Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Interactive Phylogenetics Module

Gene Id: AT5G01180

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT5G01180	Arabidopsis thaliana	0.0	1180	571	100.00
AT3G54140	Arabidopsis thaliana	0.0	912	568	73.94
ATR_00029G03190	Amborella trichopoda	0.0	822	565	70.09
OS01G04950	Oryza sativa	0.0	805	565	66.90
ATR_00029G03220	Amborella trichopoda	0.0	799	565	65.66
OS07G01070	Oryza sativa	0.0	733	560	64.29
OS03G51050	Oryza sativa	0.0	722	566	60.42
PP00114G00050	Physcomitrella patens	0.0	714	568	60.56
ATR_00024G00950	Amborella trichopoda	0.0	709	563	60.57
AT2G02040	Arabidopsis thaliana	0.0	708	563	59.50
OS03G13240	Oryza sativa	0.0	681	567	56.08
AT1G62200	Arabidopsis thaliana	0.0	651	564	55.85
ATR_00024G00980	Amborella trichopoda	0.0	620	569	56.59
OS03G13250	Oryza sativa	0.0	615	565	52.21
ATR_00024G00990	Amborella trichopoda	0.0	607	561	56.51
AT2G02020	Arabidopsis thaliana	0.0	592	568	51.23
OS01G67630	Oryza sativa	0.0	575	556	53.06
PP00173G00410	Physcomitrella patens	0.0	574	565	50.09
PP00171G00030	Physcomitrella patens	0.0	553	530	50.00
OS03G13274	Oryza sativa	0.0	552	562	48.58
PP00014G00620	Physcomitrella patens	0.0	552	567	47.27
PP00075G00110	Physcomitrella patens	0.0	545	562	47.86
OS10G02260	Oryza sativa	0.0	536	556	47.48
PP00133G00360	Physcomitrella patens	8e-179	526	566	46.11
PP00298G00140	Physcomitrella patens	9e-179	525	568	45.60
OS10G02100	Oryza sativa	2e-176	518	565	47.26
PP00113G00080	Physcomitrella patens	2e-176	521	584	46.75
PP00246G00590	Physcomitrella patens	5e-176	519	571	46.41
ATR_00067G01870	Amborella trichopoda	1e-175	518	572	44.93
OS10G02240	Oryza sativa	3e-174	513	548	48.18
ATR_00036G01320	Amborella trichopoda	5e-173	511	569	44.64
PP00389G00030	Physcomitrella patens	4e-172	509	576	43.75
ATR_00067G01930	Amborella trichopoda	2e-170	503	569	43.41
OS10G02220	Oryza sativa	4e-170	502	566	43.64
AP00G32420	Auxenochlorella protothecoides	3e-169	502	567	44.97
ATR_00120G00460	Amborella trichopoda	5e-169	501	555	45.95
CNC64A_010G00890	Chlorella sp NC64A	8e-169	499	543	46.22
PP00434G00170	Physcomitrella patens	2e-168	499	569	42.88
PP00116G00100	Physcomitrella patens	3e-166	494	569	46.05
OS10G02210	Oryza sativa	3e-166	493	536	44.78
HE0000G52310	Helicosporidium sp.	7e-166	493	537	45.62
ATR_00256G00010	Amborella trichopoda	1e-165	492	573	42.58
PP00400G00020	Physcomitrella patens	1e-164	488	535	47.29
AT1G68570	Arabidopsis thaliana	3e-164	488	575	45.74
AT2G40460	Arabidopsis thaliana	4e-164	487	566	42.93
PP00071G00970	Physcomitrella patens	9e-164	491	552	46.38
OS10G22560	Oryza sativa	1e-163	485	547	45.34
OS06G49220	Oryza sativa	2e-162	482	562	46.62
OS03G04570	Oryza sativa	4e-162	483	561	44.74
CV00G86190	Coccomyxa subellipsoidea C-169	2e-161	482	530	48.11
PP00302G00070	Physcomitrella patens	8e-159	476	551	43.56
AT5G46050	Arabidopsis thaliana	1e-158	473	570	43.16
OS10G33210	Oryza sativa	3e-158	473	569	42.71
ATR_00104G00420	Amborella trichopoda	2e-157	469	558	42.11
PI00G42080	Picochlorum sp. SENEW3 (SE3)	2e-156	472	553	45.21
OS06G49250	Oryza sativa	3e-156	466	533	45.03
OS02G48570	Oryza sativa	1e-155	466	565	42.48
OS04G50950	Oryza sativa	1e-154	463	551	42.47
HE0000G08520	Helicosporidium sp.	3e-154	464	596	41.44
OS10G33170	Oryza sativa	4e-154	462	566	43.11
ATR_00054G00270	Amborella trichopoda	4e-154	461	563	43.87
OS05G33960	Oryza sativa	2e-153	461	574	41.64
OS04G50940	Oryza sativa	1e-152	457	553	41.95
ATR_00002G04270	Amborella trichopoda	1e-152	458	557	42.37
ATR_00156G00390	Amborella trichopoda	3e-152	457	553	44.48
OS10G42870	Oryza sativa	2e-151	454	559	42.40
AT5G46040	Arabidopsis thaliana	3e-151	454	570	42.28
OS10G02080	Oryza sativa	7e-151	451	530	44.91
OS08G05910	Oryza sativa	6e-150	452	566	43.29
ATR_00149G00300	Amborella trichopoda	1e-149	451	564	40.78
OS05G34030	Oryza sativa	1e-148	449	557	41.47
AT4G21680	Arabidopsis thaliana	1e-148	447	572	41.43
PP00298G00190	Physcomitrella patens	3e-148	447	576	41.49
OS02G47090	Oryza sativa	1e-147	445	561	43.67
OS03G48180	Oryza sativa	7e-147	443	571	40.46
OS10G02340	Oryza sativa	9e-147	442	542	44.83
OS07G41250	Oryza sativa	2e-146	445	565	40.53
ATR_00186G00140	Amborella trichopoda	2e-146	442	551	42.47
AT3G53960	Arabidopsis thaliana	2e-146	442	564	40.60
RCC4223.05g02060	Picochlorum_RCC4223	3e-145	442	555	45.05
AT2G26690	Arabidopsis thaliana	5e-145	438	573	42.58
ATR_00165G00370	Amborella trichopoda	9e-144	435	561	42.07
AT2G37900	Arabidopsis thaliana	2e-143	434	562	40.04
OS06G15370	Oryza sativa	2e-143	434	564	41.84
AT5G19640	Arabidopsis thaliana	2e-143	435	568	40.32
AT5G13400	Arabidopsis thaliana	5e-143	434	564	42.20
ATR_00086G00940	Amborella trichopoda	5e-143	433	569	40.95
OS05G34010	Oryza sativa	2e-142	432	554	40.43
AT1G32450	Arabidopsis thaliana	1e-141	431	562	38.43
AT1G12110	Arabidopsis thaliana	1e-141	429	558	41.22
AP00G52100	Auxenochlorella protothecoides	2e-141	429	516	45.16
AC00G76010	Asterochloris sp. Cgr-DA1pho v2.0	6e-141	429	582	40.72
AT1G69870	Arabidopsis thaliana	3e-140	427	568	40.32
OS10G40600	Oryza sativa	4e-140	426	562	40.21
PI00G49640	Picochlorum sp. SENEW3 (SE3)	2e-138	422	545	43.49
CV00G87420	Coccomyxa subellipsoidea C-169	7e-138	420	563	41.39
OS03G60850	Oryza sativa	2e-137	419	564	39.36
RCC4223.18g01160	Picochlorum_RCC4223	1e-136	418	546	43.22
AP00G65500	Auxenochlorella protothecoides	4e-136	416	569	41.30
AT3G54450	Arabidopsis thaliana	8e-136	414	551	37.75
ATR_00019G00590	Amborella trichopoda	2e-134	409	547	40.59
ATR_00016G00080	Amborella trichopoda	3e-134	413	564	40.25
AT1G22540	Arabidopsis thaliana	5e-134	409	556	39.57
VC00G30280	Volvox carteri	1e-133	412	570	41.93
OS02G46460	Oryza sativa	1e-133	410	566	40.64
PP00072G00360	Physcomitrella patens	2e-133	411	576	37.85
ATR_00088G00540	Amborella trichopoda	3e-133	405	465	47.96
ATR_00022G01870	Amborella trichopoda	1e-132	407	575	40.70
AT1G59740	Arabidopsis thaliana	2e-132	406	557	38.42
ATR_00002G04300	Amborella trichopoda	2e-131	402	556	38.85
PP00143G00670	Physcomitrella patens	5e-129	403	588	39.63
OS03G01290	Oryza sativa	1e-128	396	557	39.86
AT1G72130	Arabidopsis thaliana	2e-128	394	562	37.37
ATR_00169G00300	Amborella trichopoda	4e-128	393	539	40.45
OS01G37590	Oryza sativa	5e-128	394	553	40.33
AT1G72140	Arabidopsis thaliana	1e-127	392	561	37.43
ATR_00067G01530	Amborella trichopoda	8e-126	385	463	42.33
AT1G72120	Arabidopsis thaliana	2e-125	387	569	38.84
OS10G42900	Oryza sativa	3e-124	384	542	39.30
OS01G65110	Oryza sativa	1e-123	382	566	36.22
OS01G65100	Oryza sativa	2e-123	382	567	36.51
AT3G21670	Arabidopsis thaliana	6e-123	381	569	39.19
OS06G49240	Oryza sativa	9e-123	376	434	42.63
AT1G69850	Arabidopsis thaliana	3e-122	379	586	37.03
AT1G18880	Arabidopsis thaliana	8e-122	379	549	36.43
AT1G72125	Arabidopsis thaliana	1e-121	377	550	37.82
AT1G22570	Arabidopsis thaliana	1e-121	377	567	38.80
AT1G22550	Arabidopsis thaliana	7e-121	375	565	37.52
OS01G68510	Oryza sativa	9e-121	376	556	36.51
AT1G33440	Arabidopsis thaliana	9e-121	376	568	36.62
OS12G44110	Oryza sativa	2e-120	375	546	38.10
ATR_00099G01020	Amborella trichopoda	1e-119	373	563	35.88
AT1G27040	Arabidopsis thaliana	2e-119	372	572	37.59
OS04G50930	Oryza sativa	7e-119	372	554	38.63
OS01G01360	Oryza sativa	1e-118	371	567	41.62
ATR_00078G00550	Amborella trichopoda	2e-118	370	586	37.37
AT1G27080	Arabidopsis thaliana	6e-118	368	558	37.10
OS12G44100	Oryza sativa	7e-118	368	550	35.45
OS06G21900	Oryza sativa	6e-115	362	568	36.44
ATR_00109G00940	Amborella trichopoda	3e-113	356	550	36.91
OS05G35650	Oryza sativa	7e-113	355	578	36.68
ATR_00036G01380	Amborella trichopoda	2e-112	350	434	40.78
OS01G54515	Oryza sativa	5e-112	351	516	38.18
OS05G35594	Oryza sativa	2e-110	347	547	35.10
OS04G39030	Oryza sativa	3e-110	348	568	38.91
AT5G62680	Arabidopsis thaliana	5e-108	343	550	35.09
OS01G65210	Oryza sativa	2e-107	345	549	34.43
OS05G27010	Oryza sativa	5e-106	335	467	39.83
OS06G38294	Oryza sativa	8e-106	337	589	37.01
AT3G47960	Arabidopsis thaliana	1e-105	338	548	35.22
AT5G62730	Arabidopsis thaliana	9e-104	332	587	33.73
AT1G52190	Arabidopsis thaliana	3e-100	323	573	32.98
OS04G36040	Oryza sativa	4e-99	320	572	34.97
AT3G16180	Arabidopsis thaliana	1e-98	318	568	32.75
ATR_00045G01590	Amborella trichopoda	2e-98	315	465	39.35
OS04G56560	Oryza sativa	5e-97	315	579	33.16
ATR_00118G00290	Amborella trichopoda	1e-96	307	401	38.65
AT5G28470	Arabidopsis thaliana	2e-96	311	559	32.20
ATR_00089G01050	Amborella trichopoda	5e-96	310	564	32.45
OS11G17970	Oryza sativa	2e-95	310	581	33.56
OS04G41450	Oryza sativa	4e-95	308	561	34.58
OS11G12740	Oryza sativa	5e-94	307	581	35.28
AT5G14940	Arabidopsis thaliana	1e-93	304	557	31.24
OS01G67640	Oryza sativa	5e-93	304	350	47.43
AT1G69860	Arabidopsis thaliana	5e-92	300	571	32.05
OS11G18044	Oryza sativa	6e-92	300	569	33.04
OS04G59480	Oryza sativa	3e-91	296	554	32.49
ATR_00055G01460	Amborella trichopoda	4e-90	293	526	33.65
OS04G41400	Oryza sativa	5e-88	290	570	32.81
OS01G55610	Oryza sativa	7e-88	290	555	33.51
OS01G65150	Oryza sativa	4e-87	286	554	33.75
AT3G45650	Arabidopsis thaliana	1e-86	286	564	31.03
OS06G13210	Oryza sativa	2e-85	282	570	33.16
AT3G45660	Arabidopsis thaliana	3e-85	282	529	32.89
OS12G12934	Oryza sativa	1e-83	278	573	33.33
OS01G55600	Oryza sativa	2e-83	278	546	33.70
AT3G45680	Arabidopsis thaliana	4e-83	276	568	31.16
AT3G01350	Arabidopsis thaliana	4e-83	276	570	28.95
OS01G65169	Oryza sativa	6e-83	275	563	33.75
OS11G23890	Oryza sativa	4e-82	276	568	29.58
AT3G25260	Arabidopsis thaliana	4e-82	272	547	31.44
OS06G13200	Oryza sativa	9e-79	264	561	32.44
AT3G45720	Arabidopsis thaliana	1e-78	265	561	30.12
AT3G45710	Arabidopsis thaliana	5e-77	260	569	27.94
AT3G45700	Arabidopsis thaliana	7e-76	257	560	28.39
ATR_00024G00970	Amborella trichopoda	8e-75	244	271	47.97
ATR_00118G00320	Amborella trichopoda	7e-73	243	263	49.05
AT3G25280	Arabidopsis thaliana	4e-72	246	563	30.73
ATR_00112G00370	Amborella trichopoda	1e-71	241	347	38.90
OS05G27304	Oryza sativa	7e-71	244	577	29.81
OS10G05780	Oryza sativa	4e-70	241	564	31.21
HE0000G42610	Helicosporidium sp.	6e-69	229	221	48.87
PP00147G00390	Physcomitrella patens	7e-69	230	206	52.91
ATR_00070G00600	Amborella trichopoda	1e-68	230	280	41.79
OS01G65140	Oryza sativa	4e-68	230	266	44.74
phs97310	Phytophtora sojae	8e-68	236	565	29.73
AT3G45690	Arabidopsis thaliana	1e-67	234	546	28.75
OS11G18110	Oryza sativa	3e-67	234	466	30.90
CNC64A_007G03700	Chlorella sp NC64A	2e-66	229	213	51.64
ENSG00000139370	Homo sapiens	7e-65	228	562	29.89
CR04G03930	Chlamydomonas reinhardtii	1e-64	231	252	46.83
ATR_00118G00300	Amborella trichopoda	3e-61	209	258	43.02
OS08G41590	Oryza sativa	3e-59	208	455	30.11
ATR_00162G00100	Amborella trichopoda	4e-59	205	276	42.39
ENSMUSG00000029416	Mus musculus	5e-59	212	576	28.82
PP00069G00140	Physcomitrella patens	3e-57	206	578	26.12
Naga_100030g44	Nannochloropsis gaditana	4e-57	208	442	32.81
OS05G34000	Oryza sativa	2e-56	206	262	40.46
OS04G41410	Oryza sativa	3e-56	202	462	29.87
ATR_00002G04290	Amborella trichopoda	5e-55	195	325	34.46
phs319720	Phytophtora sojae	3e-54	200	582	27.84
DDB_G0272550	Dictyostelium discoideum	2e-50	187	484	28.31
phs89090	Phytophtora sojae	1e-48	183	593	26.81
HE0000G35580	Helicosporidium sp.	2e-48	175	254	42.13
OS01G65190	Oryza sativa	4e-48	182	272	39.34
PP00009G01060	Physcomitrella patens	1e-47	179	542	26.94
AT2G38100	Arabidopsis thaliana	7e-47	177	522	27.59
OS01G65200	Oryza sativa	9e-45	167	367	32.97
OS01G65120	Oryza sativa	2e-44	169	228	39.47
PP00004G00090	Physcomitrella patens	2e-43	162	295	33.90
ATR_00023G02330	Amborella trichopoda	6e-43	160	259	34.75
phs42450	Phytophtora sojae	8e-43	166	569	27.94
FC006G04490	Fragilariopsis cylindrus	1e-42	165	520	25.96
ATR_00020G00660	Amborella trichopoda	2e-42	157	245	39.18
ATR_00023G02340	Amborella trichopoda	9e-41	154	279	31.54
PP00065G01500	Physcomitrella patens	5e-40	156	536	26.12
FBgn0028491	Drosophila melanogaster	2e-39	157	444	25.90
AT5G11570	Arabidopsis thaliana	9e-39	152	268	34.33
ENSMUSG00000025557	Mus musculus	3e-38	153	408	25.74
ATR_00024G00960	Amborella trichopoda	1e-37	141	118	54.24
ENSMUSG00000022899	Mus musculus	1e-37	151	432	25.93
ATR_00054G00250	Amborella trichopoda	3e-37	140	201	38.31
FBgn0265575	Drosophila melanogaster	3e-37	151	375	29.33
AA0009G01620	Aureococcus anophagefferens	3e-37	148	525	25.52
ATR_00070G00590	Amborella trichopoda	7e-37	142	227	37.00
WBGene00003877	Caenorhabditis elegans	4e-36	148	408	25.49
ENSG00000163406	Homo sapiens	4e-36	147	392	27.30
phs07850	Phytophtora sojae	1e-35	144	570	25.61
ATR_00162G00110	Amborella trichopoda	6e-35	134	162	42.59
AA0005G00440	Aureococcus anophagefferens	5e-34	137	484	27.89
WBGene00003878	Caenorhabditis elegans	9e-34	140	411	28.47
DDB_G0272468	Dictyostelium discoideum	3e-33	139	486	27.16
PTI_12G03880	Phaeodactylum tricornutum	4e-33	137	554	25.27
ES0453G00050	Ectocarpus siliculosus	1e-31	132	307	32.25
OS06G49230	Oryza sativa	7e-31	122	106	50.00
WBGene00003876	Caenorhabditis elegans	1e-30	130	428	26.40
OS05G27050	Oryza sativa	1e-30	120	119	42.86
ATR_00118G00280	Amborella trichopoda	1e-29	120	156	41.67
DDB_G0267874	Dictyostelium discoideum	2e-29	127	530	24.72
phs07890	Phytophtora sojae	4e-27	113	173	39.88
YKR093W	Saccharomyces cerevisiae strain S288C	8e-27	119	518	26.45
FC056G00710	Fragilariopsis cylindrus	1e-26	118	528	25.00
TP04G00530	Thalassiosira pseudonana	1e-26	118	534	24.16
SPBC13A2.04c	Schizosaccharomyces pombe	3e-26	117	507	25.64
phs255230	Phytophtora sojae	5e-26	116	584	23.12
ENSG00000188991	Homo sapiens	1e-23	108	538	24.35
ATR_00067G01540	Amborella trichopoda	2e-23	102	194	32.47
OS03G17770	Oryza sativa	1e-22	103	127	42.52
gsu136190	Galdieria sulphuraria	6e-22	102	298	27.18
phs42430	Phytophtora sojae	9e-22	102	444	25.68
phs31460	Phytophtora sojae	1e-21	102	586	22.70
FC015G01430	Fragilariopsis cylindrus	4e-21	101	558	24.55
FC011G01070	Fragilariopsis cylindrus	5e-21	100	547	23.95
OS12G13790	Oryza sativa	4e-20	97.4	184	36.96
ATR_00109G00960	Amborella trichopoda	6e-20	92.0	157	33.76
OS04G34640	Oryza sativa	3e-19	92.0	98	51.02
emh586030	Emiliania huxleyi	9e-19	93.2	503	23.86
ATR_00096G00160	Amborella trichopoda	2e-18	89.0	101	47.52
ATR_00088G00530	Amborella trichopoda	2e-17	83.6	90	43.33
ATR_00020G00670	Amborella trichopoda	2e-17	84.7	117	41.88
PTI_12G02910	Phaeodactylum tricornutum	1e-16	87.4	240	31.25
phs239650	Phytophtora sojae	2e-15	80.9	203	29.06
OS07G21960	Oryza sativa	5e-15	79.7	307	26.38
OS02G52060	Oryza sativa	6e-15	79.7	116	37.93
FC009G05560	Fragilariopsis cylindrus	7e-15	81.6	224	29.46
emh44980	Emiliania huxleyi	1e-13	76.6	396	23.74
phs31400	Phytophtora sojae	3e-13	76.3	501	21.56
TP08G01040	Thalassiosira pseudonana	4e-13	75.9	206	31.07
ATR_00089G01060	Amborella trichopoda	3e-12	68.6	64	45.31
RCC4223.111g00230	Picochlorum_RCC4223	6e-12	72.0	266	28.95
ES0051G00510	Ectocarpus siliculosus	3e-11	66.6	71	42.25
ATR_00048G01070	Amborella trichopoda	3e-11	65.9	72	45.83
ATR_00162G00120	Amborella trichopoda	6e-10	62.4	105	33.33
FBgn0037730	Drosophila melanogaster	7e-10	65.9	154	30.52
OS08G31960	Oryza sativa	5e-09	61.6	73	46.58
OS08G41600	Oryza sativa	9e-09	58.9	82	35.37
OT_11G01550	Ostreococcus tauri	2e-08	60.8	455	20.66
emh670440	Emiliania huxleyi	3e-08	59.3	165	26.67
OS02G31980	Oryza sativa	6e-08	55.8	96	33.33
OS01G65130	Oryza sativa	2e-07	54.3	84	34.52
ORCC809_11G02490	Ostreococcus sp RCC809	7e-07	55.8	450	20.89
OS01G28980	Oryza sativa	3e-06	50.8	55	43.64
OS10G02230	Oryza sativa	8e-06	51.2	44	50.00
FC090G00210	Fragilariopsis cylindrus	9e-06	52.8	244	25.82

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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