Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G01060	Arabidopsis thaliana	8e-50	157	78	100.00
AT2G46410	Arabidopsis thaliana	2e-26	98.6	75	66.67
AT5G53200	Arabidopsis thaliana	1e-25	97.1	77	57.14
AT2G30420	Arabidopsis thaliana	1e-22	89.0	73	52.05
AT2G30432	Arabidopsis thaliana	2e-22	88.2	77	49.35
AT1G01380	Arabidopsis thaliana	2e-22	87.8	77	59.74
AT2G30424	Arabidopsis thaliana	1e-21	86.7	78	48.72
OS01G43180	Oryza sativa	2e-18	78.2	54	62.96
ATR_00147G00460	Amborella trichopoda	3e-13	63.9	44	56.82
ATR_00024G02220	Amborella trichopoda	6e-13	65.5	40	65.00
ATR_00024G02180	Amborella trichopoda	3e-12	64.3	40	65.00
ATR_00024G02190	Amborella trichopoda	3e-12	63.5	40	62.50
ATR_00024G02200	Amborella trichopoda	7e-12	62.8	40	62.50
AT5G52600	Arabidopsis thaliana	9e-12	61.6	39	61.54
ATR_00024G03330	Amborella trichopoda	2e-11	63.2	36	66.67
ATR_00057G00970	Amborella trichopoda	2e-11	59.3	44	54.55
ATR_00057G00980	Amborella trichopoda	3e-11	58.9	50	52.00
ATR_00068G00470	Amborella trichopoda	3e-11	61.6	40	60.00
ATR_00068G00450	Amborella trichopoda	3e-11	61.6	40	60.00
ATR_00024G03250	Amborella trichopoda	4e-11	59.3	40	60.00
ATR_00068G00480	Amborella trichopoda	6e-11	60.8	40	57.50
AT3G13540	Arabidopsis thaliana	7e-11	59.7	39	58.97
AT3G27920	Arabidopsis thaliana	8e-11	59.3	40	52.50
AT5G14750	Arabidopsis thaliana	9e-11	58.9	40	52.50
AT1G66370	Arabidopsis thaliana	9e-11	59.3	39	56.41
ATR_00030G00920	Amborella trichopoda	1e-10	60.1	40	57.50
AT5G40330	Arabidopsis thaliana	1e-10	58.2	40	52.50
ATR_00005G02430	Amborella trichopoda	2e-10	58.9	40	52.50
OS01G50110	Oryza sativa	3e-10	58.5	39	56.41
OS03G29614	Oryza sativa	4e-10	58.5	40	57.50
AT5G35550	Arabidopsis thaliana	6e-10	57.0	40	57.50
AT1G71030	Arabidopsis thaliana	8e-10	56.2	40	52.50
ATR_00055G00190	Amborella trichopoda	1e-09	55.8	40	50.00
PP00006G01980	Physcomitrella patens	2e-09	57.0	38	60.53
ATR_00139G00140	Amborella trichopoda	2e-09	56.2	40	50.00
AT1G22640	Arabidopsis thaliana	2e-09	55.8	40	50.00
AT4G38620	Arabidopsis thaliana	2e-09	56.2	40	50.00
OS09G36730	Oryza sativa	2e-09	55.8	40	50.00
OS12G07640	Oryza sativa	2e-09	55.8	40	50.00
ATR_00068G00730	Amborella trichopoda	3e-09	55.5	39	56.41
PP00061G00840	Physcomitrella patens	6e-09	55.1	40	52.50
OS08G43550	Oryza sativa	7e-09	54.3	40	47.50
OS05G35500	Oryza sativa	9e-09	53.9	40	47.50
OS03G18480	Oryza sativa	1e-08	54.3	43	44.19
AT4G09460	Arabidopsis thaliana	1e-08	53.1	40	45.00
AT2G47460	Arabidopsis thaliana	2e-08	54.3	40	52.50
PP00371G00030	Physcomitrella patens	3e-08	52.8	40	52.50
OS06G10350	Oryza sativa	3e-08	52.8	36	55.56
OS01G36460	Oryza sativa	3e-08	53.1	40	50.00
AT2G16720	Arabidopsis thaliana	3e-08	52.8	40	45.00
AT5G12870	Arabidopsis thaliana	4e-08	52.4	38	55.26
OS01G19970	Oryza sativa	5e-08	52.4	40	50.00
AT1G35515	Arabidopsis thaliana	5e-08	51.2	40	45.00
OS01G18240	Oryza sativa	6e-08	52.8	39	53.85
AT4G34990	Arabidopsis thaliana	6e-08	52.0	40	50.00
OS01G65370	Oryza sativa	6e-08	52.0	40	42.50
OS05G46610	Oryza sativa	7e-08	52.0	40	50.00
OS04G43680	Oryza sativa	7e-08	51.6	40	52.50
AT3G08500	Arabidopsis thaliana	8e-08	52.0	39	51.28
OS12G33070	Oryza sativa	8e-08	52.4	39	51.28
ATR_00032G00360	Amborella trichopoda	1e-07	51.2	40	52.50
PP00133G00530	Physcomitrella patens	2e-07	51.2	38	52.63
AT5G49330	Arabidopsis thaliana	2e-07	50.8	40	45.00
AT1G18960	Arabidopsis thaliana	2e-07	50.4	43	44.19
OS02G41510	Oryza sativa	3e-07	50.1	40	50.00
OS01G50720	Oryza sativa	3e-07	50.4	40	47.50
OS01G51260	Oryza sativa	3e-07	50.1	40	45.00
OS05G04820	Oryza sativa	4e-07	50.1	38	52.63
AT3G23250	Arabidopsis thaliana	4e-07	49.7	40	45.00
AT3G53200	Arabidopsis thaliana	7e-07	48.5	39	51.28
AT1G09540	Arabidopsis thaliana	8e-07	49.3	39	48.72
AT3G02940	Arabidopsis thaliana	9e-07	48.9	40	45.00
AT1G57560	Arabidopsis thaliana	1e-06	48.9	39	46.15
ATR_00022G03900	Amborella trichopoda	1e-06	48.5	39	48.72
OS10G33810	Oryza sativa	1e-06	48.1	40	47.50
OS02G49986	Oryza sativa	1e-06	48.1	39	51.28
AT1G06180	Arabidopsis thaliana	1e-06	47.8	40	45.00
AT3G62610	Arabidopsis thaliana	2e-06	48.5	40	45.00
OS08G37970	Oryza sativa	2e-06	48.1	38	47.37
OS06G11780	Oryza sativa	2e-06	48.1	40	45.00
ATR_00045G01540	Amborella trichopoda	2e-06	48.1	39	43.59
AT3G01530	Arabidopsis thaliana	2e-06	46.6	43	44.19
PP00295G00270	Physcomitrella patens	3e-06	48.1	39	48.72
AT5G26660	Arabidopsis thaliana	3e-06	47.8	38	52.63
AT4G17785	Arabidopsis thaliana	3e-06	47.8	39	46.15
AT5G16770	Arabidopsis thaliana	3e-06	47.4	40	45.00
AT1G63910	Arabidopsis thaliana	4e-06	47.4	39	48.72
ATR_00003G04480	Amborella trichopoda	4e-06	47.0	38	44.74
AT4G01680	Arabidopsis thaliana	4e-06	47.0	38	47.37
OS08G05520	Oryza sativa	5e-06	47.0	38	47.37
PP00204G00090	Physcomitrella patens	5e-06	47.4	40	45.00
AT1G16490	Arabidopsis thaliana	5e-06	46.6	40	45.00
AT4G21440	Arabidopsis thaliana	6e-06	46.6	38	47.37
OS03G27090	Oryza sativa	7e-06	46.2	40	42.50
OS07G37210	Oryza sativa	7e-06	46.6	38	44.74
ATR_00133G00300	Amborella trichopoda	7e-06	46.6	41	43.90
AT5G06100	Arabidopsis thaliana	7e-06	46.6	39	46.15
AT4G12350	Arabidopsis thaliana	7e-06	46.2	39	51.28
PP00141G00230	Physcomitrella patens	8e-06	46.6	40	45.00
PP00078G00790	Physcomitrella patens	9e-06	46.2	39	46.15
AT5G65230	Arabidopsis thaliana	9e-06	45.8	38	44.74
PP00024G00140	Physcomitrella patens	1e-05	46.6	39	46.15

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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