Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G66350	Arabidopsis thaliana	0.0	1053	512	100.00
AT3G03450	Arabidopsis thaliana	0.0	651	503	66.40
AT1G14920	Arabidopsis thaliana	0.0	620	517	60.54
AT5G17490	Arabidopsis thaliana	0.0	615	533	61.54
AT2G01570	Arabidopsis thaliana	0.0	615	583	55.75
ATR_00010G01050	Amborella trichopoda	0.0	611	561	56.86
OS03G49990	Oryza sativa	2e-174	513	390	63.08
PP00012G01240	Physcomitrella patens	4e-132	407	522	45.40
PP00175G00070	Physcomitrella patens	2e-118	368	380	51.58
ATR_00122G00700	Amborella trichopoda	2e-117	362	433	45.50
OS01G45860	Oryza sativa	1e-107	337	372	47.85
OS11G31100	Oryza sativa	6e-93	306	385	43.64
PP00063G00710	Physcomitrella patens	8e-92	303	376	42.29
PP00165G00470	Physcomitrella patens	2e-91	292	374	43.58
PP00165G00380	Physcomitrella patens	6e-86	287	376	41.22
OS05G49930	Oryza sativa	3e-80	265	424	37.74
ATR_00049G00330	Amborella trichopoda	4e-79	264	411	38.93
PP00063G00780	Physcomitrella patens	7e-79	269	373	41.29
PP00346G00030	Physcomitrella patens	2e-74	254	372	37.10
ATR_00012G00770	Amborella trichopoda	2e-74	240	195	59.49
PP00456G00020	Physcomitrella patens	4e-74	253	398	37.69
ATR_00088G01300	Amborella trichopoda	1e-73	249	385	37.92
PP00130G00180	Physcomitrella patens	2e-73	250	390	35.38
PP00031G00200	Physcomitrella patens	2e-72	249	375	36.53
PP00031G00220	Physcomitrella patens	2e-71	246	395	34.43
ATR_00069G00740	Amborella trichopoda	2e-71	246	379	35.88
OS07G39470	Oryza sativa	4e-71	243	370	36.76
AT5G48150	Arabidopsis thaliana	6e-70	238	372	36.02
ATR_00004G02950	Amborella trichopoda	7e-70	239	386	37.82
PP00017G00260	Physcomitrella patens	9e-70	241	371	36.12
ATR_00043G00240	Amborella trichopoda	7e-69	238	385	36.10
AT1G50600	Arabidopsis thaliana	2e-68	236	372	36.29
AT2G04890	Arabidopsis thaliana	1e-67	230	367	35.69
PP00116G00880	Physcomitrella patens	1e-67	232	381	36.48
ATR_00053G00760	Amborella trichopoda	2e-67	231	427	33.49
OS01G67650	Oryza sativa	3e-67	232	385	38.44
PP00281G00210	Physcomitrella patens	1e-66	234	375	36.53
PP00130G00200	Physcomitrella patens	4e-66	231	374	37.17
PP00324G00270	Physcomitrella patens	2e-65	231	371	38.01
OS10G22430	Oryza sativa	2e-65	227	374	35.29
PP00240G00560	Physcomitrella patens	3e-65	224	376	36.44
OS07G36170	Oryza sativa	5e-65	227	416	33.65
OS01G65900	Oryza sativa	1e-64	225	373	37.27
ATR_00032G01550	Amborella trichopoda	5e-64	221	363	37.74
PP00362G00110	Physcomitrella patens	5e-64	226	412	35.92
ATR_00186G00030	Amborella trichopoda	2e-63	223	383	35.77
OS11G03110	Oryza sativa	3e-63	223	375	37.87
PP00882G00010	Physcomitrella patens	5e-63	226	377	38.20
AT3G54220	Arabidopsis thaliana	4e-62	220	373	37.80
ATR_00077G02220	Amborella trichopoda	1e-61	221	362	37.57
OS03G09280	Oryza sativa	2e-61	216	375	34.93
PP00085G00620	Physcomitrella patens	7e-60	216	363	37.19
AT1G21450	Arabidopsis thaliana	2e-59	212	376	35.37
AT1G63100	Arabidopsis thaliana	4e-59	212	383	34.46
ATR_04794G00010	Amborella trichopoda	7e-59	209	454	33.48
AT4G17230	Arabidopsis thaliana	3e-58	207	378	34.92
ATR_00017G00270	Amborella trichopoda	4e-58	205	395	35.70
PP00084G01460	Physcomitrella patens	1e-57	209	378	35.45
OS12G02870	Oryza sativa	2e-57	208	375	37.87
PP00205G00010	Physcomitrella patens	6e-57	208	384	34.64
AT5G41920	Arabidopsis thaliana	6e-56	198	376	35.64
ATR_00036G01310	Amborella trichopoda	1e-55	196	358	35.20
OS07G38030	Oryza sativa	3e-55	198	371	35.58
PP00098G00120	Physcomitrella patens	6e-55	202	381	33.60
ATR_00016G01740	Amborella trichopoda	8e-55	189	227	45.37
ATR_00012G02060	Amborella trichopoda	1e-54	201	384	32.81
OS03G48450	Oryza sativa	3e-53	196	394	33.25
AT1G55580	Arabidopsis thaliana	7e-53	191	305	37.05
AT1G07530	Arabidopsis thaliana	2e-51	191	407	32.19
PP00020G00390	Physcomitrella patens	1e-50	189	378	31.75
OS03G51330	Oryza sativa	1e-50	187	375	35.47
AT5G59450	Arabidopsis thaliana	2e-49	185	412	30.83
ATR_00166G00290	Amborella trichopoda	2e-49	181	381	29.66
OS01G62460	Oryza sativa	4e-49	185	378	32.01
AT2G29060	Arabidopsis thaliana	6e-49	184	372	32.80
PP00359G00180	Physcomitrella patens	3e-48	182	375	31.20
OS01G71970	Oryza sativa	5e-48	177	406	36.45
PP00213G00330	Physcomitrella patens	5e-47	179	368	31.79
ATR_00156G00320	Amborella trichopoda	1e-46	175	381	33.60
AT3G46600	Arabidopsis thaliana	2e-46	175	377	31.30
OS04G50060	Oryza sativa	4e-46	175	386	30.05
PP00359G00200	Physcomitrella patens	5e-46	176	380	31.84
ATR_00166G00280	Amborella trichopoda	6e-46	173	376	29.52
OS06G03710	Oryza sativa	1e-45	174	387	33.33
ATR_00166G00250	Amborella trichopoda	1e-45	172	378	29.10
AT2G29065	Arabidopsis thaliana	1e-44	171	376	31.65
OS12G38490	Oryza sativa	2e-44	171	373	30.56
OS05G40710	Oryza sativa	7e-44	167	400	31.00
ATR_00166G00230	Amborella trichopoda	1e-43	166	380	29.21
AT2G37650	Arabidopsis thaliana	2e-43	168	379	31.40
AT5G66770	Arabidopsis thaliana	2e-43	167	373	34.85
AT1G07520	Arabidopsis thaliana	2e-43	167	378	30.42
OS11G47890	Oryza sativa	1e-42	165	386	32.12
OS11G47900	Oryza sativa	2e-42	164	383	31.33
OS11G47870	Oryza sativa	3e-42	164	381	30.71
PP00001G03120	Physcomitrella patens	6e-42	160	375	29.07
OS12G04200	Oryza sativa	5e-41	159	385	29.35
AT4G37650	Arabidopsis thaliana	1e-40	158	384	30.21
ATR_00059G00310	Amborella trichopoda	2e-40	158	333	33.93
PP00097G00190	Physcomitrella patens	3e-40	157	375	29.87
PP00181G00170	Physcomitrella patens	3e-40	159	382	27.75
AT4G08250	Arabidopsis thaliana	5e-40	155	391	31.20
AT3G50650	Arabidopsis thaliana	9e-40	155	350	33.71
ATR_00061G00180	Amborella trichopoda	1e-39	153	378	31.75
ATR_00045G01920	Amborella trichopoda	2e-39	154	375	28.27
PP00036G00670	Physcomitrella patens	2e-38	152	374	27.81
PP00130G00450	Physcomitrella patens	2e-37	149	219	36.99
ATR_00045G01930	Amborella trichopoda	3e-37	147	285	30.88
ATR_00086G00280	Amborella trichopoda	3e-37	146	380	26.58
OS02G10360	Oryza sativa	4e-37	146	380	31.58
ATR_00012G00780	Amborella trichopoda	8e-37	137	98	64.29
OS03G15680	Oryza sativa	2e-36	146	483	28.99
OS06G40780	Oryza sativa	2e-36	146	361	32.13
OS11G47920	Oryza sativa	2e-36	145	373	29.49
OS07G39820	Oryza sativa	3e-36	145	410	28.54
PP00144G00640	Physcomitrella patens	4e-36	143	396	27.53
PP00084G00550	Physcomitrella patens	6e-36	145	404	27.72
AT5G52510	Arabidopsis thaliana	9e-36	144	384	28.65
ATR_00030G00420	Amborella trichopoda	1e-35	142	390	29.49
OS11G47910	Oryza sativa	3e-35	142	381	28.87
ATR_00016G01750	Amborella trichopoda	3e-35	134	141	46.81
ATR_00045G01960	Amborella trichopoda	5e-35	135	225	34.67
PP00280G00300	Physcomitrella patens	8e-35	135	248	34.68
OS01G67670	Oryza sativa	9e-35	136	206	39.81
PP00080G00170	Physcomitrella patens	1e-34	140	153	46.41
AT1G50420	Arabidopsis thaliana	7e-34	137	157	42.68
ATR_00043G00330	Amborella trichopoda	8e-33	133	395	26.58
OS11G04400	Oryza sativa	9e-33	134	413	26.88
PP00318G00030	Physcomitrella patens	5e-32	129	304	29.61
OS02G45760	Oryza sativa	2e-31	131	365	28.49
PP00197G00880	Physcomitrella patens	7e-31	131	394	25.89
ATR_00066G02290	Amborella trichopoda	3e-30	125	375	28.80
AT3G49950	Arabidopsis thaliana	4e-30	125	378	26.46
OS03G31880	Oryza sativa	2e-29	125	416	26.20
PP00072G00260	Physcomitrella patens	4e-29	126	389	28.28
OS03G40080	Oryza sativa	3e-28	122	315	28.89
OS05G31420	Oryza sativa	4e-28	121	406	28.08
OS05G42130	Oryza sativa	6e-28	119	402	26.62
OS04G49110	Oryza sativa	8e-28	121	298	29.19
ATR_00059G00640	Amborella trichopoda	1e-27	119	366	28.42
OS12G04370	Oryza sativa	5e-27	119	463	24.84
ATR_00137G00340	Amborella trichopoda	1e-26	115	365	29.32
OS05G31380	Oryza sativa	4e-26	115	383	28.20
ATR_00007G03270	Amborella trichopoda	6e-26	115	412	27.18
OS11G04570	Oryza sativa	7e-26	115	153	39.87
AT4G36710	Arabidopsis thaliana	3e-25	112	384	26.82
AT4G00150	Arabidopsis thaliana	5e-25	112	369	26.56
OS12G04380	Oryza sativa	9e-24	107	167	33.53
OS11G04590	Oryza sativa	2e-23	107	163	33.74
PP00016G01930	Physcomitrella patens	2e-23	103	140	40.71
ATR_00044G02470	Amborella trichopoda	1e-22	105	387	26.10
AT2G45160	Arabidopsis thaliana	9e-22	102	389	25.96
AT3G60630	Arabidopsis thaliana	1e-21	102	302	27.15
OS04G35250	Oryza sativa	1e-21	101	332	28.01
AT3G13840	Arabidopsis thaliana	1e-19	96.3	449	24.72
OS07G40020	Oryza sativa	3e-19	94.4	394	24.62
ATR_00007G03300	Amborella trichopoda	3e-18	92.0	393	26.21
OS06G01620	Oryza sativa	3e-18	91.3	294	27.21
OS11G06180	Oryza sativa	2e-17	89.0	353	26.63
OS02G44370	Oryza sativa	7e-17	87.8	295	29.49
PP00117G00580	Physcomitrella patens	2e-16	85.9	281	27.05
OS06G10900	Oryza sativa	5e-16	81.6	168	36.31
OS04G46860	Oryza sativa	5e-15	82.0	297	27.95
OS02G44360	Oryza sativa	1e-14	80.9	297	28.28
ATR_00045G01970	Amborella trichopoda	9e-12	69.7	114	31.58
ATR_00024G02580	Amborella trichopoda	6e-11	68.9	289	23.53
ATR_00012G00790	Amborella trichopoda	1e-10	64.3	65	55.38
ATR_00153G00110	Amborella trichopoda	1e-10	67.8	121	34.71
OS03G29480	Oryza sativa	2e-09	63.9	393	24.94
OS10G40390	Oryza sativa	9e-09	62.0	244	26.64
OS11G11600	Oryza sativa	8e-08	58.2	83	39.76
OS12G06540	Oryza sativa	1e-07	57.8	123	34.96
AT5G67411	Arabidopsis thaliana	3e-07	54.7	206	29.13

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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