Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G30720	Arabidopsis thaliana	0.0	1079	528	100.00
AT1G30730	Arabidopsis thaliana	0.0	855	528	80.87
AT1G34575	Arabidopsis thaliana	0.0	544	530	54.34
AT1G30710	Arabidopsis thaliana	0.0	538	530	53.58
AT2G34810	Arabidopsis thaliana	1e-176	516	515	50.68
AT1G30700	Arabidopsis thaliana	2e-167	492	505	52.08
AT4G20840	Arabidopsis thaliana	3e-165	487	501	50.30
AT4G20800	Arabidopsis thaliana	4e-160	473	499	49.70
AT1G26420	Arabidopsis thaliana	4e-157	466	531	47.46
AT1G26390	Arabidopsis thaliana	8e-157	465	504	49.21
AT1G11770	Arabidopsis thaliana	1e-156	465	527	46.87
AT1G26410	Arabidopsis thaliana	2e-155	462	503	48.71
AT1G26380	Arabidopsis thaliana	7e-155	460	528	47.35
AT1G01980	Arabidopsis thaliana	9e-151	450	507	47.93
AT1G26400	Arabidopsis thaliana	3e-150	448	529	45.75
AT5G44400	Arabidopsis thaliana	8e-150	447	532	45.30
AT4G20830	Arabidopsis thaliana	1e-146	440	501	48.30
AT2G34790	Arabidopsis thaliana	2e-145	436	527	44.40
AT5G44390	Arabidopsis thaliana	7e-145	435	522	45.02
AT1G30760	Arabidopsis thaliana	2e-141	426	476	46.43
AT1G30740	Arabidopsis thaliana	3e-140	422	517	46.62
AT5G44380	Arabidopsis thaliana	4e-138	417	532	45.86
AT4G20820	Arabidopsis thaliana	4e-134	407	519	43.35
AT5G44440	Arabidopsis thaliana	5e-133	404	531	43.50
AT5G44360	Arabidopsis thaliana	4e-130	396	503	44.14
AT5G44410	Arabidopsis thaliana	1e-125	385	536	43.47
AT4G20860	Arabidopsis thaliana	1e-125	385	462	43.29
OS06G35700	Oryza sativa	4e-125	384	507	44.77
OS06G35650	Oryza sativa	9e-123	377	504	43.45
OS06G35590	Oryza sativa	9e-122	375	487	44.35
ATR_00032G02440	Amborella trichopoda	2e-117	365	532	41.54
ATR_00032G02430	Amborella trichopoda	3e-117	363	507	43.59
OS06G35560	Oryza sativa	4e-117	363	511	41.88
OS02G14090	Oryza sativa	1e-115	360	515	40.97
OS06G35630	Oryza sativa	5e-114	355	536	42.35
OS06G35660	Oryza sativa	1e-111	348	539	41.93
ATR_00038G01030	Amborella trichopoda	9e-110	344	493	39.55
ATR_00018G00570	Amborella trichopoda	1e-106	335	480	39.38
ATR_00038G01000	Amborella trichopoda	1e-105	334	480	38.96
OS08G06170	Oryza sativa	6e-103	326	487	41.27
OS11G30310	Oryza sativa	1e-97	313	543	37.75
OS08G06190	Oryza sativa	7e-97	311	489	39.47
OS08G25490	Oryza sativa	2e-86	283	492	38.41
OS08G06180	Oryza sativa	5e-65	221	346	38.15
ATR_00038G01020	Amborella trichopoda	6e-36	140	221	37.56
PP00128G00550	Physcomitrella patens	7e-35	140	454	27.31
RCC4223.05g04340	Picochlorum_RCC4223	2e-27	119	473	25.79
RCC4223.12g02580	Picochlorum_RCC4223	4e-25	113	460	27.39
PI00G58120	Picochlorum sp. SENEW3 (SE3)	1e-24	112	463	27.86
ATR_00038G01010	Amborella trichopoda	3e-23	101	161	39.13
phs48790	Phytophtora sojae	8e-22	102	541	27.36
OS10G21690	Oryza sativa	1e-20	95.1	99	42.42
DDB_G0285535	Dictyostelium discoideum	2e-20	98.6	477	24.95
OS05G48480	Oryza sativa	2e-19	92.8	299	28.09
OS05G48440	Oryza sativa	2e-19	92.8	299	28.09
OS07G46740	Oryza sativa	2e-18	88.2	147	34.69
phs48910	Phytophtora sojae	6e-17	87.4	457	27.57
OS08G41350	Oryza sativa	2e-16	82.8	216	29.63
CNC64A_017G02020	Chlorella sp NC64A	3e-16	85.9	440	26.82
ATR_00743G00010	Amborella trichopoda	6e-16	78.2	69	53.62
emh483550	Emiliania huxleyi	4e-15	80.5	202	27.72
phs198240	Phytophtora sojae	2e-14	79.7	553	23.87
CNC64A_012G03740	Chlorella sp NC64A	7e-14	78.2	276	30.80
DDB_G0275585	Dictyostelium discoideum	2e-13	76.3	189	29.63
phs198140	Phytophtora sojae	5e-13	75.1	527	23.53
phs198120	Phytophtora sojae	5e-13	75.1	527	23.53
AC00G05820	Asterochloris sp. Cgr-DA1pho v2.0	1e-12	73.2	360	23.61
emh608850	Emiliania huxleyi	2e-12	73.6	205	30.73
VC00G71470	Volvox carteri	2e-12	73.2	181	28.73
phs14570	Phytophtora sojae	5e-12	72.0	532	22.56
phs377830	Phytophtora sojae	2e-11	70.1	555	22.52
ES0592G00010	Ectocarpus siliculosus	4e-11	69.7	159	32.70
emh416000	Emiliania huxleyi	1e-10	68.9	169	31.36
emh597980	Emiliania huxleyi	1e-10	68.9	169	31.36
DDB_G0269576	Dictyostelium discoideum	2e-10	67.4	177	27.12
VC00G71480	Volvox carteri	8e-10	65.1	260	24.62
CNC64A_016G01460	Chlorella sp NC64A	9e-10	64.7	201	26.87
emh513910	Emiliania huxleyi	2e-09	64.7	152	25.66
FC001G09800	Fragilariopsis cylindrus	2e-09	63.5	190	27.37
ccr141400	Chondrus crispus	4e-09	63.5	163	30.06
emh493500	Emiliania huxleyi	5e-09	62.4	224	25.89
AA0034G00640	Aureococcus anophagefferens	6e-09	62.4	181	29.83
emh599240	Emiliania huxleyi	7e-09	62.8	169	34.91
DDB_G0283303	Dictyostelium discoideum	9e-09	61.6	227	27.31
phs257230	Phytophtora sojae	1e-08	61.6	267	25.84
DDB_G0289697	Dictyostelium discoideum	1e-08	61.6	185	29.19
emh439910	Emiliania huxleyi	1e-08	62.0	197	32.99
CR11G03780	Chlamydomonas reinhardtii	1e-08	61.2	129	30.23
OS01G42990	Oryza sativa	1e-08	61.2	93	36.56
phs13360	Phytophtora sojae	2e-08	60.1	205	27.80
ATR_00030G01000	Amborella trichopoda	7e-08	58.9	234	26.50
OS05G21140	Oryza sativa	2e-07	55.1	51	49.02
phs198220	Phytophtora sojae	2e-07	56.2	240	24.17
DDB_G0269892	Dictyostelium discoideum	4e-06	53.1	251	25.10
OS01G18230	Oryza sativa	6e-06	51.2	88	35.23
CNC64A_017G01100	Chlorella sp NC64A	9e-06	52.8	204	26.96

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment