Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G16590	Arabidopsis thaliana	0.0	837	402	100.00
AT1G24070	Arabidopsis thaliana	0.0	648	400	74.00
AT5G16190	Arabidopsis thaliana	0.0	640	400	75.25
AT4G13410	Arabidopsis thaliana	0.0	642	399	74.44
AT1G23480	Arabidopsis thaliana	0.0	586	400	66.00
OS06G42020	Oryza sativa	0.0	572	400	64.50
ATR_00040G02570	Amborella trichopoda	0.0	567	402	63.68
AT5G03760	Arabidopsis thaliana	0.0	552	400	62.00
AT5G22740	Arabidopsis thaliana	0.0	540	402	59.70
OS02G09930	Oryza sativa	0.0	537	401	61.10
OS03G07350	Oryza sativa	4e-179	518	401	58.10
PP00065G00990	Physcomitrella patens	3e-178	515	412	56.80
AT3G56000	Arabidopsis thaliana	4e-178	514	402	58.96
PP00036G00370	Physcomitrella patens	2e-177	513	412	57.28
PP00036G01070	Physcomitrella patens	3e-176	510	412	56.31
AT2G35650	Arabidopsis thaliana	2e-175	508	387	58.66
OS08G33740	Oryza sativa	2e-170	497	441	53.06
OS10G26630	Oryza sativa	6e-170	493	406	56.16
OS06G12460	Oryza sativa	1e-166	488	383	57.18
OS02G51060	Oryza sativa	1e-155	457	398	53.52
ATR_00072G01360	Amborella trichopoda	2e-147	428	287	65.16
OS07G43710	Oryza sativa	2e-146	436	400	50.50
OS03G26044	Oryza sativa	3e-144	429	404	50.25
PI00G51280	Picochlorum sp. SENEW3 (SE3)	3e-115	357	397	44.08
OS03G56060	Oryza sativa	4e-113	346	354	46.05
MRCC299_10G04230	Micromonas sp RCC299	9e-113	345	406	41.87
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	1e-112	347	396	42.68
AT3G28180	Arabidopsis thaliana	2e-112	351	350	46.29
RCC4223.04g03450	Picochlorum_RCC4223	3e-112	349	405	43.46
AT4G31590	Arabidopsis thaliana	7e-112	350	339	47.20
BPRRCC1105_06G01240	Bathycoccus prasinos	8e-112	348	395	44.05
PP00373G00150	Physcomitrella patens	8e-112	350	339	47.79
PP00162G00740	Physcomitrella patens	1e-110	347	346	47.11
PP00224G00220	Physcomitrella patens	5e-110	345	439	40.09
PP00089G01080	Physcomitrella patens	6e-110	345	439	40.09
OS09G25900	Oryza sativa	1e-109	344	336	47.32
OS08G15420	Oryza sativa	1e-109	345	330	48.18
ATR_00019G01680	Amborella trichopoda	2e-109	343	346	47.69
AT2G24630	Arabidopsis thaliana	2e-109	343	339	46.61
PP00019G01110	Physcomitrella patens	2e-109	343	332	48.19
CV00G12800	Coccomyxa subellipsoidea C-169	3e-109	339	395	42.53
MP16G01280	Micromonas pusilla strain CCMP1545	4e-109	336	412	40.05
OS07G03260	Oryza sativa	2e-108	340	426	41.08
PP00015G00680	Physcomitrella patens	3e-108	340	362	45.30
ATR_00065G00270	Amborella trichopoda	4e-108	340	341	47.51
AP00G21430	Auxenochlorella protothecoides	1e-107	337	393	42.75
AT3G07330	Arabidopsis thaliana	2e-107	338	428	40.65
OS01G56130	Oryza sativa	9e-107	336	426	42.72
OM_17G00960	Ostreococcus mediterraneus	1e-106	333	404	38.61
AT4G07960	Arabidopsis thaliana	7e-106	334	425	41.18
PP00164G00010	Physcomitrella patens	1e-105	333	349	46.13
OS05G43530	Oryza sativa	1e-104	331	427	42.39
HE0000G41170	Helicosporidium sp.	3e-104	328	402	41.04
CV00G12810	Coccomyxa subellipsoidea C-169	1e-103	320	350	44.57
ATR_00013G02120	Amborella trichopoda	9e-102	322	336	45.54
OS09G26770	Oryza sativa	1e-101	317	350	48.00
OT_17G00830	Ostreococcus tauri	1e-101	318	407	38.57
OL16G00900	Ostreococcus lucimarinus	1e-99	313	406	40.15
ORCC809_16G01780	Ostreococcus sp RCC809	6e-97	307	402	40.30
CNC64A_025G01180	Chlorella sp NC64A	1e-90	293	401	38.90
CR06G04470	Chlamydomonas reinhardtii	3e-62	218	400	35.75
VC00G68920	Volvox carteri	7e-61	213	401	34.41
emh181270	Emiliania huxleyi	1e-40	153	230	40.43
emh488170	Emiliania huxleyi	1e-40	153	230	40.43
OM_13G00450	Ostreococcus mediterraneus	1e-18	92.0	235	29.79
ORCC809_20G02860	Ostreococcus sp RCC809	3e-17	87.8	236	29.66
OT_14G02980	Ostreococcus tauri	4e-17	87.4	251	29.48
OL20G02910	Ostreococcus lucimarinus	4e-16	84.3	238	28.15
ES0097G00210	Ectocarpus siliculosus	5e-12	72.0	169	27.81
PP00435G00020	Physcomitrella patens	6e-12	67.0	85	42.35
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	8e-12	71.2	233	27.90
ES0200G00060	Ectocarpus siliculosus	1e-11	70.9	296	25.68
ES0097G00300	Ectocarpus siliculosus	4e-10	65.9	213	25.35
DDB_G0269124	Dictyostelium discoideum	7e-10	65.1	172	28.49
CV00G83580	Coccomyxa subellipsoidea C-169	7e-10	65.1	210	26.19
emh647580	Emiliania huxleyi	8e-10	64.7	171	28.07
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	2e-09	63.9	314	23.57
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	5e-09	62.0	242	26.86
AC00G28500	Asterochloris sp. Cgr-DA1pho v2.0	1e-08	61.2	269	23.42
CV00G28250	Coccomyxa subellipsoidea C-169	2e-08	60.5	240	24.58
AC00G02440	Asterochloris sp. Cgr-DA1pho v2.0	2e-08	60.1	200	27.50
CV00G40830	Coccomyxa subellipsoidea C-169	4e-08	59.3	230	25.65
PI00G46760	Picochlorum sp. SENEW3 (SE3)	1e-07	58.2	225	24.89
RCC4223.10g01020	Picochlorum_RCC4223	1e-07	58.2	225	25.33
CV00G13860	Coccomyxa subellipsoidea C-169	1e-07	57.8	216	25.46
PP00372G00370	Physcomitrella patens	3e-07	56.6	184	26.63
CV00G01670	Coccomyxa subellipsoidea C-169	5e-07	56.2	309	24.27

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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