Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT5G53980	Arabidopsis thaliana	2e-111	320	157	100.00
ATR_00002G02270	Amborella trichopoda	9e-21	90.1	101	45.54
PP00031G00570	Physcomitrella patens	9e-21	90.5	117	43.59
PP00325G00280	Physcomitrella patens	2e-20	89.4	92	48.91
ATR_00078G00580	Amborella trichopoda	1e-19	87.0	97	48.45
PP00096G00880	Physcomitrella patens	1e-19	87.0	116	43.10
PP00004G00370	Physcomitrella patens	2e-19	87.4	111	46.85
PP00108G00210	Physcomitrella patens	2e-19	87.0	101	48.51
ATR_00010G03680	Amborella trichopoda	3e-19	86.3	124	43.55
PP00028G00270	Physcomitrella patens	3e-19	87.4	93	52.69
OS03G08960	Oryza sativa	4e-19	85.9	97	44.33
PP00143G00400	Physcomitrella patens	5e-19	85.5	92	47.83
PP00065G00220	Physcomitrella patens	6e-19	85.5	98	50.00
ATR_00059G01240	Amborella trichopoda	8e-19	84.0	101	45.54
OS08G32080	Oryza sativa	8e-19	85.1	102	45.10
OS08G32085	Oryza sativa	8e-19	85.1	102	45.10
PP00065G00260	Physcomitrella patens	9e-19	85.1	94	50.00
PP00034G01730	Physcomitrella patens	9e-19	85.5	94	48.94
AT5G15150	Arabidopsis thaliana	9e-19	84.7	125	40.80
PP00431G00110	Physcomitrella patens	1e-18	84.7	98	47.96
OS08G37580	Oryza sativa	3e-18	82.8	98	43.88
AT3G01220	Arabidopsis thaliana	4e-18	82.8	79	50.63
PP00154G00860	Physcomitrella patens	4e-18	83.2	119	43.70
OS09G29460	Oryza sativa	6e-18	82.4	101	42.57
AT1G69780	Arabidopsis thaliana	6e-18	82.4	101	43.56
OS09G21180	Oryza sativa	9e-18	82.0	113	40.71
ATR_00006G02980	Amborella trichopoda	1e-17	81.6	114	42.11
AT3G01470	Arabidopsis thaliana	1e-17	81.6	98	47.96
OS03G07450	Oryza sativa	1e-17	82.4	100	44.00
PP00077G00710	Physcomitrella patens	1e-17	81.6	95	46.32
OS09G35910	Oryza sativa	1e-17	80.9	106	39.62
ATR_00040G02980	Amborella trichopoda	2e-17	80.9	89	42.70
OS07G39320	Oryza sativa	3e-17	80.1	121	38.84
PP00034G01770	Physcomitrella patens	3e-17	81.3	92	47.83
AT5G65310	Arabidopsis thaliana	3e-17	80.5	104	40.38
OS02G49700	Oryza sativa	3e-17	80.9	98	45.92
AT2G18550	Arabidopsis thaliana	4e-17	79.7	123	34.96
AT4G36740	Arabidopsis thaliana	7e-17	79.0	100	42.00
AT4G40060	Arabidopsis thaliana	1e-16	79.0	71	52.11
PP00007G01530	Physcomitrella patens	1e-16	80.1	90	47.78
PP00028G00310	Physcomitrella patens	2e-16	79.0	114	42.11
AT2G22430	Arabidopsis thaliana	2e-16	78.2	97	41.24
ATR_00008G01350	Amborella trichopoda	2e-16	78.6	75	50.67
OS10G23090	Oryza sativa	3e-16	77.8	71	49.30
AT2G46680	Arabidopsis thaliana	4e-16	77.0	94	41.49
AT5G66700	Arabidopsis thaliana	5e-16	76.6	100	39.00
AT1G26960	Arabidopsis thaliana	1e-15	75.5	120	40.00
AT5G03790	Arabidopsis thaliana	1e-15	75.1	94	43.62
AT3G61890	Arabidopsis thaliana	3e-15	73.9	100	38.00
OS10G26500	Oryza sativa	4e-15	75.1	79	49.37
AT1G27045	Arabidopsis thaliana	4e-15	73.9	102	41.18
OS02G43330	Oryza sativa	4e-15	73.9	98	38.78
OS03G10210	Oryza sativa	5e-15	73.6	90	43.33
OS04G45810	Oryza sativa	6e-15	73.9	72	48.61
ATR_00027G00450	Amborella trichopoda	3e-13	68.2	88	38.64
OS06G04870	Oryza sativa	2e-11	64.3	98	41.84
AT2G36610	Arabidopsis thaliana	2e-11	62.8	99	37.37
OS04G46350	Oryza sativa	1e-10	61.6	119	37.82
OS06G04850	Oryza sativa	2e-10	60.8	63	49.21
AT1G70920	Arabidopsis thaliana	2e-09	57.0	71	46.48
AT4G17460	Arabidopsis thaliana	3e-09	57.8	60	51.67
OS10G41230	Oryza sativa	4e-09	57.8	85	42.35
emh94950	Emiliania huxleyi	5e-09	58.2	80	33.75
ATR_00024G03230	Amborella trichopoda	6e-09	56.2	87	40.23
ATR_00066G01440	Amborella trichopoda	7e-09	56.6	69	46.38
AT2G44910	Arabidopsis thaliana	8e-09	57.0	60	51.67
OS01G45570	Oryza sativa	9e-09	55.8	118	33.05
AT5G06710	Arabidopsis thaliana	1e-08	56.6	97	38.14
OS06G10600	Oryza sativa	1e-08	57.0	80	36.25
ATR_00024G01160	Amborella trichopoda	2e-08	56.2	87	40.23
AT4G16780	Arabidopsis thaliana	2e-08	55.5	60	51.67
OS10G42490	Oryza sativa	2e-08	56.2	95	33.68
AT5G47370	Arabidopsis thaliana	2e-08	55.5	60	50.00
OS02G35770	Oryza sativa	2e-08	55.5	100	37.00
PP00042G01070	Physcomitrella patens	2e-08	55.5	87	40.23
PP00042G01080	Physcomitrella patens	3e-08	55.5	87	40.23
AT3G60390	Arabidopsis thaliana	3e-08	55.1	116	33.62
PP00031G01590	Physcomitrella patens	4e-08	55.1	67	46.27
PP00031G01580	Physcomitrella patens	4e-08	54.7	67	46.27
OS03G12860	Oryza sativa	6e-08	54.3	116	36.21
OS09G27450	Oryza sativa	7e-08	54.3	60	50.00
PP00454G00100	Physcomitrella patens	9e-08	52.4	111	30.63
PP00203G00090	Physcomitrella patens	1e-07	53.1	88	34.09
AT2G22800	Arabidopsis thaliana	1e-07	53.1	96	37.50
OS08G36220	Oryza sativa	2e-07	53.1	60	48.33
AT2G01430	Arabidopsis thaliana	2e-07	52.8	66	45.45
ATR_00048G01160	Amborella trichopoda	2e-07	52.8	92	40.22
OS07G24350	Oryza sativa	2e-07	50.4	65	40.00
AT4G37790	Arabidopsis thaliana	2e-07	52.4	87	40.23
ATR_00048G00420	Amborella trichopoda	2e-07	53.1	97	32.99
AT1G79840	Arabidopsis thaliana	3e-07	52.8	125	32.80
ATR_00026G01260	Amborella trichopoda	4e-07	51.6	98	36.73
ATR_00111G00480	Amborella trichopoda	5e-07	51.2	60	48.33
SPAC32A11.03c	Schizosaccharomyces pombe	5e-07	52.4	61	39.34
OS10G01470	Oryza sativa	5e-07	51.2	115	33.91
DDB_G0284293	Dictyostelium discoideum	1e-06	50.8	56	41.07
PP00173G00480	Physcomitrella patens	1e-06	50.8	77	33.77
OS02G05640	Oryza sativa	2e-06	49.3	91	37.36
PP00209G00060	Physcomitrella patens	3e-06	50.1	77	32.47
PP00059G00720	Physcomitrella patens	3e-06	50.1	89	28.09
OS08G04190	Oryza sativa	3e-06	50.1	77	35.06
ENSG00000273049	Homo sapiens	3e-06	47.4	66	34.85
FBgn0038852	Drosophila melanogaster	3e-06	49.3	76	35.53
ATR_00004G02640	Amborella trichopoda	4e-06	49.7	72	34.72
PP00084G01160	Physcomitrella patens	4e-06	49.3	77	32.47
PP00041G00170	Physcomitrella patens	4e-06	48.1	88	34.09
DDB_G0291075	Dictyostelium discoideum	4e-06	49.3	71	33.80
ENSMUSG00000043219	Mus musculus	5e-06	48.5	59	35.59
ENSG00000106006	Homo sapiens	5e-06	48.5	59	35.59
ENSG00000138136	Homo sapiens	5e-06	48.5	62	43.55
ENSMUSG00000025216	Mus musculus	6e-06	48.5	62	43.55
ATR_00024G00470	Amborella trichopoda	6e-06	48.9	72	34.72
AT4G04890	Arabidopsis thaliana	7e-06	48.5	78	38.46
OS09G35760	Oryza sativa	7e-06	48.5	95	32.63
WBGene00002989	Caenorhabditis elegans	7e-06	48.5	78	30.77
OS04G53540	Oryza sativa	7e-06	48.5	77	33.77
OS06G48290	Oryza sativa	9e-06	47.8	87	37.93
ENSMUSG00000022485	Mus musculus	1e-05	47.4	63	34.92

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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