Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT5G63800	Arabidopsis thaliana	0.0	1489	719	100.00
AT1G77410	Arabidopsis thaliana	0.0	867	705	58.87
ATR_00054G00480	Amborella trichopoda	0.0	787	695	56.40
ATR_00138G00250	Amborella trichopoda	0.0	785	713	54.14
OS05G35360	Oryza sativa	0.0	741	709	53.17
AT2G16730	Arabidopsis thaliana	0.0	706	673	50.07
AT4G35010	Arabidopsis thaliana	0.0	702	675	50.67
AT4G36360	Arabidopsis thaliana	0.0	692	744	48.66
OS08G43570	Oryza sativa	0.0	692	684	48.68
ATR_00002G03330	Amborella trichopoda	0.0	689	726	49.59
OS03G06940	Oryza sativa	0.0	679	717	49.23
ATR_00054G00420	Amborella trichopoda	0.0	672	746	47.05
AT2G28470	Arabidopsis thaliana	0.0	668	720	49.03
AT3G13750	Arabidopsis thaliana	0.0	664	710	48.87
ATR_00175G00070	Amborella trichopoda	0.0	665	714	47.06
AT3G52840	Arabidopsis thaliana	0.0	657	701	48.93
OS01G65460	Oryza sativa	0.0	661	705	47.66
AT4G26140	Arabidopsis thaliana	0.0	653	700	48.00
AT5G56870	Arabidopsis thaliana	0.0	651	721	47.99
OS03G15020	Oryza sativa	0.0	657	722	47.09
OS09G36810	Oryza sativa	0.0	653	682	46.48
OS01G39830	Oryza sativa	0.0	649	704	48.01
AT1G45130	Arabidopsis thaliana	0.0	640	738	46.48
ATR_00032G00700	Amborella trichopoda	0.0	640	707	45.69
AT5G63810	Arabidopsis thaliana	0.0	636	732	45.77
OS02G12730	Oryza sativa	0.0	629	707	47.81
PP00010G00770	Physcomitrella patens	0.0	636	731	47.06
OS06G37560	Oryza sativa	0.0	629	700	47.14
AT4G38590	Arabidopsis thaliana	0.0	622	722	44.88
AT2G32810	Arabidopsis thaliana	0.0	613	755	44.24
ATR_00007G03940	Amborella trichopoda	0.0	610	721	44.80
PP00024G00380	Physcomitrella patens	0.0	590	711	45.15
OS12G24170	Oryza sativa	0.0	587	744	44.09
OS01G34920	Oryza sativa	0.0	580	717	43.65
PP00189G00350	Physcomitrella patens	0.0	580	721	43.41
OS10G18400	Oryza sativa	0.0	571	719	42.98
AT5G20710	Arabidopsis thaliana	0.0	560	752	41.36
OS10G19960	Oryza sativa	0.0	559	730	42.74
PP00189G00400	Physcomitrella patens	0.0	557	701	43.94
ATR_00136G00600	Amborella trichopoda	0.0	549	645	46.82
OS06G42310	Oryza sativa	4e-178	536	735	41.36
AT1G31740	Arabidopsis thaliana	7e-176	530	721	41.89
ATR_00117G00160	Amborella trichopoda	3e-174	521	666	43.09
DDB_G0285637	Dictyostelium discoideum	3e-118	379	738	34.01
gsu137250	Galdieria sulphuraria	5e-85	290	769	28.48
gsu50160	Galdieria sulphuraria	5e-84	294	471	33.97
gsu11780	Galdieria sulphuraria	1e-76	265	509	31.63
CM16G00790	Cyanidioschyzon merolae	2e-71	253	756	28.17
ATR_00012G01310	Amborella trichopoda	4e-71	251	199	54.77
ccr06460	Chondrus crispus	3e-67	236	523	29.45
phs380650	Phytophtora sojae	7e-55	208	284	38.03
PTI_07G03990	Phaeodactylum tricornutum	2e-52	201	794	25.94
FC009G01330	Fragilariopsis cylindrus	4e-51	195	791	26.80
AA0019G00640	Aureococcus anophagefferens	4e-38	157	386	30.31
ENSG00000166105	Homo sapiens	3e-35	146	329	32.22
ENSG00000149328	Homo sapiens	5e-35	145	336	30.95
ENSMUSG00000031966	Mus musculus	3e-32	136	315	32.70
ENSMUSG00000045594	Mus musculus	3e-31	134	334	31.74
CV00G05160	Coccomyxa subellipsoidea C-169	1e-30	131	325	31.38
AT1G72990	Arabidopsis thaliana	2e-30	131	342	31.87
emh679070	Emiliania huxleyi	2e-30	132	351	28.49
FBgn0001089	Drosophila melanogaster	5e-30	130	362	27.35
PP00149G00960	Physcomitrella patens	9e-30	129	372	28.76
AP00G08760	Auxenochlorella protothecoides	1e-29	129	351	30.48
ENSG00000170266	Homo sapiens	2e-29	128	328	31.10
ENSMUSG00000026200	Mus musculus	1e-28	125	324	30.86
AT2G04060	Arabidopsis thaliana	3e-28	122	365	29.32
HE0000G11640	Helicosporidium sp.	3e-28	125	349	29.80
ATR_00052G01140	Amborella trichopoda	5e-28	124	329	31.00
AC00G74030	Asterochloris sp. Cgr-DA1pho v2.0	1e-27	122	315	30.48
OS05G46200	Oryza sativa	2e-27	122	344	29.65
FBgn0260746	Drosophila melanogaster	2e-27	122	342	29.53
DDB_G0290217	Dictyostelium discoideum	4e-27	121	380	26.32
emh95410	Emiliania huxleyi	4e-26	118	177	35.03
PP00052G01170	Physcomitrella patens	6e-26	117	357	29.41
WBGene00011832	Caenorhabditis elegans	3e-25	115	323	27.86
AA0028G00760	Aureococcus anophagefferens	3e-25	115	313	27.80
CV00G04570	Coccomyxa subellipsoidea C-169	4e-25	115	308	29.22
CNC64A_026G00130	Chlorella sp NC64A	6e-25	114	336	28.57
gsu88290	Galdieria sulphuraria	1e-24	114	182	36.26
AA0006G02790	Aureococcus anophagefferens	3e-24	105	106	45.28
ENSMUSG00000079644	Mus musculus	1e-23	110	285	28.07
gsu130780	Galdieria sulphuraria	1e-23	110	166	36.14
WBGene00019225	Caenorhabditis elegans	3e-23	108	368	29.35
CV00G04560	Coccomyxa subellipsoidea C-169	2e-22	106	228	31.58
gsu88310	Galdieria sulphuraria	2e-21	103	159	36.48
CV00G47300	Coccomyxa subellipsoidea C-169	4e-21	102	324	27.16
ATR_00117G00150	Amborella trichopoda	7e-19	91.7	99	49.49
CV00G04120	Coccomyxa subellipsoidea C-169	8e-19	91.3	109	39.45
CV00G15560	Coccomyxa subellipsoidea C-169	6e-18	92.0	260	30.38
ATR_00054G00450	Amborella trichopoda	8e-15	76.3	88	46.59
gsu69750	Galdieria sulphuraria	2e-13	78.2	172	27.91
ccr87600	Chondrus crispus	3e-11	71.2	176	28.98
emh111480	Emiliania huxleyi	2e-09	64.7	303	25.41
OS05G35370	Oryza sativa	1e-07	55.8	45	57.78
PP00189G00390	Physcomitrella patens	5e-06	50.8	31	61.29
emh379590	Emiliania huxleyi	1e-05	49.7	87	33.33

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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