Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT2G36270	Arabidopsis thaliana	0.0	900	443	100.00
ATR_00114G00100	Amborella trichopoda	4e-71	236	422	44.08
OS01G64000	Oryza sativa	2e-66	224	450	39.33
AT1G49720	Arabidopsis thaliana	3e-47	173	415	36.14
OS06G10880	Oryza sativa	8e-47	170	401	37.66
ATR_00040G00270	Amborella trichopoda	4e-46	168	401	35.16
OS08G36790	Oryza sativa	4e-38	146	375	36.27
PP00009G01290	Physcomitrella patens	2e-36	140	187	48.13
OS09G28310	Oryza sativa	1e-32	132	288	39.58
AT3G44460	Arabidopsis thaliana	1e-29	122	183	42.08
ATR_00132G00190	Amborella trichopoda	9e-29	121	192	42.71
OS05G41070	Oryza sativa	3e-27	115	304	36.51
AT4G34000	Arabidopsis thaliana	1e-26	114	209	39.23
ATR_00101G00100	Amborella trichopoda	4e-26	111	194	38.66
PP00049G00710	Physcomitrella patens	1e-24	108	93	67.74
AT1G45249	Arabidopsis thaliana	2e-24	108	184	42.39
AT3G56850	Arabidopsis thaliana	3e-23	102	184	38.59
AT3G19290	Arabidopsis thaliana	2e-22	102	184	41.30
OS02G52780	Oryza sativa	3e-22	100	183	38.80
AT2G41070	Arabidopsis thaliana	8e-17	84.0	81	61.73
AT5G44080	Arabidopsis thaliana	2e-16	83.6	144	42.36
OS07G48660	Oryza sativa	4e-16	82.0	82	59.76
ATR_00010G02590	Amborella trichopoda	2e-14	76.3	203	36.45
OS01G59760	Oryza sativa	6e-14	76.6	58	68.97
AT4G35900	Arabidopsis thaliana	2e-13	74.3	244	32.79
OS01G64730	Oryza sativa	1e-12	71.2	76	50.00
ATR_00061G00920	Amborella trichopoda	2e-12	69.7	60	58.33
AT1G03970	Arabidopsis thaliana	2e-12	70.9	79	54.43
ATR_00152G00260	Amborella trichopoda	5e-12	69.7	64	62.50
OS03G20650	Oryza sativa	9e-12	68.6	46	71.74
OS05G36160	Oryza sativa	2e-11	68.2	71	52.11
AT2G17770	Arabidopsis thaliana	3e-11	66.6	124	39.52
ATR_00061G01870	Amborella trichopoda	8e-11	64.7	51	60.78
OS08G43600	Oryza sativa	6e-10	62.0	51	62.75
AT5G42910	Arabidopsis thaliana	7e-10	64.3	81	41.98
OS09G36910	Oryza sativa	3e-09	60.5	51	60.78
OS12G40920	Oryza sativa	7e-09	60.8	71	46.48
OS02G16680	Oryza sativa	1e-08	59.7	105	36.19
OS02G07840	Oryza sativa	3e-08	58.5	105	36.19
VC00G78770	Volvox carteri	8e-08	58.2	63	49.21
CV00G72360	Coccomyxa subellipsoidea C-169	9e-08	57.8	47	53.19
OS06G50600	Oryza sativa	1e-07	55.5	52	51.92
OS06G50830	Oryza sativa	1e-07	55.5	52	51.92
AT2G18160	Arabidopsis thaliana	2e-07	54.3	53	47.17
OS06G50480	Oryza sativa	4e-07	53.5	48	54.17
PP00158G00490	Physcomitrella patens	5e-07	54.7	67	47.76
PI00G56670	Picochlorum sp. SENEW3 (SE3)	1e-06	53.9	52	50.00
CR05G03860	Chlamydomonas reinhardtii	1e-06	54.7	63	47.62
ENSMUSG00000026663	Mus musculus	1e-06	54.7	73	46.58
OS02G58670	Oryza sativa	2e-06	51.6	49	55.10
AT3G49760	Arabidopsis thaliana	2e-06	51.6	94	36.17
CNC64A_006G03780	Chlorella sp NC64A	2e-06	53.5	43	58.14
AP00G44700	Auxenochlorella protothecoides	3e-06	53.5	71	45.07
ENSG00000118217	Homo sapiens	3e-06	53.9	99	38.38
AT3G30530	Arabidopsis thaliana	3e-06	51.2	51	52.94
RCC4223.01g11620	Picochlorum_RCC4223	3e-06	52.4	51	49.02
AC00G36350	Asterochloris sp. Cgr-DA1pho v2.0	4e-06	52.8	36	66.67
Naga_100087g2	Nannochloropsis gaditana	5e-06	52.8	65	44.62
ATR_00048G00530	Amborella trichopoda	8e-06	52.0	91	42.86
ES0035G00410	Ectocarpus siliculosus	8e-06	52.0	79	39.24
AT5G15830	Arabidopsis thaliana	8e-06	50.1	60	45.00
AP00G08380	Auxenochlorella protothecoides	8e-06	51.2	42	59.52
DDB_G0278379	Dictyostelium discoideum	9e-06	52.4	71	42.25

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment