Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ATR_00035G00260	Amborella trichopoda	0.0	513	246	100.00
ATR_00035G00470	Amborella trichopoda	9e-125	369	245	75.92
ATR_00006G02240	Amborella trichopoda	7e-101	300	228	68.42
ATR_00035G00400	Amborella trichopoda	1e-54	187	218	44.95
ATR_04066G00010	Amborella trichopoda	8e-52	174	219	42.92
AT5G07860	Arabidopsis thaliana	2e-40	149	255	36.86
AT5G07870	Arabidopsis thaliana	2e-38	144	248	35.89
AT5G42830	Arabidopsis thaliana	5e-38	143	210	36.67
AT5G67150	Arabidopsis thaliana	2e-37	141	232	34.48
AT5G01210	Arabidopsis thaliana	1e-36	139	280	30.00
AT2G39980	Arabidopsis thaliana	2e-36	139	190	40.00
AT5G07850	Arabidopsis thaliana	2e-35	135	252	33.73
AT3G50270	Arabidopsis thaliana	1e-32	128	227	37.44
OS08G02020	Oryza sativa	3e-32	127	217	35.94
OS06G01350	Oryza sativa	8e-32	125	223	35.87
OS05G37660	Oryza sativa	2e-31	124	237	32.07
AT3G50280	Arabidopsis thaliana	6e-31	123	231	34.20
OS01G63480	Oryza sativa	6e-31	123	237	34.18
ATR_00029G03400	Amborella trichopoda	1e-30	123	189	35.45
OS11G13970	Oryza sativa	1e-30	122	255	33.33
OS08G01980	Oryza sativa	3e-29	118	243	32.10
AT5G67160	Arabidopsis thaliana	2e-28	115	227	32.16
OS08G02030	Oryza sativa	2e-28	115	223	33.18
OS04G30570	Oryza sativa	4e-28	115	181	37.02
AT3G50300	Arabidopsis thaliana	6e-28	114	194	35.57
OS08G44840	Oryza sativa	2e-27	112	215	33.49
ATR_00009G01680	Amborella trichopoda	3e-27	113	216	31.02
AT5G23940	Arabidopsis thaliana	6e-27	112	219	31.51
OS08G01960	Oryza sativa	1e-26	112	222	33.33
ATR_00019G02930	Amborella trichopoda	4e-26	106	143	39.86
OS08G01950	Oryza sativa	2e-25	108	215	33.95
AT3G50290	Arabidopsis thaliana	9e-25	103	162	39.51
AT5G38130	Arabidopsis thaliana	3e-24	104	219	31.51
OS07G04970	Oryza sativa	7e-24	103	220	35.45
ATR_04066G00020	Amborella trichopoda	5e-18	85.9	105	45.71
AT2G19070	Arabidopsis thaliana	4e-17	84.0	208	29.81
PP00022G00830	Physcomitrella patens	2e-16	81.6	166	30.72
PP00150G00620	Physcomitrella patens	7e-15	77.4	140	35.71
AT5G48930	Arabidopsis thaliana	3e-14	75.1	202	26.24
ATR_00016G01840	Amborella trichopoda	4e-14	74.7	161	32.30
PP00097G01170	Physcomitrella patens	5e-14	74.7	213	28.17
OS11G31090	Oryza sativa	3e-13	72.4	133	36.84
OS03G08720	Oryza sativa	4e-13	72.0	214	28.50
PP00016G01200	Physcomitrella patens	6e-13	71.6	147	29.25
ATR_00727G00010	Amborella trichopoda	6e-13	70.1	191	25.65
ATR_00025G03470	Amborella trichopoda	6e-13	71.6	215	27.91
PP00266G00190	Physcomitrella patens	6e-13	71.2	227	25.55
ATR_00137G00320	Amborella trichopoda	8e-13	71.2	197	26.90
PP00275G00350	Physcomitrella patens	1e-12	70.5	228	26.32
PP00064G00170	Physcomitrella patens	3e-12	69.3	226	25.22
OS10G23310	Oryza sativa	3e-12	69.3	200	26.50
OS09G25460	Oryza sativa	3e-12	69.3	163	27.61
OS03G47860	Oryza sativa	4e-12	69.3	227	27.31
AT5G41040	Arabidopsis thaliana	5e-12	68.6	172	29.65
PP00465G00160	Physcomitrella patens	1e-11	67.8	209	27.75
ATR_00058G01960	Amborella trichopoda	2e-11	67.0	200	26.00
ATR_00002G04060	Amborella trichopoda	3e-11	66.6	210	26.67
ATR_04066G00030	Amborella trichopoda	4e-11	61.2	62	45.16
ATR_00002G04080	Amborella trichopoda	5e-11	65.9	224	24.11
AT2G40230	Arabidopsis thaliana	5e-11	65.5	136	32.35
PP00015G01970	Physcomitrella patens	8e-11	65.1	208	23.56
OS04G30600	Oryza sativa	8e-11	62.4	69	43.48
ATR_00002G04110	Amborella trichopoda	9e-11	64.7	138	32.61
ATR_00002G04070	Amborella trichopoda	1e-10	64.7	210	26.19
ATR_00038G00230	Amborella trichopoda	1e-10	61.2	81	33.33
ATR_00047G00390	Amborella trichopoda	1e-10	64.3	160	28.75
ATR_00038G00220	Amborella trichopoda	1e-10	64.3	118	29.66
AT5G39050	Arabidopsis thaliana	1e-10	64.3	180	28.89
OS04G42250	Oryza sativa	3e-10	63.2	219	24.66
OS02G39850	Oryza sativa	7e-10	62.4	221	24.43
AT1G32910	Arabidopsis thaliana	2e-09	61.2	191	22.51
ATR_00002G04090	Amborella trichopoda	2e-09	60.5	111	33.33
ATR_00002G04100	Amborella trichopoda	2e-09	60.8	122	31.97
OS08G43040	Oryza sativa	4e-09	60.1	160	28.75
ATR_00058G01940	Amborella trichopoda	5e-09	59.7	170	27.06
OS09G37180	Oryza sativa	5e-09	59.7	194	29.90
PP00004G00910	Physcomitrella patens	6e-09	59.3	162	27.78
AT3G48720	Arabidopsis thaliana	7e-09	59.3	160	25.62
PP00054G01450	Physcomitrella patens	7e-09	59.3	180	26.67
OS09G37200	Oryza sativa	8e-09	59.3	169	31.95
OS10G23820	Oryza sativa	1e-08	58.5	192	26.56
ATR_00058G01950	Amborella trichopoda	1e-08	58.5	170	25.88
OS06G49660	Oryza sativa	2e-08	58.2	186	27.42
AT3G29680	Arabidopsis thaliana	4e-08	57.0	175	27.43
ATR_00038G00270	Amborella trichopoda	5e-08	56.6	86	30.23
AT1G28680	Arabidopsis thaliana	6e-08	56.6	159	25.16
OS04G56910	Oryza sativa	1e-07	55.8	192	27.08
ATR_00025G03280	Amborella trichopoda	2e-07	55.1	167	26.35
AT3G03480	Arabidopsis thaliana	2e-07	54.7	196	26.53
AT5G63560	Arabidopsis thaliana	5e-07	53.9	156	25.64
AT5G39080	Arabidopsis thaliana	6e-07	53.5	184	30.43
AT5G39090	Arabidopsis thaliana	7e-07	53.5	231	27.71
ATR_00045G00990	Amborella trichopoda	7e-07	53.5	195	27.69
ATR_00086G01160	Amborella trichopoda	8e-07	53.1	119	27.73
OS11G42480	Oryza sativa	1e-06	52.8	215	28.84
OS06G05284	Oryza sativa	2e-06	52.0	250	22.40
AT5G61160	Arabidopsis thaliana	2e-06	52.0	195	23.08
OS01G24790	Oryza sativa	2e-06	51.6	214	26.64
ATR_00024G03160	Amborella trichopoda	2e-06	51.2	151	28.48
OS06G06180	Oryza sativa	8e-06	50.1	138	26.09
OS03G45740	Oryza sativa	9e-06	50.1	170	24.12

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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