Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ATR_00008G00980	Amborella trichopoda	5e-62	190	100	100.00
ATR_00008G00960	Amborella trichopoda	7e-51	171	98	89.80
OS03G08900	Oryza sativa	2e-34	127	87	72.41
AT5G65380	Arabidopsis thaliana	3e-31	119	87	64.37
OS08G37432	Oryza sativa	2e-30	116	86	62.79
AT5G10420	Arabidopsis thaliana	1e-29	114	86	61.63
OS09G29284	Oryza sativa	8e-29	112	86	61.63
ATR_00009G01360	Amborella trichopoda	3e-26	101	86	54.65
OS08G44870	Oryza sativa	2e-25	102	83	59.04
ATR_00059G01620	Amborella trichopoda	4e-25	102	87	54.02
AT5G44050	Arabidopsis thaliana	1e-24	100	72	61.11
AT1G47530	Arabidopsis thaliana	2e-24	100	85	57.65
ATR_00060G00210	Amborella trichopoda	6e-24	95.9	84	52.38
OS12G03260	Oryza sativa	9e-24	98.6	82	56.10
ATR_00059G01610	Amborella trichopoda	1e-23	97.4	84	50.00
OS11G03500	Oryza sativa	2e-22	95.1	82	53.66
ATR_00059G01630	Amborella trichopoda	3e-22	94.4	86	51.16
ATR_00060G00260	Amborella trichopoda	4e-22	94.0	84	51.19
OS03G37640	Oryza sativa	5e-22	93.6	84	54.76
ATR_00009G01350	Amborella trichopoda	8e-22	92.4	86	52.33
OS12G03230	Oryza sativa	6e-21	88.6	69	60.87
OS03G42830	Oryza sativa	2e-20	89.4	87	45.98
AT4G25640	Arabidopsis thaliana	2e-20	89.4	87	58.62
AT4G00350	Arabidopsis thaliana	3e-20	89.0	84	53.57
OS11G03240	Oryza sativa	4e-20	88.6	69	59.42
OS03G37490	Oryza sativa	5e-20	88.2	71	57.75
AT1G11670	Arabidopsis thaliana	6e-20	88.2	84	47.62
OS03G37411	Oryza sativa	8e-20	87.8	83	50.60
OS03G37470	Oryza sativa	8e-20	85.9	73	56.16
AT1G23300	Arabidopsis thaliana	1e-19	87.0	84	47.62
OS12G42130	Oryza sativa	1e-19	87.0	83	50.60
AT1G33100	Arabidopsis thaliana	2e-19	86.3	76	52.63
OS07G33310	Oryza sativa	2e-19	86.3	80	56.25
AT1G33090	Arabidopsis thaliana	3e-19	86.3	76	53.95
ATR_00062G01640	Amborella trichopoda	3e-19	85.9	72	55.56
AT1G61890	Arabidopsis thaliana	4e-19	85.5	70	52.86
AT1G12950	Arabidopsis thaliana	4e-19	85.9	80	47.50
ATR_00049G01900	Amborella trichopoda	4e-19	81.6	71	54.93
OS10G11860	Oryza sativa	7e-19	84.7	88	43.18
ATR_00049G01940	Amborella trichopoda	8e-19	84.0	78	48.72
AT1G33110	Arabidopsis thaliana	2e-18	84.0	76	50.00
AT3G59030	Arabidopsis thaliana	2e-18	84.0	86	50.00
ATR_00049G01960	Amborella trichopoda	3e-18	80.5	86	43.02
ATR_00049G01890	Amborella trichopoda	3e-18	83.2	78	50.00
ATR_00059G01570	Amborella trichopoda	7e-18	81.6	71	47.89
AT4G21903	Arabidopsis thaliana	8e-18	82.0	82	46.34
AT1G33080	Arabidopsis thaliana	1e-17	81.6	78	47.44
AT4G21910	Arabidopsis thaliana	1e-17	81.6	80	46.25
AT3G03620	Arabidopsis thaliana	2e-17	81.3	87	47.13
OS08G43654	Oryza sativa	2e-17	80.9	86	43.02
OS01G56050	Oryza sativa	3e-17	80.5	84	45.24
AT3G21690	Arabidopsis thaliana	3e-17	80.1	70	52.86
AT3G26590	Arabidopsis thaliana	4e-17	80.1	85	41.18
ATR_00092G00450	Amborella trichopoda	5e-17	79.7	92	40.22
OS02G57580	Oryza sativa	9e-17	76.3	101	39.60
AT5G38030	Arabidopsis thaliana	1e-16	78.6	85	42.35
ATR_00049G01930	Amborella trichopoda	3e-16	73.6	88	43.18
AT5G17700	Arabidopsis thaliana	9e-15	73.2	83	43.37
ATR_00021G02020	Amborella trichopoda	4e-13	68.6	78	42.31
AT1G71140	Arabidopsis thaliana	3e-11	63.2	81	38.27
AT1G15170	Arabidopsis thaliana	6e-11	62.4	76	42.11
AT5G52450	Arabidopsis thaliana	9e-11	61.6	83	40.96
AT1G66780	Arabidopsis thaliana	2e-10	60.8	77	40.26
AT2G34360	Arabidopsis thaliana	2e-10	60.5	66	51.52
AT3G23550	Arabidopsis thaliana	2e-10	60.5	70	44.29
AT1G15150	Arabidopsis thaliana	3e-10	60.5	76	43.42
AT1G15160	Arabidopsis thaliana	6e-10	59.3	73	43.84
AT1G15180	Arabidopsis thaliana	8e-10	58.9	76	39.47
ATR_00006G00440	Amborella trichopoda	9e-10	58.9	82	32.93
PP00068G00630	Physcomitrella patens	3e-09	57.4	72	34.72
AT1G64820	Arabidopsis thaliana	3e-09	57.4	77	36.36
OS01G31980	Oryza sativa	8e-09	56.2	70	32.86
PP00145G00670	Physcomitrella patens	1e-08	55.8	81	32.10
AT3G23560	Arabidopsis thaliana	1e-08	55.5	70	40.00
AT2G04090	Arabidopsis thaliana	2e-08	55.1	68	39.71
OS01G49120	Oryza sativa	3e-08	54.3	70	32.86
ATR_00006G00460	Amborella trichopoda	4e-08	54.3	70	31.43
OS05G48040	Oryza sativa	4e-08	54.3	49	44.90
AT2G04100	Arabidopsis thaliana	6e-08	53.5	68	38.24
ATR_00016G01560	Amborella trichopoda	7e-08	53.5	70	31.43
PP00028G00010	Physcomitrella patens	8e-08	53.1	70	38.57
AT2G04066	Arabidopsis thaliana	1e-07	50.4	78	34.62
OS04G30490	Oryza sativa	1e-07	52.8	70	32.86
ATR_00032G02500	Amborella trichopoda	1e-07	52.4	73	35.62
AT2G04040	Arabidopsis thaliana	3e-07	51.6	85	34.12
AT2G04070	Arabidopsis thaliana	4e-07	51.2	84	33.33
OS07G01750	Oryza sativa	4e-07	51.2	73	39.73
PP00183G00300	Physcomitrella patens	8e-07	50.1	69	36.23
OS06G29994	Oryza sativa	9e-07	50.1	61	40.98
AT2G04080	Arabidopsis thaliana	1e-06	49.7	78	34.62
AT2G04050	Arabidopsis thaliana	1e-06	49.7	69	39.13
OS10G11354	Oryza sativa	1e-06	49.3	83	32.53
OS06G29844	Oryza sativa	2e-06	48.9	59	35.59
AT1G66760	Arabidopsis thaliana	3e-06	48.5	52	42.31
ATR_00006G00500	Amborella trichopoda	4e-06	48.1	84	27.38
OS06G29950	Oryza sativa	7e-06	47.4	82	30.49
PP00048G00160	Physcomitrella patens	1e-05	47.0	69	33.33

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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