Interactive Phylogenetics Module

Gene Id
AT3G54140

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism E-value Bitscore Alignment Length Identity Percentage
AT3G54140 Arabidopsis thaliana 0.0 1185 571 100.00
AT5G01180 Arabidopsis thaliana 0.0 912 568 73.94
ATR_00029G03190 Amborella trichopoda 0.0 831 567 71.43
ATR_00029G03220 Amborella trichopoda 0.0 811 567 67.72
OS01G04950 Oryza sativa 0.0 807 562 67.79
OS03G51050 Oryza sativa 0.0 743 561 62.57
AT2G02040 Arabidopsis thaliana 0.0 742 567 61.02
PP00114G00050 Physcomitrella patens 0.0 741 564 63.65
OS07G01070 Oryza sativa 0.0 726 563 62.88
ATR_00024G00950 Amborella trichopoda 0.0 723 567 61.02
OS03G13240 Oryza sativa 0.0 704 567 57.85
AT1G62200 Arabidopsis thaliana 0.0 680 562 56.76
OS03G13250 Oryza sativa 0.0 638 566 53.71
ATR_00024G00980 Amborella trichopoda 0.0 634 567 56.44
AT2G02020 Arabidopsis thaliana 0.0 615 566 52.65
ATR_00024G00990 Amborella trichopoda 0.0 608 566 54.95
OS01G67630 Oryza sativa 0.0 589 558 53.76
PP00173G00410 Physcomitrella patens 0.0 588 565 50.09
PP00171G00030 Physcomitrella patens 0.0 569 530 51.70
OS03G13274 Oryza sativa 0.0 566 561 50.27
PP00014G00620 Physcomitrella patens 0.0 566 587 46.51
PP00075G00110 Physcomitrella patens 0.0 554 576 48.09
OS10G02100 Oryza sativa 0.0 531 564 47.87
PP00389G00030 Physcomitrella patens 0.0 533 569 45.17
PP00298G00140 Physcomitrella patens 0.0 531 576 44.97
OS10G02260 Oryza sativa 9e-180 527 570 45.96
ATR_00067G01870 Amborella trichopoda 1e-178 525 570 44.74
ATR_00036G01320 Amborella trichopoda 1e-176 520 570 44.74
PP00246G00590 Physcomitrella patens 2e-176 520 576 44.97
PP00133G00360 Physcomitrella patens 7e-176 518 581 46.13
OS03G04570 Oryza sativa 8e-175 515 562 46.26
ATR_00067G01930 Amborella trichopoda 1e-174 514 573 43.63
OS10G02220 Oryza sativa 2e-174 513 560 44.64
ATR_00256G00010 Amborella trichopoda 2e-173 512 571 44.48
OS02G48570 Oryza sativa 2e-173 511 558 46.42
ATR_00149G00300 Amborella trichopoda 9e-172 508 564 45.21
PP00113G00080 Physcomitrella patens 1e-171 509 577 45.23
OS10G33210 Oryza sativa 1e-170 504 572 45.10
AP00G32420 Auxenochlorella protothecoides 2e-170 505 565 44.60
ATR_00120G00460 Amborella trichopoda 4e-170 503 566 45.41
OS10G02210 Oryza sativa 5e-170 502 542 46.86
OS10G02240 Oryza sativa 5e-170 502 568 46.30
OS10G22560 Oryza sativa 3e-167 494 560 45.71
AT1G68570 Arabidopsis thaliana 2e-166 494 556 46.58
AT5G46050 Arabidopsis thaliana 2e-166 493 571 45.01
CNC64A_010G00890 Chlorella sp NC64A 2e-166 493 544 46.51
PP00116G00100 Physcomitrella patens 4e-166 494 569 45.17
CV00G86190 Coccomyxa subellipsoidea C-169 4e-166 494 539 48.98
HE0000G52310 Helicosporidium sp. 3e-165 492 539 45.64
PP00302G00070 Physcomitrella patens 3e-165 493 551 44.65
PP00434G00170 Physcomitrella patens 3e-164 489 566 42.76
AT4G21680 Arabidopsis thaliana 4e-164 488 571 43.26
AT2G40460 Arabidopsis thaliana 1e-162 483 566 43.29
OS06G49220 Oryza sativa 4e-162 482 564 44.50
OS06G49250 Oryza sativa 4e-161 478 536 45.52
AT5G46040 Arabidopsis thaliana 5e-161 479 574 44.08
ATR_00054G00270 Amborella trichopoda 9e-161 478 576 43.06
OS10G33170 Oryza sativa 2e-160 478 566 44.17
OS10G02080 Oryza sativa 3e-160 475 532 46.99
OS07G41250 Oryza sativa 1e-159 479 552 43.30
PP00071G00970 Physcomitrella patens 2e-158 477 552 45.47
PP00400G00020 Physcomitrella patens 3e-158 471 535 44.49
AT1G32450 Arabidopsis thaliana 1e-157 472 577 42.29
ATR_00104G00420 Amborella trichopoda 1e-156 468 563 41.56
PI00G42080 Picochlorum sp. SENEW3 (SE3) 6e-156 470 555 45.05
OS04G50940 Oryza sativa 4e-155 464 556 42.81
AT5G19640 Arabidopsis thaliana 6e-154 462 541 44.18
HE0000G08520 Helicosporidium sp. 9e-154 462 524 44.85
OS10G42870 Oryza sativa 1e-153 460 550 42.91
ATR_00186G00140 Amborella trichopoda 3e-153 459 552 44.75
OS05G33960 Oryza sativa 2e-151 456 574 41.64
ATR_00156G00390 Amborella trichopoda 3e-151 454 558 43.37
ATR_00086G00940 Amborella trichopoda 4e-151 454 568 42.78
OS04G50950 Oryza sativa 7e-151 454 551 41.74
AT1G12110 Arabidopsis thaliana 2e-150 452 558 43.91
OS10G02340 Oryza sativa 2e-150 451 547 45.52
ATR_00002G04270 Amborella trichopoda 2e-149 450 557 40.57
AT3G53960 Arabidopsis thaliana 2e-149 450 565 40.88
OS02G46460 Oryza sativa 3e-149 450 567 43.74
OS02G47090 Oryza sativa 1e-148 447 567 42.50
OS08G05910 Oryza sativa 2e-148 448 567 42.68
AT2G37900 Arabidopsis thaliana 1e-147 444 563 40.67
AP00G52100 Auxenochlorella protothecoides 1e-146 442 522 44.64
ATR_00165G00370 Amborella trichopoda 1e-146 443 577 41.94
RCC4223.05g02060 Picochlorum_RCC4223 2e-145 443 555 44.32
PP00298G00190 Physcomitrella patens 3e-145 439 579 41.28
OS10G40600 Oryza sativa 9e-145 438 562 40.04
OS05G34030 Oryza sativa 2e-144 438 557 40.57
OS03G48180 Oryza sativa 2e-144 437 582 39.35
ATR_00016G00080 Amborella trichopoda 7e-144 438 571 40.81
OS05G34010 Oryza sativa 8e-144 436 571 40.46
AT3G54450 Arabidopsis thaliana 2e-143 433 551 39.02
AT5G13400 Arabidopsis thaliana 1e-142 434 565 40.35
AT2G26690 Arabidopsis thaliana 2e-142 431 571 41.51
OS06G15370 Oryza sativa 4e-142 431 559 41.50
CV00G87420 Coccomyxa subellipsoidea C-169 8e-141 428 558 42.83
AC00G76010 Asterochloris sp. Cgr-DA1pho v2.0 9e-141 429 579 40.59
ATR_00022G01870 Amborella trichopoda 1e-140 427 562 42.17
PI00G49640 Picochlorum sp. SENEW3 (SE3) 1e-139 426 548 43.25
ATR_00019G00590 Amborella trichopoda 1e-139 423 546 41.21
RCC4223.18g01160 Picochlorum_RCC4223 1e-137 421 546 42.12
OS03G60850 Oryza sativa 1e-136 416 558 39.25
AT1G59740 Arabidopsis thaliana 7e-136 415 556 39.75
AP00G65500 Auxenochlorella protothecoides 7e-136 415 570 40.88
AT1G69870 Arabidopsis thaliana 3e-135 414 549 40.62
AT1G22540 Arabidopsis thaliana 8e-135 411 557 40.39
ATR_00002G04300 Amborella trichopoda 3e-134 410 542 39.85
AT1G22550 Arabidopsis thaliana 4e-133 407 577 39.69
OS06G21900 Oryza sativa 6e-133 409 568 39.26
OS10G42900 Oryza sativa 2e-132 405 549 38.98
OS01G37590 Oryza sativa 3e-131 403 556 42.09
AT1G72140 Arabidopsis thaliana 5e-131 401 563 37.12
AT1G72125 Arabidopsis thaliana 9e-131 400 568 40.67
OS03G01290 Oryza sativa 1e-130 401 556 39.39
AT3G21670 Arabidopsis thaliana 2e-130 400 562 40.39
OS01G65100 Oryza sativa 6e-129 395 565 37.35
AT1G22570 Arabidopsis thaliana 2e-128 395 568 40.49
VC00G30280 Volvox carteri 8e-128 396 574 40.07
ATR_00067G01530 Amborella trichopoda 8e-128 390 463 42.55
ATR_00169G00300 Amborella trichopoda 6e-127 390 544 40.07
AT1G72130 Arabidopsis thaliana 6e-127 390 563 37.12
AT1G33440 Arabidopsis thaliana 8e-127 392 560 37.86
OS01G68510 Oryza sativa 4e-126 390 550 37.64
PP00072G00360 Physcomitrella patens 4e-126 392 581 36.32
ATR_00088G00540 Amborella trichopoda 1e-125 385 465 44.52
AT1G72120 Arabidopsis thaliana 3e-125 386 567 39.86
OS06G49240 Oryza sativa 9e-125 381 437 42.56
AT1G27080 Arabidopsis thaliana 1e-124 385 554 39.17
AT1G69850 Arabidopsis thaliana 2e-124 385 595 37.65
OS01G65110 Oryza sativa 3e-124 383 559 36.85
ATR_00036G01380 Amborella trichopoda 3e-123 378 444 42.79
PP00143G00670 Physcomitrella patens 1e-122 387 588 37.76
ATR_00099G01020 Amborella trichopoda 2e-122 380 567 37.21
AT1G27040 Arabidopsis thaliana 4e-122 379 564 38.30
OS01G01360 Oryza sativa 7e-121 377 558 41.40
ATR_00078G00550 Amborella trichopoda 4e-120 374 578 39.10
ATR_00109G00940 Amborella trichopoda 2e-119 372 549 36.61
OS12G44100 Oryza sativa 3e-119 372 546 36.08
AT1G18880 Arabidopsis thaliana 2e-117 367 578 34.78
OS12G44110 Oryza sativa 1e-116 365 544 37.13
OS04G50930 Oryza sativa 3e-116 365 554 37.36
AT1G52190 Arabidopsis thaliana 3e-116 364 578 36.33
OS04G39030 Oryza sativa 9e-116 363 574 40.07
OS01G54515 Oryza sativa 5e-113 353 517 38.88
OS05G35650 Oryza sativa 1e-112 354 562 36.83
OS05G35594 Oryza sativa 8e-112 351 549 34.97
AT3G16180 Arabidopsis thaliana 1e-111 352 566 35.87
OS01G65210 Oryza sativa 2e-108 347 557 33.21
AT5G62730 Arabidopsis thaliana 9e-107 339 589 35.65
AT5G62680 Arabidopsis thaliana 4e-106 338 598 33.95
OS06G38294 Oryza sativa 8e-106 337 581 37.35
OS04G36040 Oryza sativa 4e-104 333 577 34.66
OS05G27010 Oryza sativa 2e-102 325 466 40.34
AT5G28470 Arabidopsis thaliana 4e-102 326 559 33.27
ATR_00045G01590 Amborella trichopoda 7e-102 324 464 38.79
AT1G69860 Arabidopsis thaliana 5e-101 323 551 34.85
AT3G47960 Arabidopsis thaliana 9e-101 325 562 34.34
ATR_00089G01050 Amborella trichopoda 2e-99 319 567 32.63
ATR_00055G01460 Amborella trichopoda 6e-98 314 527 34.16
OS11G23890 Oryza sativa 6e-96 313 558 31.90
ATR_00118G00290 Amborella trichopoda 2e-95 303 399 38.10
OS11G17970 Oryza sativa 9e-95 308 582 32.99
OS11G18044 Oryza sativa 2e-94 307 568 32.39
OS04G56560 Oryza sativa 9e-94 306 593 32.88
OS04G41450 Oryza sativa 2e-92 301 560 34.29
AT5G14940 Arabidopsis thaliana 2e-92 301 565 31.15
OS04G41400 Oryza sativa 8e-92 300 569 33.39
OS01G67640 Oryza sativa 2e-91 300 276 51.81
OS11G12740 Oryza sativa 3e-90 297 581 33.91
AT3G45650 Arabidopsis thaliana 3e-90 295 561 30.30
AT3G25260 Arabidopsis thaliana 8e-90 293 548 32.48
AT3G25280 Arabidopsis thaliana 2e-86 284 540 33.70
OS01G55600 Oryza sativa 1e-85 283 552 32.79
AT3G45680 Arabidopsis thaliana 2e-85 282 563 30.73
OS01G65150 Oryza sativa 7e-85 280 554 33.21
OS01G55610 Oryza sativa 1e-84 281 557 32.32
AT3G45660 Arabidopsis thaliana 5e-84 279 533 31.14
OS12G12934 Oryza sativa 7e-83 276 569 33.39
AT3G45720 Arabidopsis thaliana 1e-81 273 528 31.44
AT3G01350 Arabidopsis thaliana 6e-81 271 564 28.90
AT3G45710 Arabidopsis thaliana 1e-80 270 577 28.94
OS06G13210 Oryza sativa 1e-80 269 565 32.21
AT3G45700 Arabidopsis thaliana 5e-79 265 560 28.75
ATR_00118G00320 Amborella trichopoda 7e-79 258 263 52.09
OS01G65169 Oryza sativa 5e-78 262 564 31.56
ATR_00024G00970 Amborella trichopoda 3e-73 239 272 46.69
OS06G13200 Oryza sativa 3e-73 249 554 31.41
OS05G27304 Oryza sativa 3e-71 245 595 29.75
ATR_00112G00370 Amborella trichopoda 7e-71 238 351 37.61
HE0000G42610 Helicosporidium sp. 1e-70 233 228 50.00
AT3G45690 Arabidopsis thaliana 7e-69 237 555 27.39
OS11G18110 Oryza sativa 1e-68 238 517 29.79
ATR_00070G00600 Amborella trichopoda 6e-66 223 281 40.21
phs97310 Phytophtora sojae 1e-65 230 566 29.51
CR04G03930 Chlamydomonas reinhardtii 2e-65 233 253 48.22
OS01G65140 Oryza sativa 5e-64 219 250 44.00
CNC64A_007G03700 Chlorella sp NC64A 4e-63 221 214 50.47
PP00147G00390 Physcomitrella patens 1e-62 214 207 50.24
ATR_00118G00300 Amborella trichopoda 3e-60 206 257 41.25
Naga_100030g44 Nannochloropsis gaditana 6e-59 214 446 34.98
ATR_00162G00100 Amborella trichopoda 6e-59 204 277 40.07
OS08G41590 Oryza sativa 6e-59 207 452 28.32
ENSG00000139370 Homo sapiens 2e-58 211 560 28.57
OS05G34000 Oryza sativa 9e-57 206 263 40.30
ENSMUSG00000029416 Mus musculus 1e-55 203 576 28.99
ATR_00002G04290 Amborella trichopoda 1e-55 197 315 35.56
PP00069G00140 Physcomitrella patens 3e-55 201 580 26.21
OS04G41410 Oryza sativa 6e-54 196 467 29.55
OS04G59480 Oryza sativa 9e-54 196 243 37.45
DDB_G0272550 Dictyostelium discoideum 2e-52 193 484 28.93
PP00009G01060 Physcomitrella patens 3e-52 192 544 28.12
phs319720 Phytophtora sojae 9e-52 193 581 27.37
phs89090 Phytophtora sojae 3e-51 191 584 26.71
OS01G65190 Oryza sativa 1e-50 190 226 41.15
HE0000G35580 Helicosporidium sp. 5e-49 177 255 41.18
ES0453G00050 Ectocarpus siliculosus 2e-47 178 476 30.25
AT2G38100 Arabidopsis thaliana 1e-46 176 514 28.02
OS01G65200 Oryza sativa 2e-46 172 363 33.88
OS10G05780 Oryza sativa 5e-44 169 243 37.86
ATR_00024G00960 Amborella trichopoda 9e-44 158 121 60.33
PP00004G00090 Physcomitrella patens 1e-43 162 279 36.92
AT5G11570 Arabidopsis thaliana 2e-43 166 249 36.14
ATR_00023G02330 Amborella trichopoda 5e-43 160 260 35.38
OS01G65120 Oryza sativa 9e-43 164 228 38.16
PP00065G01500 Physcomitrella patens 2e-42 164 540 26.85
phs42450 Phytophtora sojae 4e-42 164 573 25.31
FBgn0028491 Drosophila melanogaster 3e-41 163 449 28.95
FC006G04490 Fragilariopsis cylindrus 4e-41 160 537 27.00
ATR_00070G00590 Amborella trichopoda 1e-40 152 226 39.38
ATR_00023G02340 Amborella trichopoda 3e-39 150 279 30.11
FBgn0265575 Drosophila melanogaster 4e-39 156 379 30.61
ENSMUSG00000025557 Mus musculus 5e-39 155 415 27.71
ENSMUSG00000022899 Mus musculus 7e-39 155 411 28.95
ATR_00020G00660 Amborella trichopoda 8e-39 147 242 37.19
ATR_00054G00250 Amborella trichopoda 2e-37 141 202 38.12
ENSG00000163406 Homo sapiens 5e-37 150 397 29.22
WBGene00003877 Caenorhabditis elegans 2e-36 149 410 27.32
AA0009G01620 Aureococcus anophagefferens 4e-36 144 543 24.31
WBGene00003878 Caenorhabditis elegans 5e-36 146 414 29.95
PTI_12G03880 Phaeodactylum tricornutum 1e-34 142 600 24.00
AA0005G00440 Aureococcus anophagefferens 1e-34 139 487 28.13
ATR_00162G00110 Amborella trichopoda 1e-34 133 161 41.61
ATR_00118G00280 Amborella trichopoda 1e-33 130 156 44.87
YKR093W Saccharomyces cerevisiae strain S288C 3e-33 137 515 26.60
DDB_G0272468 Dictyostelium discoideum 5e-33 138 511 26.03
ENSG00000188991 Homo sapiens 6e-33 136 532 25.38
SPBC13A2.04c Schizosaccharomyces pombe 2e-32 135 549 27.14
OS06G49230 Oryza sativa 8e-32 124 106 52.83
WBGene00003876 Caenorhabditis elegans 3e-31 133 444 26.80
DDB_G0267874 Dictyostelium discoideum 4e-31 132 506 23.52
OS05G27050 Oryza sativa 2e-30 120 118 44.07
phs07850 Phytophtora sojae 2e-30 129 579 22.63
FC056G00710 Fragilariopsis cylindrus 6e-30 127 512 25.00
phs255230 Phytophtora sojae 4e-27 119 581 23.24
ATR_00067G01540 Amborella trichopoda 4e-25 107 194 31.96
phs07890 Phytophtora sojae 4e-25 107 174 36.78
TP04G00530 Thalassiosira pseudonana 5e-25 114 506 26.68
OS03G17770 Oryza sativa 2e-24 108 133 43.61
ATR_00109G00960 Amborella trichopoda 2e-23 102 154 37.01
FC011G01070 Fragilariopsis cylindrus 8e-23 106 549 25.32
FC015G01430 Fragilariopsis cylindrus 8e-23 106 518 25.68
ATR_00020G00670 Amborella trichopoda 7e-22 97.8 130 46.92
phs31460 Phytophtora sojae 3e-21 101 593 23.10
TP08G01040 Thalassiosira pseudonana 4e-21 101 524 24.43
OS12G13790 Oryza sativa 4e-21 100 192 35.42
ATR_00096G00160 Amborella trichopoda 1e-19 92.4 84 52.38
phs42430 Phytophtora sojae 2e-19 95.9 448 22.99
gsu136190 Galdieria sulphuraria 2e-19 94.4 154 38.96
emh586030 Emiliania huxleyi 4e-17 88.2 512 24.61
ATR_00088G00530 Amborella trichopoda 7e-17 82.0 90 41.11
phs239650 Phytophtora sojae 7e-17 85.5 207 29.47
OS04G34640 Oryza sativa 8e-17 84.7 98 47.96
ATR_00089G01060 Amborella trichopoda 2e-14 75.5 94 39.36
OS07G21960 Oryza sativa 7e-14 76.6 274 27.01
ATR_00162G00120 Amborella trichopoda 2e-13 72.4 90 42.22
PTI_12G02910 Phaeodactylum tricornutum 4e-13 76.6 216 31.02
FC009G05560 Fragilariopsis cylindrus 1e-12 74.7 248 29.03
emh44980 Emiliania huxleyi 2e-12 73.2 408 24.75
RCC4223.111g00230 Picochlorum_RCC4223 3e-12 73.2 214 29.44
OS02G52060 Oryza sativa 5e-12 70.9 116 32.76
phs31400 Phytophtora sojae 2e-11 70.9 507 22.68
OT_11G01550 Ostreococcus tauri 5e-11 69.3 469 21.54
FBgn0037730 Drosophila melanogaster 6e-11 68.9 163 31.29
ATR_00048G01070 Amborella trichopoda 9e-11 64.3 72 41.67
OS08G41600 Oryza sativa 1e-10 64.3 82 37.80
ES0051G00510 Ectocarpus siliculosus 6e-10 62.8 71 42.25
OS08G31960 Oryza sativa 2e-09 62.4 74 45.95
emh670440 Emiliania huxleyi 5e-09 61.6 162 30.86
OS12G15600 Oryza sativa 1e-06 53.9 129 31.01
OS10G02230 Oryza sativa 2e-06 53.1 57 49.12
FC090G00210 Fragilariopsis cylindrus 2e-06 54.7 162 28.40
OS02G31980 Oryza sativa 3e-06 51.2 84 30.95
BPRRCC1105_13G01850 Bathycoccus prasinos 6e-06 53.1 198 26.77

Amborella trichopoda (56 genes)
Arabidopsis thaliana (53 genes)
Asterochloris sp. Cgr-DA1pho v2.0 (1 genes)
Aureococcus anophagefferens (2 genes)
Auxenochlorella protothecoides (3 genes)
Bathycoccus prasinos (1 genes)
Caenorhabditis elegans (3 genes)
Chlamydomonas reinhardtii (1 genes)
Chlorella sp NC64A (2 genes)
Chondrus crispus (0 genes)
Coccomyxa subellipsoidea C-169 (2 genes)
Cyanidioschyzon merolae (0 genes)
Dictyostelium discoideum (3 genes)
Drosophila melanogaster (3 genes)
Ectocarpus siliculosus (2 genes)
Emiliania huxleyi (3 genes)
Fragilariopsis cylindrus (6 genes)
Galdieria sulphuraria (1 genes)
Helicosporidium sp. (4 genes)
Homo sapiens (3 genes)
Micromonas pusilla strain CCMP1545 (0 genes)
Micromonas sp RCC299 (0 genes)
Mus musculus (3 genes)
Nannochloropsis gaditana (1 genes)
Oryza sativa (93 genes)
Ostreococcus lucimarinus (0 genes)
Ostreococcus mediterraneus (0 genes)
Ostreococcus sp RCC809 (0 genes)
Ostreococcus tauri (1 genes)
Paramecium tetraurelia (0 genes)
Phaeodactylum tricornutum (2 genes)
Physcomitrella patens (23 genes)
Phytophtora sojae (11 genes)
Picochlorum sp. SENEW3 (SE3) (2 genes)
Picochlorum_RCC4223 (3 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Thalassiosira pseudonana (2 genes)
Volvox carteri (1 genes)

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