Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Interactive Phylogenetics Module

Gene Id: ATR_00029G03220

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ATR_00029G03220	Amborella trichopoda	0.0	1244	601	100.00
ATR_00029G03190	Amborella trichopoda	0.0	988	568	84.15
AT3G54140	Arabidopsis thaliana	0.0	811	567	67.72
AT5G01180	Arabidopsis thaliana	0.0	799	565	65.66
OS01G04950	Oryza sativa	0.0	781	558	67.38
PP00114G00050	Physcomitrella patens	0.0	725	592	59.80
AT2G02040	Arabidopsis thaliana	0.0	719	595	58.99
ATR_00024G00950	Amborella trichopoda	0.0	718	588	60.03
OS03G51050	Oryza sativa	0.0	718	586	59.56
OS07G01070	Oryza sativa	0.0	715	560	62.86
OS03G13240	Oryza sativa	0.0	668	566	56.89
AT1G62200	Arabidopsis thaliana	0.0	648	559	56.17
OS03G13250	Oryza sativa	0.0	625	558	53.58
ATR_00024G00980	Amborella trichopoda	0.0	617	586	56.48
ATR_00024G00990	Amborella trichopoda	0.0	610	583	54.89
OS01G67630	Oryza sativa	0.0	594	552	53.80
PP00173G00410	Physcomitrella patens	0.0	583	563	51.33
AT2G02020	Arabidopsis thaliana	0.0	578	583	50.09
PP00171G00030	Physcomitrella patens	0.0	558	537	50.84
PP00075G00110	Physcomitrella patens	0.0	552	563	48.49
PP00014G00620	Physcomitrella patens	0.0	540	566	46.82
OS03G13274	Oryza sativa	6e-178	524	564	46.28
OS10G02260	Oryza sativa	2e-175	517	576	45.66
PP00133G00360	Physcomitrella patens	1e-174	517	599	45.08
OS10G02100	Oryza sativa	5e-174	513	571	47.46
PP00298G00140	Physcomitrella patens	2e-172	511	569	44.82
OS10G02220	Oryza sativa	3e-170	503	559	43.83
OS10G02210	Oryza sativa	8e-170	503	537	46.37
PP00113G00080	Physcomitrella patens	9e-170	505	602	45.18
OS02G48570	Oryza sativa	2e-169	502	557	44.70
PP00246G00590	Physcomitrella patens	1e-167	498	572	45.10
PP00389G00030	Physcomitrella patens	2e-167	498	561	44.21
ATR_00120G00460	Amborella trichopoda	2e-166	495	541	45.29
ATR_00054G00270	Amborella trichopoda	1e-165	492	565	47.08
PP00116G00100	Physcomitrella patens	1e-165	494	567	46.21
OS10G02240	Oryza sativa	1e-164	489	563	46.18
ATR_00067G01870	Amborella trichopoda	1e-163	488	565	42.65
PP00434G00170	Physcomitrella patens	2e-163	488	559	42.58
ATR_00256G00010	Amborella trichopoda	3e-163	487	564	42.55
CNC64A_010G00890	Chlorella sp NC64A	3e-162	483	542	45.76
ATR_00149G00300	Amborella trichopoda	1e-161	483	562	44.13
HE0000G52310	Helicosporidium sp.	1e-161	484	540	45.19
ATR_00036G01320	Amborella trichopoda	1e-160	480	565	41.95
ATR_00067G01930	Amborella trichopoda	1e-160	479	567	42.50
OS10G22560	Oryza sativa	3e-160	478	546	44.69
PP00071G00970	Physcomitrella patens	5e-160	482	562	45.91
AP00G32420	Auxenochlorella protothecoides	1e-159	479	529	45.56
OS03G04570	Oryza sativa	2e-158	474	563	43.87
OS06G49250	Oryza sativa	3e-157	469	529	44.61
OS07G41250	Oryza sativa	6e-157	473	546	42.67
ATR_00186G00140	Amborella trichopoda	6e-157	470	577	45.06
AT4G21680	Arabidopsis thaliana	8e-157	470	566	42.93
OS10G33210	Oryza sativa	9e-157	470	566	42.58
CV00G86190	Coccomyxa subellipsoidea C-169	1e-156	470	562	45.91
ATR_00156G00390	Amborella trichopoda	1e-155	467	561	44.39
PP00400G00020	Physcomitrella patens	2e-155	465	534	43.82
ATR_00104G00420	Amborella trichopoda	5e-155	465	563	42.98
OS10G02080	Oryza sativa	6e-155	462	527	46.30
OS06G49220	Oryza sativa	2e-154	463	558	43.91
OS10G42870	Oryza sativa	4e-154	462	565	43.19
AT2G40460	Arabidopsis thaliana	9e-154	462	564	42.02
AT1G32450	Arabidopsis thaliana	2e-153	462	562	43.24
OS04G50940	Oryza sativa	2e-153	461	552	42.03
OS04G50950	Oryza sativa	5e-153	460	549	42.08
PP00302G00070	Physcomitrella patens	8e-151	457	574	42.16
AT1G68570	Arabidopsis thaliana	1e-150	454	538	45.17
AT2G26690	Arabidopsis thaliana	8e-150	451	566	43.64
HE0000G08520	Helicosporidium sp.	2e-149	452	519	45.47
AT5G19640	Arabidopsis thaliana	8e-149	450	582	40.72
OS02G47090	Oryza sativa	1e-148	448	555	44.68
PI00G42080	Picochlorum sp. SENEW3 (SE3)	2e-148	452	563	42.27
AT5G46040	Arabidopsis thaliana	2e-147	446	562	42.35
OS08G05910	Oryza sativa	4e-147	445	566	43.82
AT5G46050	Arabidopsis thaliana	6e-147	444	565	41.77
ATR_00086G00940	Amborella trichopoda	7e-147	444	554	43.50
OS02G46460	Oryza sativa	1e-146	444	590	41.86
OS10G33170	Oryza sativa	3e-146	443	564	41.13
AT3G54450	Arabidopsis thaliana	2e-145	439	548	40.51
PP00298G00190	Physcomitrella patens	9e-145	439	567	42.33
OS05G33960	Oryza sativa	7e-144	437	561	41.89
RCC4223.05g02060	Picochlorum_RCC4223	1e-143	440	581	42.69
AT3G53960	Arabidopsis thaliana	1e-142	434	563	40.67
AT5G13400	Arabidopsis thaliana	1e-141	432	563	41.74
OS10G40600	Oryza sativa	3e-141	430	562	42.53
OS06G15370	Oryza sativa	4e-141	430	568	41.20
OS03G48180	Oryza sativa	5e-141	429	562	40.39
ATR_00022G01870	Amborella trichopoda	6e-141	429	561	42.60
ATR_00002G04270	Amborella trichopoda	7e-141	429	571	38.18
PI00G49640	Picochlorum sp. SENEW3 (SE3)	7e-141	430	545	43.49
OS05G34010	Oryza sativa	1e-140	429	553	41.59
OS10G02340	Oryza sativa	1e-140	427	541	43.44
AT1G12110	Arabidopsis thaliana	3e-140	427	557	40.57
AT2G37900	Arabidopsis thaliana	2e-139	425	560	39.64
RCC4223.18g01160	Picochlorum_RCC4223	2e-139	426	543	43.09
ATR_00016G00080	Amborella trichopoda	2e-139	427	562	41.81
OS05G34030	Oryza sativa	3e-138	423	558	42.11
AP00G52100	Auxenochlorella protothecoides	1e-137	420	514	43.97
AC00G76010	Asterochloris sp. Cgr-DA1pho v2.0	6e-137	420	561	41.89
ATR_00165G00370	Amborella trichopoda	6e-136	416	561	41.89
AT1G22540	Arabidopsis thaliana	7e-136	415	564	42.20
AT1G72140	Arabidopsis thaliana	8e-136	414	565	38.76
AT1G59740	Arabidopsis thaliana	3e-133	409	556	39.57
OS03G60850	Oryza sativa	1e-132	407	556	38.67
AT1G69870	Arabidopsis thaliana	2e-132	408	552	38.59
ATR_00019G00590	Amborella trichopoda	7e-132	404	536	39.93
ATR_00169G00300	Amborella trichopoda	1e-131	403	537	40.60
OS01G37590	Oryza sativa	5e-131	403	553	42.50
AT3G21670	Arabidopsis thaliana	5e-131	403	566	40.64
AT1G72120	Arabidopsis thaliana	7e-131	402	568	41.55
CV00G87420	Coccomyxa subellipsoidea C-169	1e-130	403	553	41.41
PP00072G00360	Physcomitrella patens	4e-130	403	576	38.37
AP00G65500	Auxenochlorella protothecoides	2e-129	399	567	40.39
ATR_00002G04300	Amborella trichopoda	2e-128	396	558	37.46
AT1G72125	Arabidopsis thaliana	3e-128	395	557	40.57
OS01G65110	Oryza sativa	4e-128	394	570	37.89
OS01G65100	Oryza sativa	5e-128	394	570	39.82
VC00G30280	Volvox carteri	6e-128	398	572	40.21
OS10G42900	Oryza sativa	1e-126	391	540	40.19
OS06G21900	Oryza sativa	4e-126	392	581	38.90
AT1G72130	Arabidopsis thaliana	5e-126	389	541	39.00
OS03G01290	Oryza sativa	4e-125	388	558	39.43
OS06G49240	Oryza sativa	8e-125	382	426	42.72
AT1G22550	Arabidopsis thaliana	2e-124	385	580	38.10
AT1G33440	Arabidopsis thaliana	9e-124	385	559	38.28
AT1G22570	Arabidopsis thaliana	3e-123	382	583	41.34
ATR_00099G01020	Amborella trichopoda	6e-123	383	560	37.32
ATR_00078G00550	Amborella trichopoda	1e-122	382	570	39.47
PP00143G00670	Physcomitrella patens	1e-122	388	585	36.24
ATR_00088G00540	Amborella trichopoda	2e-122	378	465	44.95
OS01G54515	Oryza sativa	8e-122	377	519	40.85
AT1G69850	Arabidopsis thaliana	1e-121	379	587	36.97
OS12G44110	Oryza sativa	2e-120	375	549	36.43
OS12G44100	Oryza sativa	4e-118	370	546	35.90
AT1G27040	Arabidopsis thaliana	7e-118	369	556	37.23
OS05G35650	Oryza sativa	4e-117	367	561	40.11
OS01G01360	Oryza sativa	6e-117	367	553	41.05
ATR_00067G01530	Amborella trichopoda	2e-116	362	462	40.04
OS04G39030	Oryza sativa	1e-115	363	569	41.48
OS04G50930	Oryza sativa	2e-115	364	578	35.81
AT1G18880	Arabidopsis thaliana	8e-115	361	548	34.85
OS01G68510	Oryza sativa	3e-114	360	552	35.69
ATR_00036G01380	Amborella trichopoda	1e-113	355	422	42.89
OS01G65210	Oryza sativa	2e-112	359	556	35.61
OS05G35594	Oryza sativa	1e-111	351	546	36.63
AT1G27080	Arabidopsis thaliana	2e-111	352	549	36.61
AT5G62680	Arabidopsis thaliana	9e-111	352	594	35.02
AT5G62730	Arabidopsis thaliana	3e-110	349	576	35.76
OS06G38294	Oryza sativa	6e-106	338	578	36.51
ATR_00109G00940	Amborella trichopoda	2e-105	336	566	33.39
AT1G52190	Arabidopsis thaliana	1e-104	335	585	33.16
OS04G36040	Oryza sativa	1e-102	330	585	34.87
AT3G47960	Arabidopsis thaliana	2e-102	330	548	34.12
OS05G27010	Oryza sativa	8e-102	325	462	39.61
ATR_00045G01590	Amborella trichopoda	1e-101	324	463	39.09
AT3G16180	Arabidopsis thaliana	4e-99	320	582	33.33
ATR_00055G01460	Amborella trichopoda	7e-99	317	525	36.00
AT5G14940	Arabidopsis thaliana	2e-98	317	562	32.74
ATR_00089G01050	Amborella trichopoda	4e-98	317	562	32.74
ATR_00118G00290	Amborella trichopoda	1e-97	311	397	38.29
OS04G56560	Oryza sativa	2e-97	317	613	33.28
OS11G12740	Oryza sativa	4e-95	311	583	34.82
OS11G18044	Oryza sativa	5e-95	309	567	33.51
AT3G45650	Arabidopsis thaliana	4e-93	303	563	31.79
AT5G28470	Arabidopsis thaliana	1e-92	303	555	32.07
OS01G67640	Oryza sativa	1e-92	303	269	55.39
AT1G69860	Arabidopsis thaliana	1e-92	302	541	34.38
OS11G17970	Oryza sativa	5e-91	300	576	31.94
OS01G55610	Oryza sativa	1e-90	298	554	34.48
AT3G01350	Arabidopsis thaliana	2e-90	297	576	30.73
AT3G25260	Arabidopsis thaliana	4e-90	295	548	32.85
OS01G65150	Oryza sativa	1e-89	294	555	34.05
AT3G45660	Arabidopsis thaliana	7e-89	292	564	31.38
OS04G41400	Oryza sativa	1e-88	292	567	32.98
AT3G45720	Arabidopsis thaliana	2e-88	291	554	31.95
OS06G13210	Oryza sativa	8e-88	289	553	33.45
OS11G23890	Oryza sativa	1e-87	292	576	31.94
OS01G55600	Oryza sativa	3e-87	288	553	34.54
OS01G65169	Oryza sativa	4e-86	285	586	34.30
OS04G41450	Oryza sativa	6e-86	285	558	32.97
AT3G45680	Arabidopsis thaliana	2e-85	283	576	30.38
OS12G12934	Oryza sativa	3e-83	278	568	33.27
AT3G45700	Arabidopsis thaliana	3e-81	272	551	29.76
OS05G27304	Oryza sativa	3e-81	273	562	32.56
AT3G45710	Arabidopsis thaliana	8e-81	271	549	29.51
OS06G13200	Oryza sativa	4e-79	266	554	32.13
AT3G25280	Arabidopsis thaliana	3e-78	263	545	31.56
ATR_00118G00320	Amborella trichopoda	1e-76	253	261	52.49
AT3G45690	Arabidopsis thaliana	8e-74	251	547	29.25
HE0000G42610	Helicosporidium sp.	1e-69	231	223	51.12
OS11G18110	Oryza sativa	3e-69	240	463	31.53
CNC64A_007G03700	Chlorella sp NC64A	1e-68	236	215	52.56
CR04G03930	Chlamydomonas reinhardtii	7e-67	238	253	48.62
OS01G65140	Oryza sativa	3e-66	226	252	45.24
ATR_00118G00300	Amborella trichopoda	8e-66	222	258	44.57
ATR_00112G00370	Amborella trichopoda	9e-66	225	348	35.92
ATR_00024G00970	Amborella trichopoda	1e-65	220	270	42.59
ATR_00070G00600	Amborella trichopoda	2e-64	219	272	42.65
OS08G41590	Oryza sativa	3e-63	219	427	31.38
phs97310	Phytophtora sojae	6e-62	221	565	29.20
ATR_00162G00100	Amborella trichopoda	3e-61	211	275	42.91
PP00147G00390	Physcomitrella patens	1e-58	204	214	45.79
Naga_100030g44	Nannochloropsis gaditana	3e-57	209	444	33.11
OS05G34000	Oryza sativa	4e-57	208	306	38.24
ENSG00000139370	Homo sapiens	2e-56	206	558	27.96
phs319720	Phytophtora sojae	6e-56	205	580	28.10
ATR_00002G04290	Amborella trichopoda	1e-54	195	326	34.97
OS04G41410	Oryza sativa	9e-54	196	460	30.22
OS01G65200	Oryza sativa	4e-53	191	372	37.37
OS04G59480	Oryza sativa	2e-50	187	241	39.83
ENSMUSG00000029416	Mus musculus	5e-50	187	576	28.30
PP00069G00140	Physcomitrella patens	9e-50	186	527	26.38
ES0453G00050	Ectocarpus siliculosus	3e-49	184	478	31.80
phs89090	Phytophtora sojae	3e-49	186	574	26.13
DDB_G0272550	Dictyostelium discoideum	3e-48	182	469	30.06
OS10G05780	Oryza sativa	3e-48	182	249	40.56
OS01G65190	Oryza sativa	1e-47	181	229	40.61
FC006G04490	Fragilariopsis cylindrus	4e-45	173	530	27.74
ATR_00023G02330	Amborella trichopoda	2e-44	165	241	37.76
phs42450	Phytophtora sojae	5e-44	170	561	26.74
AT2G38100	Arabidopsis thaliana	5e-44	169	517	27.08
ATR_00070G00590	Amborella trichopoda	2e-43	160	237	41.77
OS01G65120	Oryza sativa	3e-43	166	228	39.04
ENSMUSG00000025557	Mus musculus	5e-43	168	409	26.41
ENSMUSG00000022899	Mus musculus	2e-42	166	405	28.15
HE0000G35580	Helicosporidium sp.	9e-42	157	255	38.82
PP00004G00090	Physcomitrella patens	9e-42	157	262	35.88
PP00009G01060	Physcomitrella patens	6e-41	160	487	26.08
FBgn0265575	Drosophila melanogaster	8e-40	159	377	28.91
ATR_00020G00660	Amborella trichopoda	4e-39	148	244	34.84
PP00065G01500	Physcomitrella patens	6e-39	153	494	27.53
FBgn0028491	Drosophila melanogaster	1e-38	155	405	27.90
ENSG00000163406	Homo sapiens	3e-38	154	405	27.90
ATR_00054G00250	Amborella trichopoda	1e-37	142	201	38.31
phs07850	Phytophtora sojae	6e-37	148	595	25.38
ATR_00023G02340	Amborella trichopoda	1e-36	142	282	30.14
ATR_00024G00960	Amborella trichopoda	9e-36	135	118	55.08
ATR_00162G00110	Amborella trichopoda	1e-35	136	148	47.30
WBGene00003877	Caenorhabditis elegans	3e-35	145	408	25.49
AT5G11570	Arabidopsis thaliana	7e-35	141	263	32.70
WBGene00003878	Caenorhabditis elegans	2e-34	142	413	27.60
DDB_G0272468	Dictyostelium discoideum	7e-34	141	471	27.39
AA0005G00440	Aureococcus anophagefferens	8e-34	136	470	27.02
PTI_12G03880	Phaeodactylum tricornutum	2e-33	139	630	25.24
SPBC13A2.04c	Schizosaccharomyces pombe	2e-30	130	523	26.20
ATR_00118G00280	Amborella trichopoda	6e-30	121	150	42.67
OS06G49230	Oryza sativa	8e-30	119	107	49.53
DDB_G0267874	Dictyostelium discoideum	6e-29	125	496	23.19
phs255230	Phytophtora sojae	9e-29	125	593	23.95
WBGene00003876	Caenorhabditis elegans	1e-28	125	407	26.29
OS05G27050	Oryza sativa	4e-28	114	113	44.25
YKR093W	Saccharomyces cerevisiae strain S288C	6e-27	119	493	24.75
phs07890	Phytophtora sojae	9e-27	112	193	36.27
ATR_00096G00160	Amborella trichopoda	1e-26	112	82	60.98
OS03G17770	Oryza sativa	2e-25	112	129	45.74
ENSG00000188991	Homo sapiens	3e-25	114	562	22.42
phs42430	Phytophtora sojae	1e-24	111	444	26.13
TP04G00530	Thalassiosira pseudonana	8e-24	110	548	25.55
ATR_00109G00960	Amborella trichopoda	1e-23	102	135	37.78
FC011G01070	Fragilariopsis cylindrus	2e-22	105	547	24.68
FC056G00710	Fragilariopsis cylindrus	3e-21	102	471	22.72
AA0009G01620	Aureococcus anophagefferens	7e-21	99.8	224	30.80
OS07G21960	Oryza sativa	2e-20	96.7	273	29.30
ATR_00067G01540	Amborella trichopoda	3e-20	93.2	194	30.41
OS04G34640	Oryza sativa	3e-19	92.4	97	50.52
OS12G13790	Oryza sativa	4e-19	94.7	174	35.63
ATR_00020G00670	Amborella trichopoda	8e-19	89.4	115	44.35
phs31460	Phytophtora sojae	2e-18	92.8	588	22.11
FC015G01430	Fragilariopsis cylindrus	1e-17	90.5	509	25.15
gsu136190	Galdieria sulphuraria	2e-17	88.6	141	40.43
emh586030	Emiliania huxleyi	3e-17	88.6	496	25.00
TP08G01040	Thalassiosira pseudonana	6e-17	88.2	460	24.13
ATR_00088G00530	Amborella trichopoda	4e-15	77.0	83	40.96
FBgn0037730	Drosophila melanogaster	2e-14	80.1	548	21.72
phs239650	Phytophtora sojae	4e-14	77.0	253	28.46
ATR_00048G01070	Amborella trichopoda	4e-14	73.9	72	45.83
FC009G05560	Fragilariopsis cylindrus	5e-14	79.0	167	33.53
ATR_00162G00120	Amborella trichopoda	1e-13	73.2	103	37.86
OS02G52060	Oryza sativa	1e-13	75.5	121	35.54
RCC4223.111g00230	Picochlorum_RCC4223	3e-13	76.6	386	22.28
ATR_00089G01060	Amborella trichopoda	3e-13	71.6	94	40.43
OS08G41600	Oryza sativa	5e-13	71.6	83	45.78
emh670440	Emiliania huxleyi	9e-13	73.2	166	33.13
emh44980	Emiliania huxleyi	1e-12	73.9	392	25.77
PTI_12G02910	Phaeodactylum tricornutum	2e-10	67.8	215	29.77
OS08G31960	Oryza sativa	3e-10	65.1	62	58.06
OT_11G01550	Ostreococcus tauri	5e-10	66.2	467	18.84
ES0051G00510	Ectocarpus siliculosus	9e-10	62.4	70	40.00
phs239630	Phytophtora sojae	2e-07	57.4	237	27.00
OS12G15600	Oryza sativa	5e-07	55.8	131	31.30
OS02G31980	Oryza sativa	8e-07	52.8	68	38.24
OS01G65130	Oryza sativa	1e-06	52.4	101	34.65
BPRRCC1105_13G01850	Bathycoccus prasinos	1e-06	55.5	195	26.15

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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