Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G28500	Arabidopsis thaliana	0.0	634	306	100.00
OS01G48130	Oryza sativa	2e-121	358	247	72.47
OS05G48850	Oryza sativa	2e-115	343	234	72.22
ATR_00021G01800	Amborella trichopoda	9e-107	319	190	80.00
AT1G28470	Arabidopsis thaliana	3e-103	311	246	65.85
OS01G09550	Oryza sativa	3e-95	297	213	67.61
AT4G29230	Arabidopsis thaliana	5e-95	296	205	70.24
AT5G56620	Arabidopsis thaliana	5e-87	272	200	68.00
OS06G36480	Oryza sativa	3e-82	265	229	60.26
OS05G10620	Oryza sativa	3e-80	254	212	57.55
PP00251G00100	Physcomitrella patens	5e-70	231	187	59.36
ATR_00060G00140	Amborella trichopoda	2e-69	228	173	64.16
ATR_00049G02480	Amborella trichopoda	1e-66	219	188	57.45
OS02G38130	Oryza sativa	2e-65	217	236	47.88
AT1G25580	Arabidopsis thaliana	2e-63	213	223	49.78
AT5G14490	Arabidopsis thaliana	3e-53	184	187	51.34
AT3G01600	Arabidopsis thaliana	2e-52	182	188	51.06
OS03G12120	Oryza sativa	2e-32	132	168	38.10
ATR_00079G00320	Amborella trichopoda	3e-15	78.2	166	34.94
AT3G04060	Arabidopsis thaliana	2e-14	76.3	182	33.52
AT3G29035	Arabidopsis thaliana	6e-14	74.7	260	27.69
PP00046G00880	Physcomitrella patens	7e-14	75.5	174	34.48
PP00279G00450	Physcomitrella patens	3e-13	73.6	242	30.99
PP00288G00030	Physcomitrella patens	3e-13	73.6	184	34.78
AT5G18270	Arabidopsis thaliana	7e-13	72.0	180	32.78
PP00227G00530	Physcomitrella patens	1e-12	71.6	174	33.91
OS03G42630	Oryza sativa	1e-12	71.2	168	33.93
AT1G33060	Arabidopsis thaliana	1e-12	71.6	162	32.72
OS04G38720	Oryza sativa	3e-12	70.1	152	32.89
AT1G02230	Arabidopsis thaliana	3e-12	70.1	192	29.17
AT5G61430	Arabidopsis thaliana	6e-12	69.3	170	31.76
ATR_00099G01160	Amborella trichopoda	1e-11	68.6	215	27.44
AT5G07680	Arabidopsis thaliana	1e-11	68.6	170	32.35
AT5G53950	Arabidopsis thaliana	2e-11	67.8	180	32.78
AT3G18400	Arabidopsis thaliana	3e-11	67.0	165	32.12
OS02G36880	Oryza sativa	4e-11	67.0	168	30.95
ATR_00007G00320	Amborella trichopoda	6e-11	66.6	154	33.77
AT2G24430	Arabidopsis thaliana	7e-11	65.9	170	30.59
ATR_00140G00390	Amborella trichopoda	9e-11	66.2	173	32.95
ATR_00025G02090	Amborella trichopoda	1e-10	65.5	165	35.15
PP00159G00290	Physcomitrella patens	1e-10	65.9	173	31.79
OS02G42970	Oryza sativa	1e-10	65.5	162	30.25
AT5G39610	Arabidopsis thaliana	1e-10	64.7	182	31.87
ATR_00003G02960	Amborella trichopoda	2e-10	65.1	147	33.33
OS08G06140	Oryza sativa	2e-10	65.9	180	28.33
AT1G01720	Arabidopsis thaliana	2e-10	64.3	150	33.33
OS10G33760	Oryza sativa	3e-10	64.3	178	30.34
OS07G37920	Oryza sativa	3e-10	64.7	147	32.65
ATR_00022G01610	Amborella trichopoda	3e-10	62.0	147	35.37
OS03G60080	Oryza sativa	4e-10	63.9	143	32.17
OS09G32260	Oryza sativa	4e-10	63.9	171	30.99
ATR_00009G03060	Amborella trichopoda	4e-10	63.5	150	33.33
OS03G21030	Oryza sativa	4e-10	63.9	146	32.88
ATR_00011G01520	Amborella trichopoda	4e-10	63.5	163	30.06
ATR_00119G00250	Amborella trichopoda	5e-10	63.9	172	31.40
AT4G35580	Arabidopsis thaliana	5e-10	63.9	154	32.47
OS11G03300	Oryza sativa	5e-10	63.5	152	32.89
AT5G09330	Arabidopsis thaliana	5e-10	63.9	146	34.93
OS01G29840	Oryza sativa	8e-10	63.2	157	31.21
OS01G60020	Oryza sativa	9e-10	62.8	192	30.21
OS12G03040	Oryza sativa	1e-09	62.8	152	32.89
AT1G79580	Arabidopsis thaliana	1e-09	62.8	163	31.29
AT5G04410	Arabidopsis thaliana	1e-09	63.2	170	30.00
AT1G33280	Arabidopsis thaliana	1e-09	62.4	180	27.22
OS01G01470	Oryza sativa	1e-09	62.4	157	31.21
AT3G15500	Arabidopsis thaliana	1e-09	62.4	143	34.27
AT5G24590	Arabidopsis thaliana	1e-09	62.8	182	30.22
AT3G10500	Arabidopsis thaliana	1e-09	62.8	170	28.82
OS10G42130	Oryza sativa	2e-09	62.0	143	32.87
AT5G14000	Arabidopsis thaliana	2e-09	60.5	161	29.81
ATR_00010G05180	Amborella trichopoda	2e-09	62.0	174	31.03
AT1G12260	Arabidopsis thaliana	2e-09	62.0	167	31.74
AT1G02220	Arabidopsis thaliana	3e-09	61.6	162	29.63
AT1G76420	Arabidopsis thaliana	3e-09	61.2	179	30.17
AT5G08790	Arabidopsis thaliana	3e-09	60.8	144	31.94
OS08G01330	Oryza sativa	4e-09	60.8	188	29.26
ATR_00068G01840	Amborella trichopoda	4e-09	60.8	163	30.06
OS07G48550	Oryza sativa	6e-09	60.1	145	33.10
AT4G10350	Arabidopsis thaliana	7e-09	60.1	167	26.95
PP00259G00330	Physcomitrella patens	7e-09	60.5	146	32.19
AT1G62700	Arabidopsis thaliana	7e-09	60.5	173	29.48
AT1G71930	Arabidopsis thaliana	7e-09	60.1	239	25.94
OS01G66120	Oryza sativa	8e-09	59.7	153	33.33
OS04G43560	Oryza sativa	9e-09	59.3	167	29.34
OS08G44820	Oryza sativa	9e-09	60.5	170	30.00
OS03G02800	Oryza sativa	9e-09	60.5	170	31.18
OS06G33940	Oryza sativa	9e-09	60.1	169	30.77
ATR_00001G01890	Amborella trichopoda	1e-08	58.9	153	33.99
AT5G13180	Arabidopsis thaliana	1e-08	58.9	170	31.18
OS07G12340	Oryza sativa	1e-08	58.9	144	32.64
AT1G02250	Arabidopsis thaliana	1e-08	59.7	182	28.57
PP00010G00480	Physcomitrella patens	1e-08	60.1	170	28.24
PP00015G01130	Physcomitrella patens	2e-08	59.3	155	34.19
OS08G40030	Oryza sativa	2e-08	58.9	174	29.89
AT5G46590	Arabidopsis thaliana	2e-08	58.5	165	29.70
PP00327G00350	Physcomitrella patens	2e-08	58.9	196	29.59
OS12G03050	Oryza sativa	2e-08	58.9	189	31.75
PP00259G00270	Physcomitrella patens	2e-08	58.9	176	30.11
AT5G62380	Arabidopsis thaliana	2e-08	58.5	216	25.46
AT2G43000	Arabidopsis thaliana	3e-08	58.2	160	33.12
OS01G01430	Oryza sativa	3e-08	58.5	152	32.24
PP00182G00140	Physcomitrella patens	3e-08	58.5	198	26.77
PP00117G00060	Physcomitrella patens	3e-08	58.5	146	31.51
ATR_00067G00400	Amborella trichopoda	3e-08	57.4	166	28.31
AT1G52890	Arabidopsis thaliana	3e-08	58.2	143	32.87
OS12G41680	Oryza sativa	4e-08	57.8	192	30.73
PP00164G00100	Physcomitrella patens	4e-08	58.2	170	30.59
OS11G03370	Oryza sativa	4e-08	57.8	185	32.43
PP00008G00150	Physcomitrella patens	5e-08	58.2	146	30.82
AT4G36160	Arabidopsis thaliana	5e-08	57.4	164	29.88
OS01G66490	Oryza sativa	5e-08	57.8	193	28.50
ATR_00082G00230	Amborella trichopoda	5e-08	57.8	174	30.46
OS10G38834	Oryza sativa	5e-08	57.4	200	27.50
AT1G61110	Arabidopsis thaliana	6e-08	57.0	146	32.19
OS08G33910	Oryza sativa	7e-08	57.0	148	30.41
ATR_00092G01070	Amborella trichopoda	8e-08	57.0	175	29.14
ATR_00119G00120	Amborella trichopoda	8e-08	56.6	149	34.23
ATR_00071G00290	Amborella trichopoda	8e-08	57.4	144	31.94
OS05G34830	Oryza sativa	9e-08	56.6	144	31.94
AT1G77450	Arabidopsis thaliana	1e-07	55.8	147	32.65
AT3G49530	Arabidopsis thaliana	1e-07	56.6	179	27.93
AT5G63790	Arabidopsis thaliana	1e-07	55.8	145	31.72
OS11G08210	Oryza sativa	2e-07	55.8	144	33.33
PP00201G00290	Physcomitrella patens	2e-07	55.8	164	28.05
AT3G12910	Arabidopsis thaliana	2e-07	55.5	155	32.90
AT5G66300	Arabidopsis thaliana	2e-07	55.5	164	28.05
ATR_00022G00720	Amborella trichopoda	2e-07	55.8	170	27.65
OS03G04070	Oryza sativa	3e-07	55.1	200	28.50
PP00004G01080	Physcomitrella patens	4e-07	55.1	159	31.45
AT3G17730	Arabidopsis thaliana	4e-07	54.3	146	32.19
AT5G39820	Arabidopsis thaliana	4e-07	54.7	144	33.33
PP00259G00290	Physcomitrella patens	4e-07	53.9	148	31.08
AT4G17980	Arabidopsis thaliana	5e-07	54.3	150	32.00
OS06G01230	Oryza sativa	5e-07	54.7	167	29.94
AT3G15170	Arabidopsis thaliana	5e-07	54.3	151	30.46
OS04G40140	Oryza sativa	6e-07	53.1	68	51.47
AT1G54330	Arabidopsis thaliana	6e-07	53.9	146	33.56
OS09G38010	Oryza sativa	6e-07	53.1	151	31.79
PP00077G00210	Physcomitrella patens	6e-07	54.3	180	26.67
ATR_00119G00210	Amborella trichopoda	6e-07	54.3	157	29.30
AT3G61910	Arabidopsis thaliana	6e-07	53.9	150	28.00
OS07G48450	Oryza sativa	7e-07	53.9	144	30.56
OS06G01480	Oryza sativa	9e-07	53.9	174	27.59
OS08G33670	Oryza sativa	9e-07	53.5	188	30.32
OS09G38000	Oryza sativa	1e-06	53.5	210	28.10
ATR_00044G00300	Amborella trichopoda	1e-06	54.3	148	31.76
AT5G22290	Arabidopsis thaliana	1e-06	53.5	139	29.50
AT1G56010	Arabidopsis thaliana	1e-06	53.1	144	29.86
AT1G34180	Arabidopsis thaliana	1e-06	53.5	173	30.64
AT4G28530	Arabidopsis thaliana	2e-06	52.8	183	30.05
OS03G01870	Oryza sativa	2e-06	52.4	141	29.08
OS01G15640	Oryza sativa	2e-06	52.8	152	30.92
AT2G02450	Arabidopsis thaliana	2e-06	52.4	161	29.81
PP00073G00790	Physcomitrella patens	3e-06	52.8	170	27.65
AT1G32770	Arabidopsis thaliana	3e-06	52.4	146	28.77
OS09G24560	Oryza sativa	3e-06	52.0	192	29.17
ATR_00149G00460	Amborella trichopoda	3e-06	52.0	147	29.93
OS10G27390	Oryza sativa	4e-06	52.0	166	28.31
OS05G35170	Oryza sativa	4e-06	52.0	165	28.48
AT4G01550	Arabidopsis thaliana	5e-06	51.6	166	32.53
ATR_00017G02740	Amborella trichopoda	5e-06	50.1	158	28.48
OS08G02160	Oryza sativa	5e-06	51.2	168	29.17
PP00223G00040	Physcomitrella patens	7e-06	50.8	150	27.33
AT1G69490	Arabidopsis thaliana	9e-06	50.4	147	31.29

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment