Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT3G18660	Arabidopsis thaliana	0.0	1376	660	100.00
OS01G65780	Oryza sativa	0.0	787	642	59.50
ATR_00071G00800	Amborella trichopoda	0.0	772	643	59.41
AT1G77130	Arabidopsis thaliana	0.0	767	628	60.67
OS02G35020	Oryza sativa	0.0	571	580	50.00
PP00021G01830	Physcomitrella patens	0.0	542	499	52.51
ATR_00060G00010	Amborella trichopoda	1e-173	516	499	50.90
AT4G33330	Arabidopsis thaliana	4e-163	489	492	50.20
PP00351G00160	Physcomitrella patens	7e-155	482	498	45.78
PP00223G00150	Physcomitrella patens	2e-151	474	520	44.04
OS03G08600	Oryza sativa	3e-146	446	475	48.00
ATR_00025G03900	Amborella trichopoda	5e-143	434	467	46.25
AT1G08990	Arabidopsis thaliana	8e-138	422	501	45.71
AT1G54940	Arabidopsis thaliana	3e-133	410	506	44.66
ATR_00025G03920	Amborella trichopoda	3e-108	337	311	51.13
OS05G35200	Oryza sativa	8e-73	244	264	47.73
AT5G18480	Arabidopsis thaliana	9e-29	124	177	35.03
CR10G01170	Chlamydomonas reinhardtii	6e-27	119	175	34.86
OS02G41520	Oryza sativa	6e-27	119	165	35.76
VC00G90330	Volvox carteri	5e-26	117	173	34.68
OS04G43700	Oryza sativa	8e-26	114	172	34.30
PP00426G00170	Physcomitrella patens	1e-25	115	169	35.50
ES0010G00630	Ectocarpus siliculosus	1e-25	116	174	36.21
PP00038G01860	Physcomitrella patens	3e-24	111	163	33.13
phs112140	Phytophtora sojae	2e-22	105	221	28.96
ENSG00000056998	Homo sapiens	3e-22	104	260	31.54
PI00G61000	Picochlorum sp. SENEW3 (SE3)	5e-22	104	174	34.48
AA0005G05360	Aureococcus anophagefferens	1e-21	99.0	175	35.43
HE0000G55200	Helicosporidium sp.	5e-21	99.0	176	31.82
WBGene00006863	Caenorhabditis elegans	6e-21	99.8	214	32.24
WBGene00012020	Caenorhabditis elegans	8e-21	97.8	213	31.46
gsu129560	Galdieria sulphuraria	9e-21	100	225	32.89
gsu129580	Galdieria sulphuraria	9e-21	100	225	32.89
CM07G01740	Cyanidioschyzon merolae	8e-20	98.2	244	31.15
WBGene00011684	Caenorhabditis elegans	9e-20	96.7	167	29.94
gsu117060	Galdieria sulphuraria	1e-18	94.0	178	31.46
FBgn0265191	Drosophila melanogaster	1e-18	94.0	251	29.48
Naga_100177g11	Nannochloropsis gaditana	2e-18	90.5	199	29.65
ES0029G00730	Ectocarpus siliculosus	7e-18	88.6	169	31.36
CM11G00200	Cyanidioschyzon merolae	2e-17	90.5	134	34.33
AT1G09350	Arabidopsis thaliana	3e-17	87.4	268	28.36
AT1G60470	Arabidopsis thaliana	4e-17	87.0	291	25.77
PP00242G00410	Physcomitrella patens	1e-16	88.2	186	29.03
PP00217G00480	Physcomitrella patens	3e-16	86.3	177	28.81
ATR_00003G01960	Amborella trichopoda	4e-16	84.0	206	26.21
AT1G60450	Arabidopsis thaliana	4e-16	84.0	205	26.34
AT1G56600	Arabidopsis thaliana	4e-16	84.0	307	24.76
CNC64A_020G00590	Chlorella sp NC64A	8e-16	85.1	184	28.80
ATR_01134G00010	Amborella trichopoda	1e-15	84.3	113	34.51
PP00005G00610	Physcomitrella patens	2e-15	83.6	179	28.49
AT4G26250	Arabidopsis thaliana	2e-15	82.0	217	27.65
ccr07440	Chondrus crispus	3e-15	82.4	145	31.72
ccr57360	Chondrus crispus	4e-15	82.4	226	28.76
OS03G20120	Oryza sativa	8e-15	80.1	286	24.13
ATR_00096G00680	Amborella trichopoda	1e-14	79.3	295	25.42
PP00315G00270	Physcomitrella patens	2e-14	80.5	180	29.44
PP00029G00450	Physcomitrella patens	7e-14	76.6	172	27.91
AT2G47180	Arabidopsis thaliana	9e-14	77.0	296	25.34
emh370760	Emiliania huxleyi	9e-14	78.2	184	29.35
RCC4223.09g00200	Picochlorum_RCC4223	1e-13	78.2	171	29.24
AT5G30500	Arabidopsis thaliana	1e-13	76.3	124	32.26
emh154750	Emiliania huxleyi	2e-13	77.8	184	29.35
OS07G48830	Oryza sativa	5e-13	74.3	111	33.33
AA0020G01340	Aureococcus anophagefferens	9e-13	72.0	157	26.11
CM18G03580	Cyanidioschyzon merolae	1e-12	75.5	222	27.48
emh714830	Emiliania huxleyi	2e-12	74.7	235	28.09
emh714590	Emiliania huxleyi	6e-12	73.2	166	30.72
emh482370	Emiliania huxleyi	1e-11	72.0	193	28.50
OM_00G00460	Ostreococcus mediterraneus	1e-11	71.6	221	27.60
gsu127840	Galdieria sulphuraria	1e-11	70.9	305	23.93
DDB_G0286945	Dictyostelium discoideum	1e-11	70.5	190	24.21
ATR_00025G03930	Amborella trichopoda	3e-11	67.8	188	30.85
AT5G23790	Arabidopsis thaliana	9e-11	67.8	113	32.74
ATR_00106G00630	Amborella trichopoda	2e-10	67.4	216	22.22
emh381840	Emiliania huxleyi	4e-10	65.9	122	30.33
ES0187G00340	Ectocarpus siliculosus	6e-10	66.2	163	25.15
OS04G46750	Oryza sativa	6e-10	65.9	145	25.52
AT4G16600	Arabidopsis thaliana	9e-10	65.5	187	24.06
AA0051G00060	Aureococcus anophagefferens	2e-09	61.2	88	34.09
AT2G35710	Arabidopsis thaliana	3e-09	63.9	173	25.43
AP00G41240	Auxenochlorella protothecoides	3e-09	63.5	74	39.19
PI00G50290	Picochlorum sp. SENEW3 (SE3)	7e-09	61.2	156	24.36
TP08G00870	Thalassiosira pseudonana	2e-08	61.2	124	28.23
PTI_21G00620	Phaeodactylum tricornutum	2e-08	61.2	141	24.82
FC005G04850	Fragilariopsis cylindrus	3e-08	60.1	233	27.04
CNC64A_003G03580	Chlorella sp NC64A	7e-08	58.5	244	24.18
OS10G40640	Oryza sativa	7e-08	59.3	170	24.71
PTI_07G02720	Phaeodactylum tricornutum	2e-07	57.8	160	26.88
PTI_15G00590	Phaeodactylum tricornutum	2e-07	58.2	123	30.08
YKR058W	Saccharomyces cerevisiae strain S288C	2e-07	58.2	307	24.10
AA0001G05560	Aureococcus anophagefferens	3e-07	57.8	236	25.00
FC006G02310	Fragilariopsis cylindrus	3e-07	57.4	182	23.08
AC00G86360	Asterochloris sp. Cgr-DA1pho v2.0	9e-07	54.7	165	24.85
FC006G01550	Fragilariopsis cylindrus	2e-06	54.7	161	26.71
emh439270	Emiliania huxleyi	3e-06	54.7	156	28.21
CNC64A_016G02050	Chlorella sp NC64A	4e-06	52.4	235	25.53
ES0048G00650	Ectocarpus siliculosus	5e-06	54.3	103	32.04
emh544170	Emiliania huxleyi	5e-06	51.6	109	30.28

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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