Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT5G57560	Arabidopsis thaliana	0.0	592	285	100.00
AT4G25810	Arabidopsis thaliana	1e-177	499	282	83.69
AT4G30270	Arabidopsis thaliana	2e-147	421	275	73.82
AT5G57550	Arabidopsis thaliana	4e-145	416	284	66.90
AT5G48070	Arabidopsis thaliana	2e-140	404	280	66.43
OS06G48160	Oryza sativa	1e-135	392	290	62.07
OS06G48200	Oryza sativa	1e-132	385	278	64.39
AT4G30280	Arabidopsis thaliana	3e-132	383	281	66.19
AT4G30290	Arabidopsis thaliana	4e-132	383	281	67.26
AT2G18800	Arabidopsis thaliana	1e-131	383	293	63.14
ATR_00062G00050	Amborella trichopoda	3e-131	381	270	67.78
ATR_00019G03570	Amborella trichopoda	2e-130	379	281	64.41
ATR_00062G00020	Amborella trichopoda	7e-130	377	282	63.83
AT1G65310	Arabidopsis thaliana	3e-129	376	263	69.58
AT3G23730	Arabidopsis thaliana	3e-127	371	279	60.93
OS06G48180	Oryza sativa	4e-127	370	273	62.27
AT4G14130	Arabidopsis thaliana	1e-124	364	279	61.29
ATR_00019G03590	Amborella trichopoda	1e-121	358	296	57.09
AT4G25820	Arabidopsis thaliana	3e-118	348	275	60.73
AT5G57540	Arabidopsis thaliana	2e-117	346	262	61.83
AT5G57530	Arabidopsis thaliana	2e-117	346	263	61.22
ATR_00065G01750	Amborella trichopoda	5e-110	327	285	56.84
ATR_00065G01770	Amborella trichopoda	3e-107	320	283	56.18
OS04G51460	Oryza sativa	1e-103	310	280	53.21
OS06G48170	Oryza sativa	5e-100	302	262	50.76
OS04G51520	Oryza sativa	2e-98	299	276	50.00
ATR_00026G01160	Amborella trichopoda	7e-96	291	291	48.11
OS08G14210	Oryza sativa	2e-95	292	284	48.59
ATR_00016G02940	Amborella trichopoda	3e-95	290	265	52.45
OS08G14200	Oryza sativa	3e-94	287	276	50.36
AT5G13870	Arabidopsis thaliana	7e-93	283	283	48.76
OS11G33270	Oryza sativa	1e-92	283	267	50.94
AT5G65730	Arabidopsis thaliana	7e-92	281	276	49.28
ATR_00019G03550	Amborella trichopoda	2e-91	280	282	48.23
PP00168G00050	Physcomitrella patens	2e-91	281	265	50.19
AT4G28850	Arabidopsis thaliana	5e-90	276	282	47.16
OS08G13920	Oryza sativa	1e-89	275	258	53.10
AT2G06850	Arabidopsis thaliana	4e-88	271	288	48.26
AT4G37800	Arabidopsis thaliana	4e-88	271	282	48.58
ATR_00062G00060	Amborella trichopoda	6e-87	265	195	65.13
AT1G11545	Arabidopsis thaliana	6e-87	268	293	46.42
OS04G51450	Oryza sativa	1e-86	269	260	49.62
AT4G03210	Arabidopsis thaliana	5e-86	266	249	51.81
OS08G13980	Oryza sativa	1e-84	263	270	48.89
ATR_00004G02430	Amborella trichopoda	1e-83	259	289	43.60
PP00004G00240	Physcomitrella patens	4e-83	259	249	50.20
PP00168G00160	Physcomitrella patens	4e-83	258	250	50.00
OS07G34580	Oryza sativa	8e-83	258	267	49.44
OS02G17880	Oryza sativa	2e-82	257	265	50.19
ATR_00453G00010	Amborella trichopoda	3e-82	257	277	46.57
PP00004G00260	Physcomitrella patens	3e-82	256	250	49.60
PP00309G00230	Physcomitrella patens	1e-81	255	282	45.39
PP00291G00470	Physcomitrella patens	8e-81	253	247	48.18
OS02G17900	Oryza sativa	9e-81	252	265	49.43
PP00309G00220	Physcomitrella patens	2e-80	252	250	49.20
ATR_00026G01070	Amborella trichopoda	3e-80	251	272	45.96
PP00193G00050	Physcomitrella patens	6e-80	252	248	47.58
AT2G14620	Arabidopsis thaliana	1e-78	247	266	43.23
OS06G22919	Oryza sativa	8e-78	245	285	44.91
PP00026G00650	Physcomitrella patens	9e-78	245	249	49.00
PP00618G00010	Physcomitrella patens	1e-77	248	247	46.96
PP00309G00140	Physcomitrella patens	1e-77	245	278	44.60
PP00272G00150	Physcomitrella patens	3e-77	243	241	47.72
AT4G13090	Arabidopsis thaliana	4e-75	238	290	44.83
ATR_00026G01110	Amborella trichopoda	6e-74	232	219	50.68
PP00195G00150	Physcomitrella patens	2e-73	234	280	42.86
AT4G13080	Arabidopsis thaliana	5e-70	224	259	45.17
ATR_00026G01130	Amborella trichopoda	5e-70	221	164	60.98
ATR_00109G01360	Amborella trichopoda	4e-68	217	201	51.24
AT3G25050	Arabidopsis thaliana	3e-67	218	262	43.13
OS04G51510	Oryza sativa	5e-67	216	277	42.60
PP00410G00130	Physcomitrella patens	3e-63	207	286	39.16
PP00213G00650	Physcomitrella patens	3e-63	207	246	43.09
ATR_00019G03580	Amborella trichopoda	8e-63	201	143	65.03
PP00122G00290	Physcomitrella patens	5e-62	204	245	43.27
PP00309G00200	Physcomitrella patens	2e-60	198	229	44.98
AT2G36870	Arabidopsis thaliana	2e-59	197	271	41.70
OS06G13040	Oryza sativa	3e-58	194	265	42.64
PP00156G00440	Physcomitrella patens	7e-58	193	244	40.16
PP00156G00420	Physcomitrella patens	7e-58	193	244	40.16
OS07G29750	Oryza sativa	2e-57	192	268	41.04
AT3G44990	Arabidopsis thaliana	6e-57	191	271	39.85
OS03G01800	Oryza sativa	4e-56	189	271	39.11
ATR_00082G00420	Amborella trichopoda	5e-55	186	252	42.46
PP00486G00100	Physcomitrella patens	8e-55	185	245	41.22
PP00486G00080	Physcomitrella patens	8e-55	185	245	41.22
OS10G39840	Oryza sativa	9e-54	183	262	38.55
OS02G57770	Oryza sativa	1e-53	183	273	38.83
ATR_00013G00910	Amborella trichopoda	1e-53	180	227	40.97
AT1G10550	Arabidopsis thaliana	6e-53	181	260	36.15
ATR_00026G01150	Amborella trichopoda	5e-52	174	162	51.23
AT1G32170	Arabidopsis thaliana	6e-52	179	289	34.60
PP00019G00220	Physcomitrella patens	1e-51	177	254	38.19
PP00081G01240	Physcomitrella patens	1e-51	177	247	40.49
ATR_00024G00080	Amborella trichopoda	2e-51	178	253	38.34
PP00005G00910	Physcomitrella patens	2e-51	181	258	36.43
PP00074G00080	Physcomitrella patens	3e-50	177	255	36.86
OS10G02770	Oryza sativa	1e-49	173	261	35.63
PP00011G01530	Physcomitrella patens	5e-49	171	275	35.64
AT1G14720	Arabidopsis thaliana	8e-49	171	261	36.78
OS03G13570	Oryza sativa	1e-48	171	275	35.27
PP00141G00620	Physcomitrella patens	1e-48	169	277	37.91
OS09G23220	Oryza sativa	5e-48	169	257	36.58
PP00089G00910	Physcomitrella patens	2e-47	166	253	39.13
AT2G01850	Arabidopsis thaliana	1e-46	165	268	34.70
OS03G63760	Oryza sativa	1e-43	158	298	31.54
PP00048G00500	Physcomitrella patens	1e-43	156	308	31.17
OS02G03550	Oryza sativa	6e-43	155	238	35.71
AT4G18990	Arabidopsis thaliana	2e-41	152	282	33.33
ATR_00048G00580	Amborella trichopoda	1e-40	148	230	35.65
AT3G48580	Arabidopsis thaliana	4e-39	144	260	33.08
PP00346G00070	Physcomitrella patens	4e-39	146	256	34.77
OS02G46910	Oryza sativa	5e-38	142	275	33.09
PP00089G00960	Physcomitrella patens	1e-36	136	152	44.74
OS10G42670	Oryza sativa	8e-35	133	242	35.12
ATR_00337G00020	Amborella trichopoda	6e-33	122	104	60.58
ATR_00062G00030	Amborella trichopoda	7e-33	122	104	56.73
ATR_00062G00010	Amborella trichopoda	3e-31	120	84	71.43
ATR_00069G00950	Amborella trichopoda	1e-20	92.4	173	32.95
PP00353G00180	Physcomitrella patens	1e-18	87.0	157	36.31
PP00024G01140	Physcomitrella patens	2e-18	89.4	174	35.06
ATR_00065G01730	Amborella trichopoda	7e-18	80.9	53	67.92
ATR_00055G01550	Amborella trichopoda	2e-16	77.8	116	37.93
ATR_01729G00020	Amborella trichopoda	2e-16	76.6	63	55.56
PP00037G01500	Physcomitrella patens	2e-16	83.2	171	30.41
OS03G02610	Oryza sativa	2e-16	81.3	185	32.43
PP00002G02710	Physcomitrella patens	3e-16	76.3	76	51.32
YLR213C	Saccharomyces cerevisiae strain S288C	1e-15	80.1	183	33.88
ATR_00004G02620	Amborella trichopoda	8e-14	70.1	53	52.83
ATR_00065G01780	Amborella trichopoda	1e-10	61.2	90	42.22
YGR189C	Saccharomyces cerevisiae strain S288C	2e-10	64.7	222	27.93
OS04G53950	Oryza sativa	7e-09	59.7	62	46.77
ATR_00065G01720	Amborella trichopoda	8e-06	47.8	22	81.82

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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