Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G22170	Arabidopsis thaliana	0.0	697	335	100.00
AT1G78050	Arabidopsis thaliana	5e-179	506	331	76.13
ATR_00010G01880	Amborella trichopoda	3e-171	487	255	87.84
OS02G51590	Oryza sativa	2e-167	477	337	70.33
PP00081G01170	Physcomitrella patens	9e-140	407	248	75.00
PP00023G01230	Physcomitrella patens	4e-139	405	313	61.66
PP00189G00030	Physcomitrella patens	1e-98	300	212	66.98
OS06G11960	Oryza sativa	2e-79	246	139	81.29
PP00009G01530	Physcomitrella patens	6e-61	203	240	41.67
PP00211G00150	Physcomitrella patens	8e-60	201	226	44.69
SPAC26F1.06	Schizosaccharomyces pombe	5e-53	180	232	41.81
DDB_G0285311	Dictyostelium discoideum	2e-52	179	242	40.91
TP04G03570	Thalassiosira pseudonana	9e-52	179	280	39.64
PTI_04G02180	Phaeodactylum tricornutum	2e-50	175	246	40.65
Naga_100011g26	Nannochloropsis gaditana	3e-50	176	305	36.39
PTI_31G00620	Phaeodactylum tricornutum	1e-49	174	286	34.62
FC014G02730	Fragilariopsis cylindrus	5e-49	171	269	37.55
AA0072G00010	Aureococcus anophagefferens	1e-48	171	244	38.52
FC006G03690	Fragilariopsis cylindrus	1e-48	169	242	37.60
TP05G05540	Thalassiosira pseudonana	9e-48	169	238	38.24
phs295220	Phytophtora sojae	1e-47	168	242	40.08
FBgn0011270	Drosophila melanogaster	4e-47	167	252	37.70
emh287490	Emiliania huxleyi	2e-46	166	289	34.60
YKL152C	Saccharomyces cerevisiae strain S288C	2e-46	164	242	39.26
pte182160	Paramecium tetraurelia	3e-46	164	240	37.50
AC00G94640	Asterochloris sp. Cgr-DA1pho v2.0	4e-46	170	262	40.08
pte283150	Paramecium tetraurelia	4e-46	163	240	37.50
ENSMUSG00000020475	Mus musculus	4e-45	160	240	38.33
Naga_100069g1	Nannochloropsis gaditana	1e-44	162	258	35.66
ENSG00000164708	Homo sapiens	1e-44	159	240	37.92
FBgn0014869	Drosophila melanogaster	2e-44	159	245	38.78
AA0001G04440	Aureococcus anophagefferens	3e-43	155	262	38.55
ES0006G00290	Ectocarpus siliculosus	4e-43	157	258	32.56
phs211590	Phytophtora sojae	1e-42	154	242	37.19
AA0016G00020	Aureococcus anophagefferens	2e-42	154	242	37.19
phs131520	Phytophtora sojae	3e-42	155	256	34.77
ES0254G00200	Ectocarpus siliculosus	1e-41	152	238	37.39
FC021G00150	Fragilariopsis cylindrus	2e-40	149	241	37.76
TP04G06310	Thalassiosira pseudonana	3e-39	144	237	37.13
ENSG00000172331	Homo sapiens	1e-37	140	246	32.52
ENSMUSG00000011752	Mus musculus	2e-37	140	240	36.25
ENSMUSG00000038871	Mus musculus	3e-37	139	246	32.11
PTI_04G04060	Phaeodactylum tricornutum	7e-37	142	250	34.00
emh435660	Emiliania huxleyi	7e-37	140	254	35.43
AA0004G02010	Aureococcus anophagefferens	2e-36	139	248	35.08
CR03G05670	Chlamydomonas reinhardtii	1e-35	140	242	34.71
ES0340G00120	Ectocarpus siliculosus	5e-35	136	252	32.14
FC042G01150	Fragilariopsis cylindrus	6e-35	132	241	32.37
AA0001G06260	Aureococcus anophagefferens	1e-34	132	257	34.24
AA0072G00020	Aureococcus anophagefferens	1e-34	131	209	36.84
VC00G28080	Volvox carteri	5e-34	135	303	31.68
TP08G02430	Thalassiosira pseudonana	1e-33	129	240	32.50
PTI_01G06220	Phaeodactylum tricornutum	3e-33	135	260	34.23
pte405980	Paramecium tetraurelia	3e-33	128	224	35.27
TP23G01130	Thalassiosira pseudonana	1e-32	126	243	32.10
emh235230	Emiliania huxleyi	2e-32	129	240	32.92
emh389710	Emiliania huxleyi	2e-32	129	240	32.92
AA0021G00220	Aureococcus anophagefferens	2e-32	125	241	33.20
PTI_03G00430	Phaeodactylum tricornutum	3e-32	129	270	32.22
FC006G05260	Fragilariopsis cylindrus	4e-32	127	244	32.79
FC006G02360	Fragilariopsis cylindrus	6e-32	124	231	33.33
ENSG00000226784	Homo sapiens	7e-32	125	243	34.57
ES0011G00470	Ectocarpus siliculosus	1e-31	127	301	30.56
emh687370	Emiliania huxleyi	4e-31	122	254	31.10
AA0009G01060	Aureococcus anophagefferens	6e-31	122	249	31.73
FC042G01140	Fragilariopsis cylindrus	7e-31	122	250	31.60
AA0021G00210	Aureococcus anophagefferens	1e-30	120	240	32.08
ES0122G00370	Ectocarpus siliculosus	8e-30	120	250	28.40
AA0028G00440	Aureococcus anophagefferens	1e-29	118	241	31.12
AA0298G00020	Aureococcus anophagefferens	4e-29	116	239	30.96
PTI_01G11510	Phaeodactylum tricornutum	4e-29	121	261	32.18
Naga_100050g24	Nannochloropsis gaditana	5e-29	121	249	31.33
PP00088G00720	Physcomitrella patens	6e-28	110	101	52.48
PTI_07G00920	Phaeodactylum tricornutum	7e-27	113	264	26.89
AA0005G05300	Aureococcus anophagefferens	8e-27	113	261	32.95
emh465660	Emiliania huxleyi	9e-27	112	237	32.49
AA0012G02320	Aureococcus anophagefferens	1e-26	110	241	28.63
emh372630	Emiliania huxleyi	1e-26	111	243	31.28
emh424240	Emiliania huxleyi	2e-26	110	216	33.33
FBgn0038957	Drosophila melanogaster	5e-25	106	265	27.55
AA0028G00450	Aureococcus anophagefferens	1e-24	103	239	30.54
AA0017G00750	Aureococcus anophagefferens	5e-24	107	250	32.40
YDL021W	Saccharomyces cerevisiae strain S288C	4e-23	101	268	29.48
emh173030	Emiliania huxleyi	5e-23	99.4	242	33.06
ES0011G00270	Ectocarpus siliculosus	8e-23	100	205	35.12
emh477620	Emiliania huxleyi	4e-22	101	251	27.09
emh58890	Emiliania huxleyi	9e-21	92.4	197	36.55
YOL056W	Saccharomyces cerevisiae strain S288C	1e-19	90.9	262	27.86
FC029G01760	Fragilariopsis cylindrus	1e-18	87.4	261	27.59
AA0118G00020	Aureococcus anophagefferens	5e-16	79.7	246	30.49
AA0003G03130	Aureococcus anophagefferens	6e-16	79.0	246	29.67
emh211200	Emiliania huxleyi	5e-15	74.7	120	37.50
emh419260	Emiliania huxleyi	5e-15	74.7	120	37.50
emh15580	Emiliania huxleyi	9e-15	73.9	68	48.53
CR10G09240	Chlamydomonas reinhardtii	2e-11	67.4	192	28.12
OS08G37140	Oryza sativa	4e-11	67.0	196	28.06
AT5G04120	Arabidopsis thaliana	4e-09	60.1	195	28.72
ES0148G00210	Ectocarpus siliculosus	5e-08	58.2	217	28.11
OS11G04320	Oryza sativa	6e-08	56.2	212	27.36
OS12G04120	Oryza sativa	7e-08	56.6	226	25.66
Naga_101136g1	Nannochloropsis gaditana	2e-07	54.3	57	49.12
PTI_27G01130	Phaeodactylum tricornutum	2e-07	55.5	217	28.57
PP00196G00200	Physcomitrella patens	4e-07	54.7	204	28.92
CR05G00450	Chlamydomonas reinhardtii	7e-07	54.7	139	30.22
FC007G00610	Fragilariopsis cylindrus	1e-06	53.9	137	32.12
CV00G19180	Coccomyxa subellipsoidea C-169	2e-06	52.4	211	26.07
ATR_00073G00510	Amborella trichopoda	2e-06	52.8	191	24.61
VC00G61250	Volvox carteri	8e-06	51.2	138	27.54

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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