Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G07960	Arabidopsis thaliana	0.0	1444	700	100.00
ATR_00065G00270	Amborella trichopoda	0.0	1028	722	73.55
AT4G31590	Arabidopsis thaliana	0.0	928	718	65.74
OS07G03260	Oryza sativa	0.0	915	688	70.78
OS05G43530	Oryza sativa	0.0	911	682	72.14
AT2G24630	Arabidopsis thaliana	0.0	902	716	64.39
OS01G56130	Oryza sativa	0.0	899	691	71.35
ATR_00019G01680	Amborella trichopoda	0.0	897	710	64.51
PP00162G00740	Physcomitrella patens	0.0	883	723	63.90
PP00373G00150	Physcomitrella patens	0.0	870	723	62.93
PP00019G01110	Physcomitrella patens	0.0	865	723	62.93
ATR_00013G02120	Amborella trichopoda	0.0	862	681	65.49
PP00015G00680	Physcomitrella patens	0.0	857	724	61.74
PP00224G00220	Physcomitrella patens	0.0	849	704	62.36
AT3G28180	Arabidopsis thaliana	0.0	845	697	62.98
OS08G15420	Oryza sativa	0.0	847	754	60.21
PP00164G00010	Physcomitrella patens	0.0	844	719	62.59
PP00089G01080	Physcomitrella patens	0.0	838	719	62.59
AT3G07330	Arabidopsis thaliana	0.0	835	699	60.66
OS09G25900	Oryza sativa	0.0	808	700	63.71
OS03G56060	Oryza sativa	0.0	781	461	84.16
PP00065G00990	Physcomitrella patens	7e-144	438	527	42.69
PP00036G00370	Physcomitrella patens	1e-143	438	530	41.51
PP00036G01070	Physcomitrella patens	5e-143	436	546	42.12
OS02G09930	Oryza sativa	4e-141	431	532	41.54
ATR_00040G02570	Amborella trichopoda	5e-141	431	531	42.75
AT5G22740	Arabidopsis thaliana	8e-137	420	533	41.46
OS06G42020	Oryza sativa	6e-135	415	535	39.63
AT1G23480	Arabidopsis thaliana	7e-135	416	528	41.29
AT5G03760	Arabidopsis thaliana	2e-134	414	532	40.98
AT4G13410	Arabidopsis thaliana	7e-132	407	528	39.39
AT2G35650	Arabidopsis thaliana	2e-131	407	516	40.70
OS08G33740	Oryza sativa	3e-129	402	486	40.95
OS03G07350	Oryza sativa	3e-128	398	464	42.03
AT5G16190	Arabidopsis thaliana	4e-128	394	467	42.83
AT1G24070	Arabidopsis thaliana	2e-127	396	533	39.21
OS07G43710	Oryza sativa	3e-127	397	536	39.37
OM_17G00960	Ostreococcus mediterraneus	1e-125	393	524	40.27
OS03G26044	Oryza sativa	2e-125	392	538	39.41
OS02G51060	Oryza sativa	2e-125	390	530	38.30
MP16G01280	Micromonas pusilla strain CCMP1545	2e-124	386	482	41.70
AT3G56000	Arabidopsis thaliana	3e-123	385	532	40.23
OS10G26630	Oryza sativa	7e-121	379	462	42.42
MRCC299_10G04230	Micromonas sp RCC299	1e-120	376	479	41.96
OT_17G00830	Ostreococcus tauri	9e-118	370	434	43.09
BPRRCC1105_06G01240	Bathycoccus prasinos	5e-114	364	551	36.30
PI00G51280	Picochlorum sp. SENEW3 (SE3)	6e-114	363	512	37.70
RCC4223.04g03450	Picochlorum_RCC4223	1e-111	358	521	36.47
AP00G21430	Auxenochlorella protothecoides	2e-111	357	485	39.79
CV00G12800	Coccomyxa subellipsoidea C-169	3e-110	352	476	37.82
AT4G16590	Arabidopsis thaliana	4e-110	346	417	41.25
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	5e-110	350	475	37.26
OL16G00900	Ostreococcus lucimarinus	7e-110	349	519	38.54
ATR_00072G01360	Amborella trichopoda	6e-109	340	309	51.46
HE0000G41170	Helicosporidium sp.	6e-108	347	455	39.56
OS06G12460	Oryza sativa	1e-106	344	516	37.79
CV00G12810	Coccomyxa subellipsoidea C-169	3e-106	337	460	39.78
ORCC809_16G01780	Ostreococcus sp RCC809	3e-104	336	520	37.31
CNC64A_025G01180	Chlorella sp NC64A	7e-90	300	507	34.71
VC00G68920	Volvox carteri	8e-72	250	376	38.03
CR06G04470	Chlamydomonas reinhardtii	4e-69	244	372	37.37
OS09G26770	Oryza sativa	2e-55	202	380	33.42
emh181270	Emiliania huxleyi	1e-48	179	304	37.50
emh488170	Emiliania huxleyi	1e-48	179	304	37.50
OM_13G00450	Ostreococcus mediterraneus	9e-28	124	309	30.74
ATR_00067G00360	Amborella trichopoda	1e-27	113	122	61.48
OT_14G02980	Ostreococcus tauri	1e-25	116	246	29.67
OL20G02910	Ostreococcus lucimarinus	1e-24	113	250	30.40
OS11G13650	Oryza sativa	1e-24	107	253	34.39
ORCC809_20G02860	Ostreococcus sp RCC809	9e-24	110	248	30.24
ES0097G00210	Ectocarpus siliculosus	1e-19	98.2	304	30.26
Naga_100049g27	Nannochloropsis gaditana	9e-19	94.7	256	30.08
ES0097G00300	Ectocarpus siliculosus	1e-18	95.1	307	29.32
DDB_G0269124	Dictyostelium discoideum	9e-17	89.0	209	31.10
ES0200G00060	Ectocarpus siliculosus	7e-16	85.9	245	31.43
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	9e-13	75.9	252	27.78
PP00372G00370	Physcomitrella patens	1e-12	75.1	258	27.91
Naga_100079g22	Nannochloropsis gaditana	2e-12	74.3	271	26.94
CV00G13860	Coccomyxa subellipsoidea C-169	4e-12	73.9	250	26.00
CV00G28250	Coccomyxa subellipsoidea C-169	4e-12	73.9	360	24.44
OS10G25740	Oryza sativa	4e-12	68.9	80	47.50
ES0185G00090	Ectocarpus siliculosus	5e-12	73.6	285	26.32
CV00G83580	Coccomyxa subellipsoidea C-169	5e-12	73.6	265	28.68
PI00G60790	Picochlorum sp. SENEW3 (SE3)	9e-12	72.8	296	22.30
ES0097G00120	Ectocarpus siliculosus	2e-11	71.6	206	31.55
AP00G07320	Auxenochlorella protothecoides	3e-11	71.2	373	24.66
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	3e-11	70.9	262	28.24
PI00G46760	Picochlorum sp. SENEW3 (SE3)	5e-11	70.5	271	23.99
emh647580	Emiliania huxleyi	7e-11	69.7	329	23.71
AC00G29940	Asterochloris sp. Cgr-DA1pho v2.0	8e-11	69.7	342	25.44
RCC4223.10g01020	Picochlorum_RCC4223	3e-10	67.8	271	23.99
CV00G40830	Coccomyxa subellipsoidea C-169	6e-10	66.6	250	26.40
CV00G01670	Coccomyxa subellipsoidea C-169	9e-10	66.2	299	24.41
AC00G21740	Asterochloris sp. Cgr-DA1pho v2.0	7e-09	63.5	257	26.85
ccr65060	Chondrus crispus	5e-07	57.4	187	26.20
ES0231G00120	Ectocarpus siliculosus	2e-06	55.5	202	25.74
AC00G61190	Asterochloris sp. Cgr-DA1pho v2.0	7e-06	53.5	239	24.27
AC00G02440	Asterochloris sp. Cgr-DA1pho v2.0	9e-06	53.1	151	24.50

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment