Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G14360	Arabidopsis thaliana	0.0	1264	609	100.00
AT3G23300	Arabidopsis thaliana	0.0	1132	614	90.07
AT1G04430	Arabidopsis thaliana	0.0	1035	624	80.45
ATR_00067G00480	Amborella trichopoda	0.0	920	624	71.47
OS10G33720	Oryza sativa	0.0	900	606	72.94
ATR_00174G00180	Amborella trichopoda	0.0	774	628	62.26
OS06G47294	Oryza sativa	0.0	773	526	67.49
AT5G14430	Arabidopsis thaliana	0.0	763	529	67.30
PP00322G00180	Physcomitrella patens	0.0	701	567	59.08
PP00140G00160	Physcomitrella patens	0.0	698	641	54.91
PP00146G00320	Physcomitrella patens	0.0	697	531	61.77
PP00005G01310	Physcomitrella patens	0.0	676	642	53.27
AT5G06050	Arabidopsis thaliana	2e-167	501	527	46.87
OS01G62800	Oryza sativa	2e-166	498	539	46.57
AT2G39750	Arabidopsis thaliana	3e-165	496	505	48.12
ATR_00012G03200	Amborella trichopoda	5e-165	494	531	46.70
AT1G77260	Arabidopsis thaliana	9e-165	493	509	46.76
ATR_00038G00100	Amborella trichopoda	2e-160	478	524	46.95
OS05G31480	Oryza sativa	1e-158	476	523	46.46
AT3G10200	Arabidopsis thaliana	9e-156	468	524	45.23
AT5G04060	Arabidopsis thaliana	5e-154	463	523	45.51
PP00043G00720	Physcomitrella patens	2e-153	461	537	44.32
PP00284G00040	Physcomitrella patens	1e-151	461	560	44.29
ATR_00017G02110	Amborella trichopoda	2e-150	462	530	45.85
PP00336G00390	Physcomitrella patens	4e-150	454	593	41.65
OS06G03750	Oryza sativa	1e-149	452	545	43.12
AT3G51070	Arabidopsis thaliana	4e-149	460	558	43.55
PP00130G00270	Physcomitrella patens	1e-148	449	574	43.21
AT2G45750	Arabidopsis thaliana	1e-148	450	546	44.51
AT2G34300	Arabidopsis thaliana	3e-148	454	524	45.61
PP00235G00190	Physcomitrella patens	1e-147	448	623	41.09
AT5G64030	Arabidopsis thaliana	1e-147	454	535	44.67
PP00099G00640	Physcomitrella patens	4e-147	449	557	42.73
PP00043G00860	Physcomitrella patens	1e-146	445	589	41.60
AT1G29470	Arabidopsis thaliana	2e-146	449	529	45.56
PP00266G00280	Physcomitrella patens	2e-145	442	527	44.40
OS06G01450	Oryza sativa	2e-145	442	547	42.05
AT4G10440	Arabidopsis thaliana	4e-145	441	517	43.71
AT4G19120	Arabidopsis thaliana	4e-145	440	556	42.27
AT4G00740	Arabidopsis thaliana	2e-144	439	594	40.24
PP00114G01210	Physcomitrella patens	2e-143	436	596	41.44
ATR_00018G01150	Amborella trichopoda	3e-143	437	566	40.81
ATR_00066G00170	Amborella trichopoda	3e-143	437	539	43.60
OS04G59590	Oryza sativa	5e-143	437	535	45.79
OS01G66110	Oryza sativa	5e-143	441	567	43.74
OS10G36690	Oryza sativa	2e-142	434	589	41.60
PP00082G00180	Physcomitrella patens	2e-142	441	539	45.83
AT1G33170	Arabidopsis thaliana	4e-142	434	517	42.36
AT1G26850	Arabidopsis thaliana	4e-142	433	564	41.13
OS02G45310	Oryza sativa	5e-142	434	550	41.82
OS06G49860	Oryza sativa	7e-142	442	501	44.91
ATR_00001G01770	Amborella trichopoda	2e-140	438	500	46.00
PP00013G01130	Physcomitrella patens	2e-140	431	538	44.61
OS04G48230	Oryza sativa	2e-140	430	566	41.52
ATR_00010G04230	Amborella trichopoda	3e-140	428	549	42.08
ATR_00048G01750	Amborella trichopoda	7e-140	427	542	41.88
ATR_00069G00720	Amborella trichopoda	8e-139	426	516	43.80
OS03G26200	Oryza sativa	1e-138	424	624	38.94
OS09G24900	Oryza sativa	9e-138	422	513	42.30
PP00009G01990	Physcomitrella patens	3e-137	424	535	43.18
AT1G31850	Arabidopsis thaliana	4e-137	420	539	40.07
OS11G08314	Oryza sativa	9e-137	427	504	45.83
OS10G41970	Oryza sativa	2e-136	418	546	41.76
OS05G39520	Oryza sativa	2e-136	420	502	42.83
AT2G40280	Arabidopsis thaliana	2e-136	417	494	44.33
ATR_00069G00610	Amborella trichopoda	4e-135	415	521	41.46
AT2G43200	Arabidopsis thaliana	1e-134	414	539	43.41
PP00156G00060	Physcomitrella patens	1e-134	413	566	41.52
AT4G00750	Arabidopsis thaliana	2e-134	414	541	41.77
OS01G61250	Oryza sativa	7e-134	414	503	42.35
OS04G48140	Oryza sativa	1e-133	410	529	41.59
ATR_00153G00270	Amborella trichopoda	1e-132	410	538	42.01
AT3G56080	Arabidopsis thaliana	2e-131	405	493	43.00
PP00093G00860	Physcomitrella patens	8e-127	394	545	40.92
AT4G18030	Arabidopsis thaliana	2e-126	393	545	38.72
OS11G38860	Oryza sativa	2e-118	373	538	39.22
AT1G78240	Arabidopsis thaliana	1e-112	359	529	35.92
ATR_00038G01580	Amborella trichopoda	5e-109	350	550	35.45
ATR_00110G01240	Amborella trichopoda	5e-108	345	538	34.01
OS02G51860	Oryza sativa	6e-107	343	561	35.12
AT1G13860	Arabidopsis thaliana	2e-103	332	551	33.39
OS03G56380	Oryza sativa	3e-101	330	495	38.79
AT1G19430	Arabidopsis thaliana	1e-100	328	539	35.99
OS01G67360	Oryza sativa	3e-99	322	468	40.17
PP00042G00110	Physcomitrella patens	5e-98	314	425	38.82
AT2G03480	Arabidopsis thaliana	4e-96	313	540	33.89
ATR_00149G00840	Amborella trichopoda	6e-95	310	500	35.80
PP00410G00030	Physcomitrella patens	6e-79	268	527	32.83
OS04G14150	Oryza sativa	8e-48	172	221	44.34
OS12G07840	Oryza sativa	5e-44	172	173	51.45
ATR_00059G00190	Amborella trichopoda	5e-41	152	200	42.00
ATR_00059G00180	Amborella trichopoda	2e-39	154	297	32.32
PP00033G01730	Physcomitrella patens	1e-35	139	244	35.25
OS12G07870	Oryza sativa	7e-27	112	96	56.25
OS10G37770	Oryza sativa	2e-16	85.9	189	31.22

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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