Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT2G32530	Arabidopsis thaliana	0.0	1568	756	100.00
AT2G32540	Arabidopsis thaliana	0.0	1342	756	85.45
AT2G32620	Arabidopsis thaliana	0.0	1222	761	80.29
AT2G32610	Arabidopsis thaliana	0.0	1193	758	76.39
AT4G15290	Arabidopsis thaliana	0.0	1130	760	74.61
AT4G15320	Arabidopsis thaliana	0.0	1003	811	64.73
OS10G20090	Oryza sativa	0.0	572	731	41.86
ATR_00017G01730	Amborella trichopoda	0.0	556	775	42.06
ATR_00017G00080	Amborella trichopoda	0.0	547	697	43.19
OS04G35020	Oryza sativa	9e-142	442	741	35.90
AT2G25540	Arabidopsis thaliana	1e-123	402	804	32.09
AT5G17420	Arabidopsis thaliana	2e-123	401	788	33.63
AT5G05170	Arabidopsis thaliana	3e-123	401	823	32.44
OS03G59340	Oryza sativa	4e-122	399	808	32.67
ATR_00081G00760	Amborella trichopoda	1e-121	398	799	32.42
OS07G10770	Oryza sativa	1e-121	397	810	32.72
AT4G32410	Arabidopsis thaliana	1e-121	397	798	32.58
OS09G25490	Oryza sativa	3e-121	395	785	32.61
ATR_00137G00140	Amborella trichopoda	8e-121	394	793	33.17
OS05G08370	Oryza sativa	2e-120	394	772	32.51
ATR_00103G00760	Amborella trichopoda	8e-120	392	821	31.55
ATR_00061G02350	Amborella trichopoda	2e-119	383	770	32.60
OS01G54620	Oryza sativa	2e-118	387	800	31.87
AT5G09870	Arabidopsis thaliana	2e-116	383	806	31.64
OS09G30130	Oryza sativa	1e-115	372	762	31.36
PP00213G00010	Physcomitrella patens	3e-115	377	829	31.85
OS09G30120	Oryza sativa	4e-115	372	756	32.01
AT4G18780	Arabidopsis thaliana	5e-115	378	817	31.70
ATR_00170G00010	Amborella trichopoda	4e-113	370	692	34.10
PP00029G01150	Physcomitrella patens	3e-112	372	831	31.17
AT5G64740	Arabidopsis thaliana	5e-111	369	830	30.72
AT4G39350	Arabidopsis thaliana	5e-111	369	693	33.33
AT2G21770	Arabidopsis thaliana	3e-110	367	806	30.77
ATR_00017G02090	Amborella trichopoda	6e-110	366	781	30.86
AT1G55850	Arabidopsis thaliana	2e-108	353	741	33.87
ATR_00045G01550	Amborella trichopoda	5e-108	360	801	30.34
ATR_00002G02960	Amborella trichopoda	2e-106	347	642	33.64
OS07G14850	Oryza sativa	4e-105	353	696	32.61
OS07G24190	Oryza sativa	1e-102	346	698	31.81
PP00090G01250	Physcomitrella patens	5e-102	345	831	30.93
OS03G62090	Oryza sativa	1e-101	343	698	31.66
PP00112G00250	Physcomitrella patens	2e-99	338	709	32.58
OS02G49332	Oryza sativa	2e-99	330	757	30.25
AT4G24000	Arabidopsis thaliana	2e-99	329	672	32.74
PP00111G00250	Physcomitrella patens	9e-99	337	858	30.65
PP00269G00120	Physcomitrella patens	7e-98	333	853	29.43
AT4G23990	Arabidopsis thaliana	8e-98	326	657	32.72
AT1G32180	Arabidopsis thaliana	2e-97	330	863	29.08
OS06G02180	Oryza sativa	1e-96	331	814	29.73
AT4G24010	Arabidopsis thaliana	2e-96	322	666	31.83
ATR_00048G00590	Amborella trichopoda	3e-96	329	754	29.97
PP00310G00070	Physcomitrella patens	3e-96	329	817	29.74
AT4G38190	Arabidopsis thaliana	8e-96	328	738	29.95
PP00243G00010	Physcomitrella patens	8e-96	328	863	30.01
PP00057G00480	Physcomitrella patens	1e-95	328	816	29.53
AT5G16910	Arabidopsis thaliana	2e-95	327	798	30.83
AT3G03050	Arabidopsis thaliana	2e-94	324	815	30.55
OS10G42750	Oryza sativa	2e-93	321	824	28.64
AT2G33100	Arabidopsis thaliana	3e-93	320	762	29.66
OS08G25710	Oryza sativa	2e-92	318	705	31.06
OS07G36700	Oryza sativa	3e-92	313	702	30.91
OS07G36610	Oryza sativa	3e-92	314	794	29.22
OS07G36630	Oryza sativa	5e-92	313	827	27.93
PP00068G00840	Physcomitrella patens	6e-92	317	758	30.21
PP00111G00180	Physcomitrella patens	8e-92	317	843	29.42
OS10G20260	Oryza sativa	1e-91	311	650	30.62
OS06G22980	Oryza sativa	1e-91	314	768	29.82
PP00243G00060	Physcomitrella patens	2e-91	316	838	29.24
ATR_00021G02120	Amborella trichopoda	5e-91	307	726	32.64
OS07G36690	Oryza sativa	7e-91	310	707	30.55
ATR_00022G01210	Amborella trichopoda	5e-90	312	780	29.23
OS07G36740	Oryza sativa	1e-89	307	692	30.64
OS07G36750	Oryza sativa	2e-87	301	756	29.37
OS12G36890	Oryza sativa	2e-87	305	780	29.36
ATR_00019G03800	Amborella trichopoda	1e-86	301	813	28.66
AT1G02730	Arabidopsis thaliana	2e-85	299	826	28.45
OS08G06380	Oryza sativa	8e-83	289	745	28.19
AT5G44030	Arabidopsis thaliana	1e-79	281	369	41.19
ATR_00022G00640	Amborella trichopoda	1e-79	281	369	40.38
ATR_00017G00110	Amborella trichopoda	4e-79	270	263	49.05
PP00008G00780	Physcomitrella patens	1e-78	275	369	40.65
ATR_00067G02090	Amborella trichopoda	2e-77	275	371	40.16
PP00030G00170	Physcomitrella patens	3e-77	275	372	40.59
OS10G32980	Oryza sativa	2e-76	272	370	40.00
OS04G35030	Oryza sativa	8e-67	233	232	49.57
ATR_00061G02330	Amborella trichopoda	1e-61	221	429	32.17
ATR_00057G00940	Amborella trichopoda	3e-53	199	511	29.35
PP00059G01570	Physcomitrella patens	8e-43	167	474	28.27
ATR_00057G00930	Amborella trichopoda	9e-32	135	183	42.08
PP00189G00480	Physcomitrella patens	2e-30	131	129	48.84
PP00189G00510	Physcomitrella patens	2e-30	131	129	48.84
PP00059G01580	Physcomitrella patens	3e-22	102	135	40.00
OS06G39970	Oryza sativa	1e-20	101	307	26.06
OS12G29300	Oryza sativa	1e-17	88.2	135	34.07
ATR_00061G02320	Amborella trichopoda	2e-16	80.9	65	55.38
PP00015G00170	Physcomitrella patens	3e-16	81.3	97	45.36
OS09G30105	Oryza sativa	4e-16	84.0	142	33.80
PP00120G00840	Physcomitrella patens	2e-13	72.8	91	38.46
ATR_00067G02080	Amborella trichopoda	1e-07	55.8	49	46.94
OS07G36680	Oryza sativa	1e-07	56.6	71	43.66
Naga_100079g22	Nannochloropsis gaditana	3e-07	57.8	195	25.13

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment