Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT3G26744	Arabidopsis thaliana	0.0	1007	495	100.00
AT1G12860	Arabidopsis thaliana	4e-171	497	515	61.36
ATR_00016G01270	Amborella trichopoda	2e-136	412	543	49.54
OS11G32100	Oryza sativa	2e-102	323	304	63.49
OS01G70310	Oryza sativa	5e-97	305	187	77.54
PP00257G00150	Physcomitrella patens	2e-75	253	225	64.00
PP00030G01870	Physcomitrella patens	7e-74	249	303	51.82
PP00051G00900	Physcomitrella patens	1e-72	246	189	68.78
ATR_00096G01030	Amborella trichopoda	2e-51	182	165	62.42
PP00212G00320	Physcomitrella patens	2e-48	176	166	61.45
AT5G65640	Arabidopsis thaliana	5e-35	138	208	45.19
PP00025G01320	Physcomitrella patens	1e-33	137	210	39.52
OS03G04310	Oryza sativa	1e-33	134	202	43.07
PP00159G00160	Physcomitrella patens	2e-32	133	210	38.10
AT5G10570	Arabidopsis thaliana	3e-30	124	208	40.87
OS10G39750	Oryza sativa	2e-28	119	194	45.36
AT2G16910	Arabidopsis thaliana	5e-28	121	182	42.86
ATR_00184G00230	Amborella trichopoda	2e-25	109	194	41.24
PP00182G00030	Physcomitrella patens	2e-25	111	241	31.12
PP00001G02200	Physcomitrella patens	1e-22	102	227	29.96
OS02G02820	Oryza sativa	5e-22	103	219	31.51
PP00090G00870	Physcomitrella patens	2e-20	98.2	247	30.36
ATR_00002G00410	Amborella trichopoda	3e-20	90.1	81	58.02
PP00042G00520	Physcomitrella patens	3e-19	94.0	190	32.11
PP00124G00140	Physcomitrella patens	7e-17	86.7	90	51.11
PP00031G01390	Physcomitrella patens	9e-17	86.3	191	30.89
ATR_00025G00260	Amborella trichopoda	2e-15	83.2	190	33.16
ATR_00100G00190	Amborella trichopoda	2e-15	82.8	47	78.72
PP00412G00220	Physcomitrella patens	4e-15	78.6	200	33.50
AT5G46760	Arabidopsis thaliana	7e-15	81.3	187	31.02
AT5G57150	Arabidopsis thaliana	2e-14	77.4	156	33.97
AT4G17880	Arabidopsis thaliana	3e-14	79.3	187	31.55
PP00074G00250	Physcomitrella patens	3e-14	79.3	190	29.47
PP00003G01120	Physcomitrella patens	3e-14	77.8	102	41.18
PP00167G00680	Physcomitrella patens	6e-14	78.2	154	32.47
PP00194G00660	Physcomitrella patens	7e-14	75.5	257	28.40
ATR_00002G02470	Amborella trichopoda	7e-14	78.2	239	29.71
ATR_00121G00050	Amborella trichopoda	9e-14	77.4	199	30.65
PP00300G00370	Physcomitrella patens	1e-13	75.1	166	32.53
PP00031G02090	Physcomitrella patens	1e-13	74.7	83	46.99
AT4G09820	Arabidopsis thaliana	1e-13	77.0	151	33.77
ATR_00102G00170	Amborella trichopoda	1e-13	74.3	154	33.12
AT2G46510	Arabidopsis thaliana	1e-13	77.0	58	58.62
PP00011G01580	Physcomitrella patens	2e-13	75.9	176	31.25
ATR_00019G04280	Amborella trichopoda	2e-13	73.9	57	61.40
ATR_00102G00240	Amborella trichopoda	3e-13	73.9	139	33.09
ATR_00099G01110	Amborella trichopoda	3e-13	76.3	132	38.64
OS01G39580	Oryza sativa	3e-13	75.1	203	29.56
OS10G42430	Oryza sativa	3e-13	76.3	231	28.14
AT4G00870	Arabidopsis thaliana	4e-13	75.1	79	39.24
OS12G43620	Oryza sativa	5e-13	74.3	154	30.52
AT4G29930	Arabidopsis thaliana	7e-13	72.4	58	53.45
ATR_00021G02190	Amborella trichopoda	8e-13	74.7	67	52.24
PP00033G01110	Physcomitrella patens	9e-13	72.4	166	31.33
PP00275G00480	Physcomitrella patens	9e-13	72.0	156	32.05
AT2G28160	Arabidopsis thaliana	2e-12	72.0	87	39.08
OS01G13460	Oryza sativa	2e-12	73.2	60	53.33
AT1G01260	Arabidopsis thaliana	3e-12	72.8	68	52.94
ATR_00009G02220	Amborella trichopoda	3e-12	72.8	211	27.96
OS03G51580	Oryza sativa	4e-12	71.6	157	28.66
OS01G50940	Oryza sativa	8e-12	71.2	53	60.38
AT1G63650	Arabidopsis thaliana	2e-11	70.5	160	31.25
AT1G32640	Arabidopsis thaliana	2e-11	70.5	58	53.45
OS04G23550	Oryza sativa	2e-11	68.9	188	28.72
OS04G23440	Oryza sativa	2e-11	68.6	202	29.70
OS01G39480	Oryza sativa	3e-11	68.6	181	30.39
PP00072G00020	Physcomitrella patens	3e-11	69.3	78	42.31
ATR_00001G04950	Amborella trichopoda	6e-11	68.2	199	30.15
AT4G37850	Arabidopsis thaliana	7e-11	67.4	174	28.16
PP00105G00740	Physcomitrella patens	8e-11	67.8	226	26.55
PP00074G00230	Physcomitrella patens	9e-11	68.6	54	53.70
OS04G47080	Oryza sativa	1e-10	68.2	60	48.33
ATR_00084G00290	Amborella trichopoda	1e-10	65.1	136	33.09
AT2G31220	Arabidopsis thaliana	1e-10	67.8	178	26.97
OS11G15210	Oryza sativa	1e-10	67.4	159	28.30
AT1G10610	Arabidopsis thaliana	1e-10	67.4	79	43.04
PP00005G01070	Physcomitrella patens	1e-10	68.2	54	53.70
OS04G31290	Oryza sativa	2e-10	66.6	85	36.47
OS08G43070	Oryza sativa	2e-10	65.5	69	47.83
AT4G16430	Arabidopsis thaliana	3e-10	65.9	55	52.73
OS07G36460	Oryza sativa	4e-10	63.9	183	30.05
PP00089G00690	Physcomitrella patens	5e-10	65.5	212	28.77
AT5G41315	Arabidopsis thaliana	5e-10	65.9	159	30.19
AT5G46830	Arabidopsis thaliana	6e-10	65.5	166	31.33
ATR_00100G00440	Amborella trichopoda	7e-10	61.2	47	65.96
ATR_00015G00940	Amborella trichopoda	1e-09	63.5	232	28.02
ATR_00008G01150	Amborella trichopoda	1e-09	62.4	184	28.26
OS10G01530	Oryza sativa	2e-09	62.4	172	25.00
PP00386G00050	Physcomitrella patens	2e-09	63.9	97	38.14
AT1G06170	Arabidopsis thaliana	2e-09	63.5	233	27.04
ATR_00048G01370	Amborella trichopoda	2e-09	63.5	170	32.94
OS03G46860	Oryza sativa	2e-09	63.2	53	43.40
PP00345G00010	Physcomitrella patens	3e-09	61.6	174	29.31
PP00077G00880	Physcomitrella patens	3e-09	62.4	87	45.98
AT4G21330	Arabidopsis thaliana	4e-09	60.5	157	29.94
OS09G34330	Oryza sativa	4e-09	61.6	159	30.82
AT2G31215	Arabidopsis thaliana	4e-09	59.7	124	30.65
OS04G47040	Oryza sativa	4e-09	62.8	162	30.25
AT2G31210	Arabidopsis thaliana	4e-09	62.4	82	42.68
PP00057G00920	Physcomitrella patens	5e-09	62.8	65	49.23
OS03G46790	Oryza sativa	5e-09	61.2	56	42.86
OS04G47059	Oryza sativa	5e-09	61.6	67	44.78
ATR_00021G00510	Amborella trichopoda	6e-09	60.8	161	29.19
ATR_00089G00120	Amborella trichopoda	1e-08	60.8	210	28.57
PP00371G00310	Physcomitrella patens	2e-08	60.1	176	28.41
PP00093G00950	Physcomitrella patens	2e-08	60.8	97	37.11
AT2G22760	Arabidopsis thaliana	2e-08	59.3	194	24.23
AT2G22770	Arabidopsis thaliana	3e-08	59.3	70	38.57
PP00218G00140	Physcomitrella patens	4e-08	58.5	175	29.71
PP00004G00490	Physcomitrella patens	5e-08	59.3	52	53.85
OS12G02020	Oryza sativa	8e-08	55.8	171	27.49
PP00031G00300	Physcomitrella patens	2e-07	58.2	52	51.92
PP00121G00270	Physcomitrella patens	2e-07	56.2	197	26.40
OS06G06900	Oryza sativa	2e-07	56.6	66	39.39
AT3G24140	Arabidopsis thaliana	2e-07	57.0	185	27.03
AT2G22750	Arabidopsis thaliana	3e-07	56.2	144	29.17
OS05G27090	Oryza sativa	3e-07	53.9	160	28.75
PP00038G00650	Physcomitrella patens	4e-07	56.2	235	25.11
PP00130G00030	Physcomitrella patens	4e-07	56.6	61	40.98
OS04G51070	Oryza sativa	4e-07	56.6	159	28.93
ATR_00045G01440	Amborella trichopoda	4e-07	56.6	110	27.27
OS03G12760	Oryza sativa	4e-07	55.8	164	25.61
OS06G50900	Oryza sativa	5e-07	54.3	40	77.50
OS01G39330	Oryza sativa	6e-07	55.8	52	46.15
ATR_00101G01220	Amborella trichopoda	7e-07	54.7	157	32.48
PP00130G00090	Physcomitrella patens	9e-07	55.8	52	50.00
AT4G28815	Arabidopsis thaliana	1e-06	54.7	82	32.93
OS03G56950	Oryza sativa	1e-06	55.1	61	39.34
AT1G22490	Arabidopsis thaliana	1e-06	54.3	161	30.43
OS07G05010	Oryza sativa	2e-06	54.3	86	36.05
OS06G33450	Oryza sativa	2e-06	54.3	111	33.33
ATR_00084G00300	Amborella trichopoda	2e-06	51.6	30	76.67
ATR_00002G00080	Amborella trichopoda	2e-06	53.1	177	25.99
AT2G40200	Arabidopsis thaliana	2e-06	53.1	127	29.92
OS08G37290	Oryza sativa	2e-06	52.4	61	40.98
AT2G20180	Arabidopsis thaliana	3e-06	53.9	79	29.11
OS02G52190	Oryza sativa	3e-06	53.1	152	31.58
PP00097G00830	Physcomitrella patens	3e-06	53.5	178	26.97
AP00G04030	Auxenochlorella protothecoides	4e-06	52.8	68	36.76
AT1G09530	Arabidopsis thaliana	5e-06	53.1	78	34.62
PP00068G00530	Physcomitrella patens	5e-06	53.1	108	30.56
AT5G67110	Arabidopsis thaliana	5e-06	51.2	95	30.53
AT2G40435	Arabidopsis thaliana	7e-06	50.1	187	23.53
OS11G02054	Oryza sativa	7e-06	50.1	171	25.73
AT4G28800	Arabidopsis thaliana	7e-06	52.4	65	35.38

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment