Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G31590	Arabidopsis thaliana	0.0	1422	693	100.00
AT2G24630	Arabidopsis thaliana	0.0	1264	694	88.33
ATR_00019G01680	Amborella trichopoda	0.0	1102	697	77.62
OS08G15420	Oryza sativa	0.0	959	745	66.58
ATR_00065G00270	Amborella trichopoda	0.0	957	718	67.27
PP00162G00740	Physcomitrella patens	0.0	950	702	67.52
PP00019G01110	Physcomitrella patens	0.0	933	702	67.24
PP00373G00150	Physcomitrella patens	0.0	925	702	66.52
OS09G25900	Oryza sativa	0.0	918	688	70.35
PP00224G00220	Physcomitrella patens	0.0	915	699	65.24
AT3G28180	Arabidopsis thaliana	0.0	913	691	67.29
AT4G07960	Arabidopsis thaliana	0.0	912	718	65.88
PP00089G01080	Physcomitrella patens	0.0	907	700	64.57
PP00015G00680	Physcomitrella patens	0.0	900	702	64.39
PP00164G00010	Physcomitrella patens	0.0	883	702	63.82
AT3G07330	Arabidopsis thaliana	0.0	862	690	62.03
ATR_00013G02120	Amborella trichopoda	0.0	856	673	65.68
OS07G03260	Oryza sativa	0.0	846	686	64.14
OS05G43530	Oryza sativa	0.0	844	678	64.01
OS01G56130	Oryza sativa	0.0	828	693	62.77
OS03G56060	Oryza sativa	0.0	721	466	75.75
PP00065G00990	Physcomitrella patens	6e-148	448	535	42.62
PP00036G00370	Physcomitrella patens	2e-147	447	533	42.59
PP00036G01070	Physcomitrella patens	2e-147	447	535	42.43
ATR_00040G02570	Amborella trichopoda	1e-144	440	532	43.23
AT5G03760	Arabidopsis thaliana	1e-144	440	529	43.48
OS02G09930	Oryza sativa	7e-144	437	533	42.03
AT5G22740	Arabidopsis thaliana	7e-142	432	559	39.71
AT1G23480	Arabidopsis thaliana	4e-139	426	459	45.53
AT2G35650	Arabidopsis thaliana	1e-136	420	521	41.65
OS06G42020	Oryza sativa	3e-136	418	539	39.33
AT1G24070	Arabidopsis thaliana	4e-136	419	531	40.49
AT4G13410	Arabidopsis thaliana	1e-135	417	441	45.12
OS07G43710	Oryza sativa	1e-132	410	537	40.41
AT5G16190	Arabidopsis thaliana	9e-132	403	473	43.13
OS08G33740	Oryza sativa	1e-130	405	496	40.93
OS03G07350	Oryza sativa	2e-129	401	467	42.18
OS02G51060	Oryza sativa	4e-129	400	540	38.52
AT3G56000	Arabidopsis thaliana	3e-127	395	434	45.85
OS03G26044	Oryza sativa	1e-124	389	546	39.56
OS10G26630	Oryza sativa	6e-123	384	469	41.58
MP16G01280	Micromonas pusilla strain CCMP1545	1e-122	381	464	40.95
MRCC299_10G04230	Micromonas sp RCC299	1e-121	379	486	41.36
OM_17G00960	Ostreococcus mediterraneus	5e-118	373	521	37.24
OT_17G00830	Ostreococcus tauri	2e-116	367	429	42.42
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	9e-115	362	538	37.55
CV00G12800	Coccomyxa subellipsoidea C-169	7e-114	361	521	37.04
BPRRCC1105_06G01240	Bathycoccus prasinos	2e-113	362	548	37.41
PI00G51280	Picochlorum sp. SENEW3 (SE3)	2e-113	362	421	39.90
AP00G21430	Auxenochlorella protothecoides	1e-111	357	436	40.14
RCC4223.04g03450	Picochlorum_RCC4223	3e-110	354	429	39.16
CV00G12810	Coccomyxa subellipsoidea C-169	2e-109	345	465	41.08
AT4G16590	Arabidopsis thaliana	7e-109	342	424	40.33
HE0000G41170	Helicosporidium sp.	1e-108	349	433	40.88
ATR_00072G01360	Amborella trichopoda	2e-108	338	309	51.78
OL16G00900	Ostreococcus lucimarinus	1e-107	343	533	35.83
OS06G12460	Oryza sativa	9e-104	336	415	41.20
ORCC809_16G01780	Ostreococcus sp RCC809	5e-101	327	448	38.39
CNC64A_025G01180	Chlorella sp NC64A	2e-89	299	427	36.30
VC00G68920	Volvox carteri	2e-74	257	372	38.71
CR06G04470	Chlamydomonas reinhardtii	1e-72	253	367	39.24
OS09G26770	Oryza sativa	2e-59	213	387	34.63
emh181270	Emiliania huxleyi	6e-46	171	248	40.32
emh488170	Emiliania huxleyi	6e-46	171	248	40.32
ATR_00067G00360	Amborella trichopoda	4e-37	140	125	70.40
OM_13G00450	Ostreococcus mediterraneus	7e-27	120	248	31.45
OT_14G02980	Ostreococcus tauri	1e-26	120	292	28.42
ORCC809_20G02860	Ostreococcus sp RCC809	9e-26	117	245	30.61
OL20G02910	Ostreococcus lucimarinus	1e-25	117	291	31.62
ES0097G00210	Ectocarpus siliculosus	7e-21	102	295	30.51
ES0097G00300	Ectocarpus siliculosus	1e-19	98.2	317	29.65
Naga_100049g27	Nannochloropsis gaditana	3e-18	93.2	294	26.87
Naga_100079g22	Nannochloropsis gaditana	3e-17	89.7	339	26.55
OS11G13650	Oryza sativa	2e-16	84.0	248	32.66
DDB_G0269124	Dictyostelium discoideum	5e-16	86.3	261	27.97
ES0185G00090	Ectocarpus siliculosus	1e-15	85.5	359	26.74
ES0200G00060	Ectocarpus siliculosus	2e-15	84.7	237	30.38
PP00372G00370	Physcomitrella patens	3e-14	80.1	259	29.34
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	4e-12	73.2	278	27.34
ES0097G00120	Ectocarpus siliculosus	6e-12	73.2	220	32.27
emh647580	Emiliania huxleyi	3e-11	70.9	249	26.51
ccr65060	Chondrus crispus	3e-10	67.4	302	23.84
PI00G46760	Picochlorum sp. SENEW3 (SE3)	8e-10	66.6	267	24.34
PI00G60790	Picochlorum sp. SENEW3 (SE3)	9e-10	66.2	267	24.34
CV00G13860	Coccomyxa subellipsoidea C-169	3e-09	64.7	249	26.51
OS10G25740	Oryza sativa	3e-09	60.5	83	38.55
RCC4223.10g01020	Picochlorum_RCC4223	3e-09	64.7	267	24.34
CV00G28250	Coccomyxa subellipsoidea C-169	4e-09	64.3	238	26.47
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	5e-09	63.9	218	26.15
CV00G83580	Coccomyxa subellipsoidea C-169	7e-09	63.5	185	29.73
RCC4223.10g00870	Picochlorum_RCC4223	1e-08	62.4	276	24.64
AP00G07320	Auxenochlorella protothecoides	2e-08	62.0	287	24.04
ccr13740	Chondrus crispus	3e-08	61.2	275	24.00
CV00G40830	Coccomyxa subellipsoidea C-169	4e-08	60.8	310	22.58
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	1e-07	59.7	245	26.12
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	1e-07	59.3	209	25.84
CV00G01670	Coccomyxa subellipsoidea C-169	1e-07	59.3	250	23.60
AC00G21740	Asterochloris sp. Cgr-DA1pho v2.0	3e-07	58.2	279	25.81
PP00168G00010	Physcomitrella patens	2e-06	50.8	55	43.64
AC00G02440	Asterochloris sp. Cgr-DA1pho v2.0	6e-06	53.9	207	25.12

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment