Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G72520	Arabidopsis thaliana	0.0	1926	927	100.00
AT1G17420	Arabidopsis thaliana	0.0	1614	928	83.41
OS03G08220	Oryza sativa	0.0	1205	880	65.80
ATR_00049G02180	Amborella trichopoda	0.0	1001	845	55.62
ATR_00024G02970	Amborella trichopoda	0.0	914	622	69.61
AT1G67560	Arabidopsis thaliana	0.0	892	921	50.05
ATR_00022G02400	Amborella trichopoda	0.0	861	870	49.89
ATR_00022G02450	Amborella trichopoda	0.0	861	847	50.41
PP00070G00750	Physcomitrella patens	0.0	850	873	47.54
OS02G10120	Oryza sativa	0.0	786	842	46.32
OS04G37430	Oryza sativa	0.0	773	575	62.61
AT3G45140	Arabidopsis thaliana	0.0	767	861	45.30
OS08G39850	Oryza sativa	0.0	769	841	48.04
OS08G39840	Oryza sativa	0.0	768	828	48.31
AT1G55020	Arabidopsis thaliana	0.0	736	847	44.86
AT3G22400	Arabidopsis thaliana	0.0	723	869	44.07
PP00232G00410	Physcomitrella patens	0.0	725	813	45.51
PP00021G01990	Physcomitrella patens	0.0	721	855	42.46
PP00171G00680	Physcomitrella patens	0.0	709	855	42.11
OS03G49260	Oryza sativa	0.0	697	858	42.77
OS03G49380	Oryza sativa	0.0	697	877	42.87
PP00419G00020	Physcomitrella patens	0.0	684	933	40.84
PP00419G00030	Physcomitrella patens	0.0	684	933	40.84
PP00097G01010	Physcomitrella patens	0.0	682	754	45.36
OS03G52860	Oryza sativa	0.0	681	862	42.46
PP00419G00010	Physcomitrella patens	0.0	680	830	42.89
PP00419G00050	Physcomitrella patens	0.0	679	828	42.51
PP00434G00160	Physcomitrella patens	0.0	671	887	41.83
ATR_00066G00560	Amborella trichopoda	0.0	655	834	42.45
OS12G37260	Oryza sativa	0.0	656	845	43.67
PP00036G01900	Physcomitrella patens	0.0	654	825	42.18
OS05G23880	Oryza sativa	0.0	637	836	42.46
OS03G49350	Oryza sativa	0.0	624	702	45.44
OS11G36719	Oryza sativa	0.0	556	840	42.14
ATR_00022G02890	Amborella trichopoda	4e-158	485	620	44.03
PP00312G00290	Physcomitrella patens	2e-152	462	427	51.99
OS12G37350	Oryza sativa	8e-152	462	461	49.46
PP00190G00290	Physcomitrella patens	5e-144	455	552	44.02
CV00G19880	Coccomyxa subellipsoidea C-169	5e-135	427	725	36.83
CV00G27150	Coccomyxa subellipsoidea C-169	7e-126	416	852	34.86
ATR_00022G02410	Amborella trichopoda	3e-115	362	308	56.17
PP00505G00140	Physcomitrella patens	1e-97	315	321	46.42
VC00G96890	Volvox carteri	6e-89	311	590	35.59
VC00G96880	Volvox carteri	3e-86	303	608	33.88
AC00G29780	Asterochloris sp. Cgr-DA1pho v2.0	4e-84	280	329	41.95
CR12G02920	Chlamydomonas reinhardtii	6e-82	292	577	35.36
VC00G90070	Volvox carteri	2e-78	281	590	34.92
VC00G90100	Volvox carteri	3e-72	263	453	37.75
ATR_00103G00230	Amborella trichopoda	6e-72	243	256	46.48
ATR_00022G02900	Amborella trichopoda	3e-68	233	256	45.31
CNC64A_001G03010	Chlorella sp NC64A	2e-61	217	346	39.02
PP00312G00300	Physcomitrella patens	4e-56	202	285	36.49
VC00G90090	Volvox carteri	7e-56	214	364	37.09
ATR_00103G00260	Amborella trichopoda	1e-54	195	237	45.15
OS12G37320	Oryza sativa	4e-54	197	319	36.99
OL07G01910	Ostreococcus lucimarinus	1e-45	182	494	27.53
ENSG00000275565	Homo sapiens	8e-45	176	513	28.85
ENSG00000012779	Homo sapiens	8e-45	176	513	28.85
ENSMUSG00000018924	Mus musculus	2e-42	169	542	28.78
ENSMUSG00000000320	Mus musculus	5e-41	165	543	28.91
ENSG00000179477	Homo sapiens	1e-39	161	473	27.70
ENSG00000179593	Homo sapiens	3e-39	159	523	29.45
ENSMUSG00000032807	Mus musculus	2e-37	154	511	26.81
ES0424G00010	Ectocarpus siliculosus	1e-30	132	405	28.40
ccr28460	Chondrus crispus	2e-27	123	431	27.15
DDB_G0279909	Dictyostelium discoideum	4e-27	122	395	25.82
ES0010G00330	Ectocarpus siliculosus	2e-26	119	389	27.76
ES0424G00020	Ectocarpus siliculosus	2e-26	120	374	28.34
OS02G19790	Oryza sativa	3e-22	103	148	37.84
ATR_00022G02390	Amborella trichopoda	1e-20	93.6	96	41.67
ES0010G00190	Ectocarpus siliculosus	1e-19	97.8	223	30.94
ATR_00022G02470	Amborella trichopoda	4e-18	93.2	185	30.81
phs75850	Phytophtora sojae	1e-13	78.6	312	27.56
phs48550	Phytophtora sojae	5e-12	73.6	312	24.68
OS05G28770	Oryza sativa	5e-11	69.7	55	50.91
phs48530	Phytophtora sojae	8e-09	62.8	273	24.91
OS06G04420	Oryza sativa	2e-08	58.5	101	33.66
PP00209G00410	Physcomitrella patens	3e-08	58.9	77	36.36
ATR_00022G02420	Amborella trichopoda	5e-08	57.8	116	35.34
emh544230	Emiliania huxleyi	7e-06	54.3	200	23.50

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment