Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT3G56000	Arabidopsis thaliana	0.0	1105	536	100.00
AT1G23480	Arabidopsis thaliana	0.0	739	528	66.86
ATR_00040G02570	Amborella trichopoda	0.0	671	527	59.96
AT4G13410	Arabidopsis thaliana	0.0	657	518	58.11
AT5G03760	Arabidopsis thaliana	0.0	651	527	59.58
AT1G24070	Arabidopsis thaliana	0.0	648	500	60.40
AT5G22740	Arabidopsis thaliana	0.0	634	521	56.81
OS06G42020	Oryza sativa	0.0	627	518	57.34
OS02G09930	Oryza sativa	0.0	624	510	57.25
AT2G35650	Arabidopsis thaliana	0.0	618	507	57.79
PP00065G00990	Physcomitrella patens	0.0	615	512	57.03
PP00036G01070	Physcomitrella patens	0.0	612	513	56.73
PP00036G00370	Physcomitrella patens	0.0	611	512	56.84
AT5G16190	Arabidopsis thaliana	0.0	588	448	61.61
OS03G07350	Oryza sativa	0.0	570	516	53.49
OS08G33740	Oryza sativa	0.0	538	539	48.42
OS02G51060	Oryza sativa	0.0	530	506	50.40
OS10G26630	Oryza sativa	3e-180	525	507	52.27
AT4G16590	Arabidopsis thaliana	4e-173	502	394	59.14
OS07G43710	Oryza sativa	2e-161	479	496	47.38
OS03G26044	Oryza sativa	3e-159	473	505	47.33
OS06G12460	Oryza sativa	1e-151	455	386	55.18
ATR_00072G01360	Amborella trichopoda	7e-149	437	317	64.35
PP00019G01110	Physcomitrella patens	8e-132	406	435	46.90
PP00373G00150	Physcomitrella patens	2e-130	403	435	45.06
PP00224G00220	Physcomitrella patens	2e-129	400	542	39.67
PP00162G00740	Physcomitrella patens	1e-128	398	434	45.39
AT4G31590	Arabidopsis thaliana	5e-127	394	434	45.85
AT2G24630	Arabidopsis thaliana	1e-126	393	434	45.85
ATR_00019G01680	Amborella trichopoda	2e-126	393	434	46.54
AT3G07330	Arabidopsis thaliana	7e-126	390	534	40.26
OS03G56060	Oryza sativa	8e-126	383	367	50.41
PP00089G01080	Physcomitrella patens	1e-125	390	542	38.93
AT3G28180	Arabidopsis thaliana	5e-125	388	434	45.16
PP00015G00680	Physcomitrella patens	6e-125	389	434	45.16
OS01G56130	Oryza sativa	4e-124	387	532	41.54
ATR_00065G00270	Amborella trichopoda	8e-124	386	436	44.95
OS09G25900	Oryza sativa	9e-124	385	435	45.06
OS08G15420	Oryza sativa	1e-122	384	438	44.52
OS07G03260	Oryza sativa	3e-122	381	437	44.39
OS05G43530	Oryza sativa	2e-121	379	528	40.34
PP00164G00010	Physcomitrella patens	4e-121	379	434	44.70
ATR_00013G02120	Amborella trichopoda	6e-116	364	449	42.54
MP16G01280	Micromonas pusilla strain CCMP1545	1e-115	358	485	38.76
AT4G07960	Arabidopsis thaliana	6e-115	363	532	40.23
BPRRCC1105_06G01240	Bathycoccus prasinos	8e-115	360	519	37.19
PI00G51280	Picochlorum sp. SENEW3 (SE3)	1e-114	360	498	37.95
MRCC299_10G04230	Micromonas sp RCC299	2e-113	352	444	39.64
RCC4223.04g03450	Picochlorum_RCC4223	2e-112	355	506	37.55
OM_17G00960	Ostreococcus mediterraneus	1e-111	351	521	35.89
AC00G27820	Asterochloris sp. Cgr-DA1pho v2.0	6e-111	347	503	37.77
CV00G12800	Coccomyxa subellipsoidea C-169	2e-110	347	497	37.42
AP00G21430	Auxenochlorella protothecoides	2e-106	338	445	39.10
CV00G12810	Coccomyxa subellipsoidea C-169	4e-105	329	371	43.13
HE0000G41170	Helicosporidium sp.	5e-102	327	499	35.27
OT_17G00830	Ostreococcus tauri	9e-101	321	511	34.05
OL16G00900	Ostreococcus lucimarinus	6e-98	313	519	34.87
ORCC809_16G01780	Ostreococcus sp RCC809	9e-95	306	512	33.98
CNC64A_025G01180	Chlorella sp NC64A	3e-94	307	503	35.19
OS09G26770	Oryza sativa	1e-85	280	358	45.25
CR06G04470	Chlamydomonas reinhardtii	2e-66	233	368	35.87
VC00G68920	Volvox carteri	5e-66	230	370	34.86
emh181270	Emiliania huxleyi	1e-50	182	268	39.55
emh488170	Emiliania huxleyi	1e-50	182	268	39.55
ORCC809_20G02860	Ostreococcus sp RCC809	1e-28	124	273	30.04
OM_13G00450	Ostreococcus mediterraneus	8e-28	122	271	29.89
OL20G02910	Ostreococcus lucimarinus	6e-24	110	247	29.55
OT_14G02980	Ostreococcus tauri	2e-21	102	296	26.01
PP00372G00370	Physcomitrella patens	7e-16	84.7	281	26.33
PI00G46760	Picochlorum sp. SENEW3 (SE3)	5e-11	69.7	248	26.21
emh647580	Emiliania huxleyi	1e-10	68.6	261	25.67
RCC4223.10g01020	Picochlorum_RCC4223	2e-10	67.8	248	25.81
AC00G21830	Asterochloris sp. Cgr-DA1pho v2.0	1e-09	64.7	258	26.74
AC00G66050	Asterochloris sp. Cgr-DA1pho v2.0	2e-09	64.3	348	22.41
Naga_100049g27	Nannochloropsis gaditana	3e-09	63.5	259	23.94
PI00G60790	Picochlorum sp. SENEW3 (SE3)	4e-08	60.5	275	24.00
ES0097G00300	Ectocarpus siliculosus	1e-07	58.5	164	29.88
ES0200G00060	Ectocarpus siliculosus	1e-07	58.5	257	26.46
ES0097G00210	Ectocarpus siliculosus	2e-07	58.2	249	26.10
CV00G28250	Coccomyxa subellipsoidea C-169	2e-07	58.5	311	21.86
PP00435G00020	Physcomitrella patens	2e-07	54.3	79	34.18
DDB_G0269124	Dictyostelium discoideum	3e-07	57.8	174	27.59
CV00G83580	Coccomyxa subellipsoidea C-169	3e-07	57.4	379	24.27
CV00G01670	Coccomyxa subellipsoidea C-169	4e-07	57.0	410	22.68
Naga_100079g22	Nannochloropsis gaditana	5e-07	56.6	283	22.26
ccr13740	Chondrus crispus	5e-07	56.6	253	22.92
CV00G13860	Coccomyxa subellipsoidea C-169	2e-06	55.1	243	24.69
ccr65060	Chondrus crispus	2e-06	55.1	207	25.12
ES0185G00090	Ectocarpus siliculosus	4e-06	53.9	286	23.78
AC00G02440	Asterochloris sp. Cgr-DA1pho v2.0	4e-06	53.9	173	26.59

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
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