Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G36360	Arabidopsis thaliana	0.0	1793	857	100.00
ATR_00002G03330	Amborella trichopoda	0.0	1298	821	72.11
OS03G06940	Oryza sativa	0.0	1285	817	70.38
AT3G13750	Arabidopsis thaliana	0.0	1150	832	64.30
OS01G39830	Oryza sativa	0.0	1120	814	64.00
AT1G45130	Arabidopsis thaliana	0.0	1105	732	69.26
ATR_00136G00600	Amborella trichopoda	0.0	1082	753	68.13
AT4G26140	Arabidopsis thaliana	0.0	965	727	61.90
ATR_00175G00070	Amborella trichopoda	0.0	965	832	54.93
AT3G52840	Arabidopsis thaliana	0.0	954	721	61.72
AT2G28470	Arabidopsis thaliana	0.0	943	830	56.02
OS02G12730	Oryza sativa	0.0	942	706	62.89
OS06G37560	Oryza sativa	0.0	939	700	62.71
AT5G56870	Arabidopsis thaliana	0.0	935	706	61.61
OS03G15020	Oryza sativa	0.0	914	833	54.02
ATR_00054G00420	Amborella trichopoda	0.0	899	856	51.17
PP00010G00770	Physcomitrella patens	0.0	887	849	51.35
OS01G65460	Oryza sativa	0.0	872	821	51.64
AT2G32810	Arabidopsis thaliana	0.0	860	877	50.06
ATR_00032G00700	Amborella trichopoda	0.0	852	822	51.34
PP00189G00400	Physcomitrella patens	0.0	850	820	52.20
ATR_00007G03940	Amborella trichopoda	0.0	840	825	50.06
OS12G24170	Oryza sativa	0.0	843	869	49.37
PP00024G00380	Physcomitrella patens	0.0	823	829	50.18
PP00189G00350	Physcomitrella patens	0.0	814	857	49.12
AT5G63810	Arabidopsis thaliana	0.0	780	747	50.47
ATR_00138G00250	Amborella trichopoda	0.0	781	839	47.68
AT1G77410	Arabidopsis thaliana	0.0	769	843	47.92
AT5G20710	Arabidopsis thaliana	0.0	766	825	47.88
AT1G31740	Arabidopsis thaliana	0.0	717	841	44.59
AT2G16730	Arabidopsis thaliana	0.0	717	830	44.10
OS10G19960	Oryza sativa	0.0	716	834	45.20
OS01G34920	Oryza sativa	0.0	706	835	44.67
OS10G18400	Oryza sativa	0.0	703	836	45.10
AT5G63800	Arabidopsis thaliana	0.0	692	736	49.05
AT4G35010	Arabidopsis thaliana	0.0	692	830	42.65
OS08G43570	Oryza sativa	0.0	676	839	42.07
OS06G42310	Oryza sativa	0.0	667	833	43.70
OS09G36810	Oryza sativa	0.0	666	825	42.18
OS05G35360	Oryza sativa	0.0	657	834	42.69
ATR_00054G00480	Amborella trichopoda	0.0	648	721	47.99
ATR_00117G00160	Amborella trichopoda	0.0	637	664	50.90
AT4G38590	Arabidopsis thaliana	0.0	622	836	40.19
DDB_G0285637	Dictyostelium discoideum	4e-154	477	743	36.74
gsu50160	Galdieria sulphuraria	1e-95	331	466	40.34
gsu11780	Galdieria sulphuraria	4e-95	318	570	34.21
gsu137250	Galdieria sulphuraria	2e-89	306	763	28.18
CM16G00790	Cyanidioschyzon merolae	8e-73	260	477	34.59
ccr06460	Chondrus crispus	5e-72	251	332	40.66
ATR_00012G01310	Amborella trichopoda	5e-69	247	175	62.29
ATR_00117G00150	Amborella trichopoda	1e-68	233	228	47.81
phs380650	Phytophtora sojae	6e-57	217	276	39.49
AT2G04060	Arabidopsis thaliana	2e-54	200	369	34.42
FC009G01330	Fragilariopsis cylindrus	1e-50	196	844	25.36
PTI_07G03990	Phaeodactylum tricornutum	3e-50	196	820	26.10
AT1G72990	Arabidopsis thaliana	7e-44	173	355	35.49
ENSMUSG00000031966	Mus musculus	6e-43	169	312	35.26
ENSG00000166105	Homo sapiens	8e-43	170	323	34.37
ENSMUSG00000045594	Mus musculus	3e-42	168	333	34.53
CV00G05160	Coccomyxa subellipsoidea C-169	7e-42	166	327	35.78
PP00149G00960	Physcomitrella patens	4e-41	165	319	33.54
HE0000G11640	Helicosporidium sp.	5e-41	165	345	33.91
ENSG00000170266	Homo sapiens	6e-41	164	345	32.46
ENSMUSG00000026200	Mus musculus	7e-41	164	316	35.76
ATR_00052G01140	Amborella trichopoda	6e-40	161	324	33.33
OS05G46200	Oryza sativa	4e-39	159	330	33.03
ENSG00000149328	Homo sapiens	8e-39	157	317	33.44
PP00052G01170	Physcomitrella patens	2e-38	157	349	31.52
FBgn0260746	Drosophila melanogaster	5e-38	155	335	32.24
emh679070	Emiliania huxleyi	3e-37	155	345	30.72
FBgn0001089	Drosophila melanogaster	3e-37	153	328	32.01
AA0019G00640	Aureococcus anophagefferens	1e-36	154	363	32.23
CV00G04570	Coccomyxa subellipsoidea C-169	2e-36	151	363	31.40
AP00G08760	Auxenochlorella protothecoides	3e-36	150	344	32.85
AA0028G00760	Aureococcus anophagefferens	4e-35	146	359	29.25
AC00G74030	Asterochloris sp. Cgr-DA1pho v2.0	5e-35	146	322	31.68
emh95410	Emiliania huxleyi	9e-35	147	366	29.51
WBGene00011832	Caenorhabditis elegans	1e-34	145	314	33.76
DDB_G0290217	Dictyostelium discoideum	6e-34	143	342	29.24
CV00G15560	Coccomyxa subellipsoidea C-169	2e-33	141	278	36.33
CNC64A_026G00130	Chlorella sp NC64A	2e-33	142	344	31.40
CV00G47300	Coccomyxa subellipsoidea C-169	3e-31	135	358	30.45
gsu130780	Galdieria sulphuraria	3e-27	123	326	29.14
CV00G04560	Coccomyxa subellipsoidea C-169	4e-27	122	329	29.48
ENSMUSG00000079644	Mus musculus	1e-26	120	303	29.70
gsu88310	Galdieria sulphuraria	2e-25	117	405	28.89
gsu88290	Galdieria sulphuraria	2e-24	114	434	27.42
CV00G04120	Coccomyxa subellipsoidea C-169	5e-23	103	114	42.11
AA0006G02790	Aureococcus anophagefferens	3e-21	96.7	106	41.51
WBGene00019225	Caenorhabditis elegans	4e-21	102	312	30.13
gsu69750	Galdieria sulphuraria	5e-15	84.0	168	30.95
ccr87600	Chondrus crispus	1e-14	82.4	205	28.78
ATR_00054G00450	Amborella trichopoda	5e-14	74.3	99	42.42
emh111480	Emiliania huxleyi	4e-12	73.9	316	26.27
gsu73210	Galdieria sulphuraria	1e-10	68.2	376	22.87
AT3G53080	Arabidopsis thaliana	1e-09	62.8	83	34.94
AT3G53075	Arabidopsis thaliana	2e-09	62.0	82	31.71
emh379590	Emiliania huxleyi	3e-08	57.4	100	37.00
AT3G53050	Arabidopsis thaliana	3e-07	55.1	63	31.75
OS05G35370	Oryza sativa	3e-06	52.0	91	38.46
AT3G53065	Arabidopsis thaliana	3e-06	52.0	64	34.38

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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