.95
OS06G22919	Oryza sativa	3e-34	132	246	33.33
PP00081G01240	Physcomitrella patens	4e-34	131	229	36.24
PP00089G00910	Physcomitrella patens	5e-33	128	252	33.73
PP00048G00500	Physcomitrella patens	3e-31	124	229	37.12
PP00141G00620	Physcomitrella patens	1e-30	122	226	34.96
PP00346G00070	Physcomitrella patens	1e-30	122	230	34.78
ATR_00026G01150	Amborella trichopoda	4e-30	117	125	45.60
OS04G51510	Oryza sativa	7e-27	110	227	32.60
AT3G48580	Arabidopsis thaliana	9e-26	108	222	30.63
PP00089G00960	Physcomitrella patens	2e-23	100	173	36.99
PP00353G00180	Physcomitrella patens	3e-23	100	136	44.12
ATR_00055G01550	Amborella trichopoda	2e-20	89.4	111	39.64
ATR_00019G03580	Amborella trichopoda	1e-18	85.1	94	43.62
ATR_00069G00950	Amborella trichopoda	1e-18	86.7	132	40.91
ATR_01729G00020	Amborella trichopoda	5e-18	80.9	69	52.17
PP00037G01500	Physcomitrella patens	2e-17	86.3	164	35.37
OS03G02610	Oryza sativa	2e-17	84.0	155	34.84
PP00024G01140	Physcomitrella patens	1e-16	84.0	164	33.54
PP00002G02710	Physcomitrella patens	2e-11	63.5	79	43.04
ATR_00004G02620	Amborella trichopoda	1e-10	61.2	68	47.06
YGR189C	Saccharomyces cerevisiae strain S288C	5e-10	63.9	163	27.61
YLR213C	Saccharomyces cerevisiae strain S288C	1e-08	59.3	175	28.00
ATR_00065G01730	Amborella trichopoda	3e-07	52.0	37	54.05
ATR_00062G00030	Amborella trichopoda	3e-06	49.3	103	27.18

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment