Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G65310	Arabidopsis thaliana	0.0	595	283	100.00
AT4G30280	Arabidopsis thaliana	0.0	544	283	93.29
AT4G30290	Arabidopsis thaliana	0.0	513	276	90.58
AT5G48070	Arabidopsis thaliana	0.0	508	279	85.30
AT5G57560	Arabidopsis thaliana	1e-138	400	281	66.19
AT4G25810	Arabidopsis thaliana	8e-134	387	280	63.93
AT4G30270	Arabidopsis thaliana	1e-131	381	272	67.65
AT5G57550	Arabidopsis thaliana	2e-131	382	280	62.14
OS06G48160	Oryza sativa	8e-119	350	286	57.69
AT2G18800	Arabidopsis thaliana	5e-117	345	286	58.04
OS06G48200	Oryza sativa	1e-115	341	278	58.27
OS06G48180	Oryza sativa	7e-115	339	259	61.39
ATR_00019G03570	Amborella trichopoda	8e-114	337	278	57.91
ATR_00062G00050	Amborella trichopoda	1e-111	331	286	57.34
AT4G14130	Arabidopsis thaliana	1e-110	328	283	56.54
ATR_00062G00020	Amborella trichopoda	4e-110	327	291	56.36
AT3G23730	Arabidopsis thaliana	1e-109	326	278	53.96
AT5G57540	Arabidopsis thaliana	2e-108	323	260	59.62
AT5G57530	Arabidopsis thaliana	4e-108	322	264	58.71
ATR_00019G03590	Amborella trichopoda	9e-103	309	299	50.17
AT4G25820	Arabidopsis thaliana	1e-102	308	272	56.25
ATR_00065G01750	Amborella trichopoda	2e-96	293	288	52.08
ATR_00065G01770	Amborella trichopoda	2e-95	290	286	52.10
OS06G48170	Oryza sativa	7e-95	288	259	51.74
OS04G51460	Oryza sativa	5e-92	281	259	50.58
OS08G14210	Oryza sativa	2e-91	282	280	48.21
OS04G51520	Oryza sativa	5e-91	280	277	46.93
ATR_00026G01160	Amborella trichopoda	8e-87	268	281	45.55
OS04G51450	Oryza sativa	7e-86	266	247	51.42
ATR_00016G02940	Amborella trichopoda	1e-84	263	239	53.56
PP00168G00050	Physcomitrella patens	1e-84	263	260	48.85
ATR_00019G03550	Amborella trichopoda	2e-84	261	279	46.24
AT5G65730	Arabidopsis thaliana	2e-84	261	283	44.52
AT4G37800	Arabidopsis thaliana	5e-84	261	277	46.93
AT5G13870	Arabidopsis thaliana	5e-83	258	238	52.52
OS08G14200	Oryza sativa	3e-82	256	279	45.16
OS08G13980	Oryza sativa	9e-82	255	266	48.87
OS11G33270	Oryza sativa	2e-80	251	253	49.01
AT4G28850	Arabidopsis thaliana	6e-80	250	284	44.37
AT2G06850	Arabidopsis thaliana	8e-80	250	287	46.34
ATR_00026G01070	Amborella trichopoda	2e-79	248	265	46.04
OS08G13920	Oryza sativa	9e-79	247	248	50.40
PP00004G00240	Physcomitrella patens	1e-77	244	242	48.35
AT2G14620	Arabidopsis thaliana	2e-77	244	275	43.27
ATR_00062G00060	Amborella trichopoda	6e-76	236	192	59.90
OS02G17900	Oryza sativa	6e-75	237	266	46.24
PP00309G00230	Physcomitrella patens	1e-74	237	279	43.73
PP00309G00220	Physcomitrella patens	1e-74	237	242	48.76
PP00004G00260	Physcomitrella patens	5e-74	236	242	47.52
PP00168G00160	Physcomitrella patens	5e-74	235	243	46.91
PP00309G00140	Physcomitrella patens	1e-73	234	238	46.64
OS02G17880	Oryza sativa	4e-73	233	265	47.55
PP00291G00470	Physcomitrella patens	9e-73	233	245	47.35
PP00193G00050	Physcomitrella patens	1e-72	233	244	47.13
PP00195G00150	Physcomitrella patens	1e-72	232	265	44.91
PP00272G00150	Physcomitrella patens	2e-72	230	243	46.50
AT4G03210	Arabidopsis thaliana	4e-72	230	241	45.23
AT4G13090	Arabidopsis thaliana	4e-72	230	280	44.29
ATR_00453G00010	Amborella trichopoda	4e-72	231	293	40.61
AT1G11545	Arabidopsis thaliana	8e-72	230	293	41.30
ATR_00026G01110	Amborella trichopoda	2e-71	226	212	50.00
PP00618G00010	Physcomitrella patens	8e-71	231	245	46.94
OS06G22919	Oryza sativa	2e-69	224	288	42.01
ATR_00004G02430	Amborella trichopoda	2e-69	223	289	40.14
PP00026G00650	Physcomitrella patens	7e-68	219	241	43.98
AT4G13080	Arabidopsis thaliana	7e-67	216	257	43.19
ATR_00026G01130	Amborella trichopoda	1e-66	213	177	53.11
ATR_00109G01360	Amborella trichopoda	2e-66	213	194	52.58
OS07G34580	Oryza sativa	2e-66	216	246	43.09
AT3G25050	Arabidopsis thaliana	4e-64	209	287	39.37
OS04G51510	Oryza sativa	4e-64	208	275	43.27
PP00122G00290	Physcomitrella patens	3e-59	197	249	43.78
PP00213G00650	Physcomitrella patens	1e-58	195	250	41.20
PP00156G00440	Physcomitrella patens	4e-57	191	290	37.93
PP00156G00420	Physcomitrella patens	4e-57	191	290	37.93
ATR_00019G03580	Amborella trichopoda	2e-56	185	145	59.31
AT2G36870	Arabidopsis thaliana	6e-56	189	255	41.96
PP00309G00200	Physcomitrella patens	7e-56	186	229	43.23
PP00486G00100	Physcomitrella patens	2e-55	187	237	41.77
PP00486G00080	Physcomitrella patens	2e-55	187	237	41.77
OS03G01800	Oryza sativa	3e-54	184	257	41.63
PP00410G00130	Physcomitrella patens	6e-54	183	246	40.24
PP00019G00220	Physcomitrella patens	2e-53	181	246	39.43
PP00081G01240	Physcomitrella patens	4e-53	181	288	36.81
ATR_00013G00910	Amborella trichopoda	9e-53	178	221	43.44
OS07G29750	Oryza sativa	1e-52	180	261	40.61
ATR_00024G00080	Amborella trichopoda	2e-52	180	254	38.98
OS10G02770	Oryza sativa	2e-52	181	263	37.64
ATR_00082G00420	Amborella trichopoda	4e-52	178	230	43.04
AT3G44990	Arabidopsis thaliana	2e-51	176	299	37.12
ATR_00026G01150	Amborella trichopoda	4e-51	172	151	52.32
OS06G13040	Oryza sativa	6e-51	176	262	39.31
OS10G39840	Oryza sativa	1e-50	175	257	39.30
AT1G32170	Arabidopsis thaliana	1e-50	176	288	34.38
PP00074G00080	Physcomitrella patens	6e-50	176	252	38.10
PP00011G01530	Physcomitrella patens	9e-50	172	284	35.56
PP00005G00910	Physcomitrella patens	7e-49	173	252	36.11
AT1G14720	Arabidopsis thaliana	1e-48	171	257	37.74
OS03G13570	Oryza sativa	1e-47	168	281	34.88
AT1G10550	Arabidopsis thaliana	9e-47	165	255	37.25
OS02G57770	Oryza sativa	1e-46	165	233	40.34
OS09G23220	Oryza sativa	2e-46	164	262	36.64
PP00141G00620	Physcomitrella patens	4e-46	162	285	36.14
AT2G01850	Arabidopsis thaliana	1e-45	162	266	35.34
OS03G63760	Oryza sativa	4e-43	156	260	32.69
OS02G03550	Oryza sativa	4e-43	156	246	34.55
ATR_00048G00580	Amborella trichopoda	1e-42	153	223	37.67
AT4G18990	Arabidopsis thaliana	1e-42	155	263	34.22
AT3G48580	Arabidopsis thaliana	2e-40	147	233	37.77
PP00089G00910	Physcomitrella patens	3e-40	147	253	36.76
PP00089G00960	Physcomitrella patens	1e-39	144	152	46.05
PP00048G00500	Physcomitrella patens	1e-38	143	252	34.52
OS10G42670	Oryza sativa	7e-37	139	270	32.96
PP00346G00070	Physcomitrella patens	5e-35	135	249	33.73
OS02G46910	Oryza sativa	3e-34	132	188	38.30
ATR_00062G00030	Amborella trichopoda	1e-25	103	98	55.10
ATR_00337G00020	Amborella trichopoda	3e-25	102	109	51.38
ATR_00062G00010	Amborella trichopoda	5e-23	97.8	85	60.00
ATR_00069G00950	Amborella trichopoda	6e-21	93.2	187	30.48
ATR_00055G01550	Amborella trichopoda	4e-19	85.1	110	40.91
PP00353G00180	Physcomitrella patens	2e-17	82.8	168	32.74
OS03G02610	Oryza sativa	1e-16	82.0	180	33.89
ATR_01729G00020	Amborella trichopoda	2e-16	76.6	63	55.56
PP00002G02710	Physcomitrella patens	2e-16	76.3	75	49.33
YLR213C	Saccharomyces cerevisiae strain S288C	5e-16	81.3	190	35.79
PP00024G01140	Physcomitrella patens	6e-16	81.6	164	34.76
PP00037G01500	Physcomitrella patens	8e-16	81.3	172	27.33
ATR_00065G01730	Amborella trichopoda	3e-13	68.2	52	61.54
ATR_00004G02620	Amborella trichopoda	4e-12	65.1	53	50.94
YGR189C	Saccharomyces cerevisiae strain S288C	6e-12	69.3	178	32.02
OS04G53950	Oryza sativa	9e-10	62.4	48	60.42

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment