Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G18650	Arabidopsis thaliana	1e-130	371	185	100.00
AT5G08000	Arabidopsis thaliana	7e-46	155	176	54.55
AT5G61130	Arabidopsis thaliana	1e-44	152	176	52.27
OS03G54910	Oryza sativa	1e-38	136	109	55.96
OS07G40940	Oryza sativa	2e-35	129	91	62.64
ATR_00110G01170	Amborella trichopoda	3e-34	122	93	59.14
AT4G13600	Arabidopsis thaliana	1e-31	120	173	41.62
OS01G55820	Oryza sativa	1e-31	119	90	57.78
OS03G30830	Oryza sativa	1e-30	115	94	57.45
AT2G03505	Arabidopsis thaliana	2e-29	112	94	53.19
PP00270G00470	Physcomitrella patens	5e-28	113	92	55.43
OS05G43690	Oryza sativa	1e-27	109	109	52.29
AT1G69295	Arabidopsis thaliana	2e-27	108	98	51.02
ATR_00013G02250	Amborella trichopoda	6e-27	106	109	43.12
OS02G29980	Oryza sativa	9e-27	105	104	49.04
PP00098G00250	Physcomitrella patens	4e-25	105	95	50.53
PP00218G00010	Physcomitrella patens	4e-25	105	92	50.00
AT2G16230	Arabidopsis thaliana	3e-24	102	93	47.31
ATR_00060G01250	Amborella trichopoda	4e-24	102	110	43.64
AT1G13830	Arabidopsis thaliana	1e-23	98.2	78	52.56
AT1G26450	Arabidopsis thaliana	1e-23	98.2	92	48.91
AT4G05430	Arabidopsis thaliana	9e-23	94.4	100	43.00
AT4G34480	Arabidopsis thaliana	1e-22	98.6	89	48.31
AT5G24318	Arabidopsis thaliana	3e-22	97.1	95	43.16
AT2G01630	Arabidopsis thaliana	3e-22	97.4	98	43.88
ATR_00021G01160	Amborella trichopoda	4e-22	92.8	81	50.62
OS03G61780	Oryza sativa	4e-22	97.4	94	52.13
OS01G44090	Oryza sativa	4e-22	95.1	91	50.55
OS05G50490	Oryza sativa	6e-22	94.4	101	47.52
OS07G35480	Oryza sativa	1e-21	96.3	86	46.51
PP00012G01450	Physcomitrella patens	1e-21	92.0	118	41.53
OS02G53200	Oryza sativa	2e-21	95.5	88	47.73
PP00001G00220	Physcomitrella patens	2e-21	95.1	98	43.88
AT1G11820	Arabidopsis thaliana	3e-21	94.7	106	41.51
ATR_00059G00370	Amborella trichopoda	4e-21	94.0	88	46.59
OS01G53750	Oryza sativa	4e-21	94.0	98	43.88
OS03G12140	Oryza sativa	6e-21	94.0	96	41.67
OS03G46660	Oryza sativa	6e-21	94.0	85	47.06
PP00150G00090	Physcomitrella patens	7e-21	94.0	93	45.16
OS08G14700	Oryza sativa	7e-21	94.0	73	52.05
OS11G47820	Oryza sativa	8e-21	93.2	86	45.35
ATR_00037G01070	Amborella trichopoda	1e-20	92.8	90	46.67
AT4G26830	Arabidopsis thaliana	1e-20	92.4	91	43.96
AT2G30933	Arabidopsis thaliana	2e-20	90.1	126	39.68
ATR_00086G00620	Amborella trichopoda	2e-20	89.7	91	45.05
ATR_00002G00460	Amborella trichopoda	2e-20	90.9	86	43.02
ATR_00044G01250	Amborella trichopoda	3e-20	89.4	92	41.30
AT4G09462	Arabidopsis thaliana	3e-20	87.0	103	37.86
ATR_00112G00280	Amborella trichopoda	3e-20	91.7	87	45.98
AT5G67460	Arabidopsis thaliana	3e-20	90.5	88	47.73
OS07G35510	Oryza sativa	3e-20	92.4	109	38.53
ATR_00056G01290	Amborella trichopoda	3e-20	92.0	115	39.13
AT3G55430	Arabidopsis thaliana	3e-20	91.3	88	37.50
OS06G45450	Oryza sativa	4e-20	89.0	90	44.44
AT1G79480	Arabidopsis thaliana	5e-20	90.1	88	42.05
AT4G09465	Arabidopsis thaliana	5e-20	86.3	107	36.45
AT4G09464	Arabidopsis thaliana	5e-20	86.3	107	36.45
AT4G09467	Arabidopsis thaliana	5e-20	86.3	107	36.45
AT2G05790	Arabidopsis thaliana	6e-20	90.9	87	47.13
PP00301G00080	Physcomitrella patens	8e-20	87.8	111	40.54
ATR_00068G00910	Amborella trichopoda	9e-20	90.5	88	47.73
AT4G09466	Arabidopsis thaliana	1e-19	85.1	107	35.51
ATR_00164G00170	Amborella trichopoda	1e-19	89.7	95	48.42
PP00051G00310	Physcomitrella patens	1e-19	90.1	88	47.73
ATR_00012G01410	Amborella trichopoda	2e-19	89.7	88	42.05
ATR_00045G00710	Amborella trichopoda	4e-19	89.4	85	48.24
OS07G35520	Oryza sativa	4e-19	89.0	86	45.35
AT1G66250	Arabidopsis thaliana	6e-19	88.2	118	36.44
ATR_00009G03570	Amborella trichopoda	8e-19	87.4	82	43.90
AT3G58100	Arabidopsis thaliana	9e-19	84.3	117	33.33
AT5G63240	Arabidopsis thaliana	1e-18	82.8	97	36.08
AT1G29380	Arabidopsis thaliana	1e-18	85.5	85	47.06
AT4G09090	Arabidopsis thaliana	1e-18	82.4	109	34.86
PP00389G00270	Physcomitrella patens	2e-18	86.3	100	42.00
AT1G66870	Arabidopsis thaliana	4e-18	80.9	103	35.92
AT2G39640	Arabidopsis thaliana	5e-18	85.9	96	36.46
AT3G13560	Arabidopsis thaliana	5e-18	85.5	100	42.00
ATR_00092G00140	Amborella trichopoda	6e-18	82.0	86	44.19
AT5G55180	Arabidopsis thaliana	8e-18	84.7	80	46.25
OS07G35560	Oryza sativa	1e-17	84.7	86	45.35
OS07G35350	Oryza sativa	2e-17	84.0	92	40.22
AT5G35740	Arabidopsis thaliana	2e-17	79.0	100	39.00
OS03G25790	Oryza sativa	8e-17	82.0	127	39.37
AT1G09460	Arabidopsis thaliana	8e-17	80.5	95	43.16
OS10G20650	Oryza sativa	9e-17	80.5	86	45.35
AT1G66852	Arabidopsis thaliana	1e-16	77.0	103	36.89
OS06G34660	Oryza sativa	2e-16	78.2	105	40.95
OS07G32600	Oryza sativa	2e-16	80.9	109	35.78
PP00006G00160	Physcomitrella patens	3e-16	80.5	86	45.35
OS01G14140	Oryza sativa	3e-16	76.3	85	41.18
AT2G04910	Arabidopsis thaliana	6e-16	75.1	90	38.89
OS07G43940	Oryza sativa	7e-16	76.6	113	39.82
ATR_00217G00090	Amborella trichopoda	7e-16	75.1	84	44.05
ATR_00028G00630	Amborella trichopoda	1e-15	74.3	91	39.56
AT4G29360	Arabidopsis thaliana	1e-15	78.6	85	42.35
AT1G66855	Arabidopsis thaliana	2e-15	73.2	103	32.04
PP00132G00380	Physcomitrella patens	4e-15	74.3	108	36.11
AT5G63250	Arabidopsis thaliana	6e-15	72.8	97	34.02
AT5G63230	Arabidopsis thaliana	6e-15	72.0	84	36.90
AT2G43670	Arabidopsis thaliana	1e-14	71.6	96	33.33
AT5G63225	Arabidopsis thaliana	2e-14	70.9	88	36.36
AT5G56590	Arabidopsis thaliana	3e-14	74.3	108	37.96
AT3G07320	Arabidopsis thaliana	5e-14	73.6	92	39.13
ATR_00117G00360	Amborella trichopoda	2e-13	72.0	91	41.76
OS07G38930	Oryza sativa	2e-13	71.6	97	35.05
PP00325G00040	Physcomitrella patens	3e-13	70.5	83	37.35
PP00085G00580	Physcomitrella patens	3e-13	71.2	86	45.35
AT4G16165	Arabidopsis thaliana	3e-13	67.4	103	31.07
ATR_00028G00620	Amborella trichopoda	7e-13	66.6	113	30.09
OS09G32550	Oryza sativa	8e-13	70.1	93	39.78
PP00138G00240	Physcomitrella patens	1e-12	69.3	86	39.53
PP00312G00180	Physcomitrella patens	2e-12	69.3	82	35.37
ATR_00117G00390	Amborella trichopoda	2e-12	69.3	93	37.63
AT2G43660	Arabidopsis thaliana	1e-11	62.8	88	31.82
AT5G53600	Arabidopsis thaliana	2e-11	62.4	85	34.12
AT5G53610	Arabidopsis thaliana	3e-11	62.0	84	35.71
AT1G78520	Arabidopsis thaliana	4e-11	61.6	89	29.21
PP00054G00730	Physcomitrella patens	6e-11	64.3	84	40.48
PP00014G00160	Physcomitrella patens	2e-10	62.8	96	37.50
AT3G23770	Arabidopsis thaliana	4e-10	62.0	89	34.83
PP00197G00340	Physcomitrella patens	9e-10	60.8	84	39.29
OS08G04140	Oryza sativa	1e-09	57.4	92	33.70
OS03G62860	Oryza sativa	1e-09	60.1	89	34.83
AT3G28250	Arabidopsis thaliana	4e-09	55.8	78	32.05
AT2G42930	Arabidopsis thaliana	4e-09	55.8	80	35.00
AT4G14080	Arabidopsis thaliana	1e-08	57.8	89	34.83
OS08G23720	Oryza sativa	1e-08	57.4	104	32.69
ATR_00104G00300	Amborella trichopoda	1e-08	57.0	109	32.11
OS02G04670	Oryza sativa	2e-08	56.6	86	39.53
ATR_00022G02030	Amborella trichopoda	5e-08	55.5	94	34.04
PP00157G00080	Physcomitrella patens	2e-07	53.9	75	40.00
PP00110G00260	Physcomitrella patens	3e-07	50.8	82	37.80
OS09G09980	Oryza sativa	4e-07	52.8	84	32.14
OS06G39060	Oryza sativa	4e-07	52.8	86	36.05
ATR_00061G01310	Amborella trichopoda	7e-07	52.0	84	35.71
AT5G64790	Arabidopsis thaliana	7e-07	52.0	93	35.48
OS08G12800	Oryza sativa	9e-07	51.6	86	37.21
AT4G31140	Arabidopsis thaliana	1e-06	51.6	106	30.19
AT3G24330	Arabidopsis thaliana	1e-06	51.6	109	31.19
AT4G17180	Arabidopsis thaliana	1e-06	51.2	104	30.77
MRCC299_09G03220	Micromonas sp RCC299	2e-06	50.4	88	28.41
PP00162G00140	Physcomitrella patens	4e-06	50.1	89	29.21
OS03G27980	Oryza sativa	5e-06	49.7	97	34.02
ATR_00007G00030	Amborella trichopoda	8e-06	48.9	96	31.25

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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