Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G09560	Arabidopsis thaliana	2e-154	434	220	100.00
OS05G19670	Oryza sativa	4e-97	289	200	68.00
AT3G62020	Arabidopsis thaliana	2e-94	282	197	67.51
OS01G14670	Oryza sativa	5e-94	281	197	69.54
ATR_00045G01680	Amborella trichopoda	2e-93	280	198	65.15
AT1G02335	Arabidopsis thaliana	4e-92	276	220	58.18
OS01G72290	Oryza sativa	3e-89	269	219	60.27
AT5G26700	Arabidopsis thaliana	8e-87	263	210	59.52
OS03G44880	Oryza sativa	6e-86	261	220	59.09
AT3G05930	Arabidopsis thaliana	2e-84	257	199	64.32
OS01G18170	Oryza sativa	4e-81	248	197	63.96
OS01G72300	Oryza sativa	2e-72	226	235	51.06
OS02G29000	Oryza sativa	8e-69	216	217	52.07
ATR_00089G00770	Amborella trichopoda	2e-68	216	213	51.64
OS02G29020	Oryza sativa	4e-68	215	196	54.59
ATR_00089G00670	Amborella trichopoda	8e-68	214	214	51.40
AT1G18970	Arabidopsis thaliana	8e-68	214	213	53.05
ATR_00089G00660	Amborella trichopoda	1e-66	211	198	55.05
ATR_00067G00020	Amborella trichopoda	2e-66	211	210	50.48
OS12G05870	Oryza sativa	4e-66	210	223	49.78
ATR_00794G00010	Amborella trichopoda	8e-66	209	217	51.15
AT1G18980	Arabidopsis thaliana	9e-66	209	207	52.17
OS08G09040	Oryza sativa	3e-65	207	219	50.23
ATR_00089G00680	Amborella trichopoda	4e-65	208	201	53.23
PP00338G00270	Physcomitrella patens	6e-65	207	211	49.76
OS08G08970	Oryza sativa	8e-65	207	195	52.31
OS03G59010	Oryza sativa	2e-64	206	217	49.31
OS12G05860	Oryza sativa	3e-64	205	223	50.22
ATR_00002G03050	Amborella trichopoda	5e-64	204	194	52.58
OS08G08960	Oryza sativa	5e-64	204	198	52.53
OS08G09020	Oryza sativa	6e-64	204	218	50.92
OS08G09060	Oryza sativa	8e-64	204	218	50.46
OS12G05840	Oryza sativa	1e-63	204	220	50.45
AT5G39150	Arabidopsis thaliana	2e-63	203	217	48.85
OS08G08990	Oryza sativa	3e-63	202	218	49.54
AT5G39120	Arabidopsis thaliana	5e-63	202	217	48.85
OS08G08980	Oryza sativa	6e-63	202	196	50.51
AT5G39180	Arabidopsis thaliana	1e-62	201	217	48.39
AT5G39110	Arabidopsis thaliana	1e-62	201	215	50.23
OS08G09000	Oryza sativa	3e-62	200	197	52.79
OS08G09010	Oryza sativa	6e-62	199	197	52.28
OS08G13440	Oryza sativa	2e-61	198	197	51.27
OS08G08920	Oryza sativa	3e-61	197	214	50.00
OS04G52720	Oryza sativa	6e-61	197	200	52.00
AT3G05950	Arabidopsis thaliana	1e-60	196	210	51.90
PP00086G00130	Physcomitrella patens	2e-60	196	217	51.61
OS08G09080	Oryza sativa	3e-60	195	198	51.52
AT5G39160	Arabidopsis thaliana	1e-59	193	218	47.25
PP00021G01310	Physcomitrella patens	1e-59	193	204	49.51
PP00021G01280	Physcomitrella patens	1e-59	193	204	49.51
AT5G39190	Arabidopsis thaliana	2e-59	193	218	47.25
AT5G39130	Arabidopsis thaliana	3e-59	192	199	49.75
PP00337G00050	Physcomitrella patens	1e-58	190	213	47.89
AT4G14630	Arabidopsis thaliana	2e-58	190	199	50.25
PP00273G00230	Physcomitrella patens	3e-58	189	213	48.83
PP00068G00130	Physcomitrella patens	4e-58	192	199	50.25
PP00068G00160	Physcomitrella patens	4e-58	192	199	50.25
PP00068G00080	Physcomitrella patens	4e-58	192	199	50.25
PP00082G00010	Physcomitrella patens	4e-57	187	218	45.87
ATR_00154G00220	Amborella trichopoda	4e-57	186	176	54.55
AT5G38960	Arabidopsis thaliana	5e-57	186	208	50.00
PP00082G00020	Physcomitrella patens	6e-57	186	218	46.33
AT5G38910	Arabidopsis thaliana	2e-56	185	219	46.58
OS03G58980	Oryza sativa	3e-56	185	206	46.60
AT5G38940	Arabidopsis thaliana	8e-56	183	198	49.49
OS01G50900	Oryza sativa	2e-55	183	193	48.70
AT5G38930	Arabidopsis thaliana	3e-55	182	199	49.25
OS12G05880	Oryza sativa	4e-55	181	186	50.00
OS03G48750	Oryza sativa	5e-55	181	196	49.49
OS03G48780	Oryza sativa	9e-55	181	219	45.21
AT3G04170	Arabidopsis thaliana	4e-54	179	218	47.71
OS03G48770	Oryza sativa	5e-54	179	214	45.33
OS03G48760	Oryza sativa	2e-53	177	212	45.75
AT3G04200	Arabidopsis thaliana	8e-53	176	216	45.83
ATR_00089G00720	Amborella trichopoda	2e-51	170	153	57.52
AT3G04150	Arabidopsis thaliana	1e-50	171	227	41.85
ATR_00154G00210	Amborella trichopoda	7e-50	167	176	48.86
AT3G04180	Arabidopsis thaliana	3e-49	167	196	45.92
AT3G04190	Arabidopsis thaliana	3e-49	166	196	45.92
OS05G10830	Oryza sativa	7e-48	163	201	42.79
ATR_00154G00250	Amborella trichopoda	8e-48	162	160	52.50
ATR_00074G00120	Amborella trichopoda	6e-47	160	211	41.23
OS08G35750	Oryza sativa	2e-45	156	217	40.09
ATR_00089G00690	Amborella trichopoda	2e-44	152	177	48.02
OS02G32980	Oryza sativa	1e-43	152	202	39.11
ATR_00114G00120	Amborella trichopoda	4e-43	151	209	42.11
AT1G74820	Arabidopsis thaliana	1e-42	149	188	41.49
ATR_00110G00020	Amborella trichopoda	2e-42	149	150	50.67
AT3G10080	Arabidopsis thaliana	9e-42	147	202	39.11
ATR_00024G02410	Amborella trichopoda	3e-40	142	183	44.26
AT1G72610	Arabidopsis thaliana	5e-40	142	164	46.34
OS03G08150	Oryza sativa	4e-39	140	215	36.74
AT1G10460	Arabidopsis thaliana	5e-39	140	199	38.69
AT5G61750	Arabidopsis thaliana	8e-39	139	182	40.11
ATR_00016G02910	Amborella trichopoda	9e-39	140	196	39.29
PP00156G00260	Physcomitrella patens	1e-38	139	225	39.56
AT5G39100	Arabidopsis thaliana	1e-38	136	129	51.16
PP00206G00600	Physcomitrella patens	3e-38	137	219	40.18
PP00097G00260	Physcomitrella patens	1e-37	136	177	46.33
AT5G20630	Arabidopsis thaliana	5e-37	134	205	40.00
OS08G35760	Oryza sativa	3e-36	132	188	40.96
ATR_00040G00700	Amborella trichopoda	4e-36	132	223	37.22
OS09G39530	Oryza sativa	5e-35	129	204	37.25
PP00010G01540	Physcomitrella patens	1e-34	129	211	34.12
PP00097G00270	Physcomitrella patens	1e-33	125	215	35.81
ATR_00165G00310	Amborella trichopoda	4e-32	121	196	38.27
OS11G33110	Oryza sativa	5e-32	122	178	39.33
PP00039G00620	Physcomitrella patens	6e-32	120	210	36.67
ATR_00121G00450	Amborella trichopoda	2e-31	120	215	35.81
ATR_00121G00440	Amborella trichopoda	1e-30	118	144	42.36
ATR_00040G00690	Amborella trichopoda	1e-30	117	194	37.11
OS09G39520	Oryza sativa	1e-30	117	221	37.10
ATR_00121G00460	Amborella trichopoda	7e-30	115	144	41.67
ATR_00121G00410	Amborella trichopoda	4e-29	113	144	40.97
OS09G39510	Oryza sativa	3e-28	112	198	40.91
OS03G58990	Oryza sativa	3e-27	107	170	40.00
ATR_00002G01360	Amborella trichopoda	2e-26	105	146	41.10
ATR_00121G00420	Amborella trichopoda	3e-26	105	144	40.28
ATR_00089G00700	Amborella trichopoda	3e-22	92.8	99	48.48
ATR_00040G00850	Amborella trichopoda	2e-19	87.0	134	38.06
ATR_02363G00010	Amborella trichopoda	9e-17	79.7	120	38.33
ES0128G00210	Ectocarpus siliculosus	3e-16	79.0	120	35.83
ES0731G00010	Ectocarpus siliculosus	3e-16	79.0	120	35.83
PP00009G02260	Physcomitrella patens	5e-16	76.3	123	31.71
ES0128G00240	Ectocarpus siliculosus	7e-16	77.4	120	35.83
ES0118G00190	Ectocarpus siliculosus	4e-15	75.5	120	35.00
ES0128G00170	Ectocarpus siliculosus	4e-14	72.4	116	32.76
ATR_03649G00010	Amborella trichopoda	2e-13	67.8	70	50.00
AT5G38950	Arabidopsis thaliana	3e-13	67.4	62	53.23
PP00027G00160	Physcomitrella patens	3e-12	66.6	72	43.06
ATR_00033G01940	Amborella trichopoda	5e-12	64.7	130	34.62
AC00G25980	Asterochloris sp. Cgr-DA1pho v2.0	5e-12	66.2	168	30.36
PP00149G00830	Physcomitrella patens	9e-12	65.5	106	35.85
ATR_00072G01040	Amborella trichopoda	1e-11	62.0	65	50.77
CV00G32770	Coccomyxa subellipsoidea C-169	8e-11	62.8	101	32.67
AC00G26230	Asterochloris sp. Cgr-DA1pho v2.0	7e-08	55.5	127	33.07
HE0000G09800	Helicosporidium sp.	9e-07	51.6	107	28.04
ATR_00121G00470	Amborella trichopoda	4e-06	47.8	82	35.37

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment