|
CNC64A_783G00010 |
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'AT1G07110' => array(
'gene_id' => 'AT1G07110',
'e_value' => '0.0',
'bit_score' => '1536',
'alignment_length' => '745',
'identity_percentage' => '100.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01380' => array(
'gene_id' => 'ATR_00007G01380',
'e_value' => '0.0',
'bit_score' => '1143',
'alignment_length' => '752',
'identity_percentage' => '76.06',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS05G07130' => array(
'gene_id' => 'OS05G07130',
'e_value' => '0.0',
'bit_score' => '1059',
'alignment_length' => '740',
'identity_percentage' => '72.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00242G00370' => array(
'gene_id' => 'PP00242G00370',
'e_value' => '0.0',
'bit_score' => '862',
'alignment_length' => '787',
'identity_percentage' => '59.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00215G00480' => array(
'gene_id' => 'PP00215G00480',
'e_value' => '0.0',
'bit_score' => '855',
'alignment_length' => '772',
'identity_percentage' => '59.84',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00235G00510' => array(
'gene_id' => 'PP00235G00510',
'e_value' => '0.0',
'bit_score' => '814',
'alignment_length' => '805',
'identity_percentage' => '55.16',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00414G00150' => array(
'gene_id' => 'PP00414G00150',
'e_value' => '0.0',
'bit_score' => '808',
'alignment_length' => '752',
'identity_percentage' => '57.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS03G18310' => array(
'gene_id' => 'OS03G18310',
'e_value' => '0.0',
'bit_score' => '785',
'alignment_length' => '468',
'identity_percentage' => '80.56',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.06g00990' => array(
'gene_id' => 'RCC4223.06g00990',
'e_value' => '4e-133',
'bit_score' => '414',
'alignment_length' => '419',
'identity_percentage' => '49.64',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'CV00G87950' => array(
'gene_id' => 'CV00G87950',
'e_value' => '2e-132',
'bit_score' => '408',
'alignment_length' => '400',
'identity_percentage' => '52.50',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'PI00G64210' => array(
'gene_id' => 'PI00G64210',
'e_value' => '2e-132',
'bit_score' => '412',
'alignment_length' => '419',
'identity_percentage' => '49.88',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CR16G12950' => array(
'gene_id' => 'CR16G12950',
'e_value' => '1e-125',
'bit_score' => '399',
'alignment_length' => '450',
'identity_percentage' => '45.78',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ccr56200' => array(
'gene_id' => 'ccr56200',
'e_value' => '2e-124',
'bit_score' => '387',
'alignment_length' => '408',
'identity_percentage' => '47.79',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'VC00G96280' => array(
'gene_id' => 'VC00G96280',
'e_value' => '6e-121',
'bit_score' => '392',
'alignment_length' => '411',
'identity_percentage' => '49.15',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR16G02280' => array(
'gene_id' => 'CR16G02280',
'e_value' => '8e-120',
'bit_score' => '392',
'alignment_length' => '436',
'identity_percentage' => '46.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'pte157060' => array(
'gene_id' => 'pte157060',
'e_value' => '9e-120',
'bit_score' => '374',
'alignment_length' => '419',
'identity_percentage' => '43.44',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100004g69' => array(
'gene_id' => 'Naga_100004g69',
'e_value' => '5e-119',
'bit_score' => '375',
'alignment_length' => '407',
'identity_percentage' => '45.45',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'pte98110' => array(
'gene_id' => 'pte98110',
'e_value' => '4e-118',
'bit_score' => '369',
'alignment_length' => '419',
'identity_percentage' => '42.96',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ES0099G00380' => array(
'gene_id' => 'ES0099G00380',
'e_value' => '5e-118',
'bit_score' => '368',
'alignment_length' => '404',
'identity_percentage' => '45.05',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CM14G00850' => array(
'gene_id' => 'CM14G00850',
'e_value' => '2e-117',
'bit_score' => '382',
'alignment_length' => '409',
'identity_percentage' => '45.23',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'gsu43500' => array(
'gene_id' => 'gsu43500',
'e_value' => '4e-117',
'bit_score' => '368',
'alignment_length' => '409',
'identity_percentage' => '46.21',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'AP00G63940' => array(
'gene_id' => 'AP00G63940',
'e_value' => '9e-116',
'bit_score' => '389',
'alignment_length' => '422',
'identity_percentage' => '48.34',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'gsu21500' => array(
'gene_id' => 'gsu21500',
'e_value' => '6e-114',
'bit_score' => '360',
'alignment_length' => '409',
'identity_percentage' => '45.97',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'pte383600' => array(
'gene_id' => 'pte383600',
'e_value' => '2e-113',
'bit_score' => '358',
'alignment_length' => '421',
'identity_percentage' => '41.33',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte648520' => array(
'gene_id' => 'pte648520',
'e_value' => '7e-113',
'bit_score' => '356',
'alignment_length' => '418',
'identity_percentage' => '42.82',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000158571' => array(
'gene_id' => 'ENSG00000158571',
'e_value' => '8e-113',
'bit_score' => '357',
'alignment_length' => '391',
'identity_percentage' => '47.31',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000170525' => array(
'gene_id' => 'ENSG00000170525',
'e_value' => '9e-112',
'bit_score' => '356',
'alignment_length' => '403',
'identity_percentage' => '46.40',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'TP02G06550' => array(
'gene_id' => 'TP02G06550',
'e_value' => '1e-110',
'bit_score' => '348',
'alignment_length' => '399',
'identity_percentage' => '44.11',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000026773' => array(
'gene_id' => 'ENSMUSG00000026773',
'e_value' => '6e-110',
'bit_score' => '352',
'alignment_length' => '403',
'identity_percentage' => '46.15',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00019295' => array(
'gene_id' => 'WBGene00019295',
'e_value' => '8e-109',
'bit_score' => '346',
'alignment_length' => '399',
'identity_percentage' => '45.11',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000114268' => array(
'gene_id' => 'ENSG00000114268',
'e_value' => '2e-108',
'bit_score' => '345',
'alignment_length' => '391',
'identity_percentage' => '46.29',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0027621' => array(
'gene_id' => 'FBgn0027621',
'e_value' => '2e-107',
'bit_score' => '350',
'alignment_length' => '402',
'identity_percentage' => '44.78',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'phs288590' => array(
'gene_id' => 'phs288590',
'e_value' => '1e-106',
'bit_score' => '350',
'alignment_length' => '411',
'identity_percentage' => '43.55',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G04850' => array(
'gene_id' => 'PTI_01G04850',
'e_value' => '3e-106',
'bit_score' => '343',
'alignment_length' => '477',
'identity_percentage' => '40.88',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'YJL155C' => array(
'gene_id' => 'YJL155C',
'e_value' => '3e-105',
'bit_score' => '336',
'alignment_length' => '410',
'identity_percentage' => '44.15',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0276253' => array(
'gene_id' => 'DDB_G0276253',
'e_value' => '6e-105',
'bit_score' => '337',
'alignment_length' => '410',
'identity_percentage' => '43.90',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00022456' => array(
'gene_id' => 'WBGene00022456',
'e_value' => '5e-102',
'bit_score' => '328',
'alignment_length' => '403',
'identity_percentage' => '45.16',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'OL01G00070' => array(
'gene_id' => 'OL01G00070',
'e_value' => '5e-102',
'bit_score' => '330',
'alignment_length' => '445',
'identity_percentage' => '42.47',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'OM_01G07100' => array(
'gene_id' => 'OM_01G07100',
'e_value' => '3e-101',
'bit_score' => '333',
'alignment_length' => '441',
'identity_percentage' => '43.31',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G66780' => array(
'gene_id' => 'AC00G66780',
'e_value' => '9e-101',
'bit_score' => '320',
'alignment_length' => '334',
'identity_percentage' => '50.00',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'MP02G02130' => array(
'gene_id' => 'MP02G02130',
'e_value' => '1e-100',
'bit_score' => '333',
'alignment_length' => '479',
'identity_percentage' => '41.75',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OT_01G00020' => array(
'gene_id' => 'OT_01G00020',
'e_value' => '5e-99',
'bit_score' => '326',
'alignment_length' => '444',
'identity_percentage' => '41.67',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_01G07810' => array(
'gene_id' => 'MRCC299_01G07810',
'e_value' => '3e-97',
'bit_score' => '314',
'alignment_length' => '412',
'identity_percentage' => '43.69',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'AA0005G00020' => array(
'gene_id' => 'AA0005G00020',
'e_value' => '2e-95',
'bit_score' => '309',
'alignment_length' => '419',
'identity_percentage' => '41.29',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100015g63' => array(
'gene_id' => 'Naga_100015g63',
'e_value' => '7e-95',
'bit_score' => '322',
'alignment_length' => '444',
'identity_percentage' => '37.39',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'FC022G00800' => array(
'gene_id' => 'FC022G00800',
'e_value' => '1e-93',
'bit_score' => '310',
'alignment_length' => '474',
'identity_percentage' => '39.03',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'VC00G133590' => array(
'gene_id' => 'VC00G133590',
'e_value' => '7e-93',
'bit_score' => '313',
'alignment_length' => '370',
'identity_percentage' => '45.68',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'pte489150' => array(
'gene_id' => 'pte489150',
'e_value' => '1e-90',
'bit_score' => '294',
'alignment_length' => '362',
'identity_percentage' => '43.37',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100030g26' => array(
'gene_id' => 'Naga_100030g26',
'e_value' => '1e-86',
'bit_score' => '289',
'alignment_length' => '424',
'identity_percentage' => '39.62',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'YIL107C' => array(
'gene_id' => 'YIL107C',
'e_value' => '3e-85',
'bit_score' => '293',
'alignment_length' => '434',
'identity_percentage' => '41.47',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'phs224790' => array(
'gene_id' => 'phs224790',
'e_value' => '8e-83',
'bit_score' => '280',
'alignment_length' => '414',
'identity_percentage' => '37.68',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'SPAC732.02c' => array(
'gene_id' => 'SPAC732.02c',
'e_value' => '2e-82',
'bit_score' => '275',
'alignment_length' => '407',
'identity_percentage' => '37.35',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000101904' => array(
'gene_id' => 'ENSMUSG00000101904',
'e_value' => '5e-81',
'bit_score' => '270',
'alignment_length' => '328',
'identity_percentage' => '43.29',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'SPAC222.13c' => array(
'gene_id' => 'SPAC222.13c',
'e_value' => '3e-79',
'bit_score' => '271',
'alignment_length' => '435',
'identity_percentage' => '37.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'phs98670' => array(
'gene_id' => 'phs98670',
'e_value' => '4e-74',
'bit_score' => '262',
'alignment_length' => '433',
'identity_percentage' => '35.33',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'AA0003G01460' => array(
'gene_id' => 'AA0003G01460',
'e_value' => '3e-72',
'bit_score' => '250',
'alignment_length' => '428',
'identity_percentage' => '36.68',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'pte134780' => array(
'gene_id' => 'pte134780',
'e_value' => '9e-72',
'bit_score' => '246',
'alignment_length' => '408',
'identity_percentage' => '33.09',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte519000' => array(
'gene_id' => 'pte519000',
'e_value' => '7e-71',
'bit_score' => '244',
'alignment_length' => '402',
'identity_percentage' => '32.84',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'emh168130' => array(
'gene_id' => 'emh168130',
'e_value' => '2e-70',
'bit_score' => '245',
'alignment_length' => '474',
'identity_percentage' => '33.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ES0048G00640' => array(
'gene_id' => 'ES0048G00640',
'e_value' => '2e-65',
'bit_score' => '233',
'alignment_length' => '401',
'identity_percentage' => '35.41',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_011G01130' => array(
'gene_id' => 'CNC64A_011G01130',
'e_value' => '2e-64',
'bit_score' => '222',
'alignment_length' => '245',
'identity_percentage' => '48.16',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ES0176G00050' => array(
'gene_id' => 'ES0176G00050',
'e_value' => '6e-64',
'bit_score' => '226',
'alignment_length' => '409',
'identity_percentage' => '34.96',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'ES0133G00230' => array(
'gene_id' => 'ES0133G00230',
'e_value' => '3e-63',
'bit_score' => '228',
'alignment_length' => '511',
'identity_percentage' => '31.12',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'TP18G02360' => array(
'gene_id' => 'TP18G02360',
'e_value' => '1e-62',
'bit_score' => '221',
'alignment_length' => '416',
'identity_percentage' => '35.10',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'AT3G30200' => array(
'gene_id' => 'AT3G30200',
'e_value' => '2e-60',
'bit_score' => '218',
'alignment_length' => '116',
'identity_percentage' => '93.10',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'SPAPB17E12.14c' => array(
'gene_id' => 'SPAPB17E12.14c',
'e_value' => '1e-55',
'bit_score' => '207',
'alignment_length' => '288',
'identity_percentage' => '39.58',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'AA0003G04020' => array(
'gene_id' => 'AA0003G04020',
'e_value' => '7e-55',
'bit_score' => '196',
'alignment_length' => '302',
'identity_percentage' => '39.74',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'OM_17G00490' => array(
'gene_id' => 'OM_17G00490',
'e_value' => '9e-53',
'bit_score' => '197',
'alignment_length' => '455',
'identity_percentage' => '31.65',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'emh398660' => array(
'gene_id' => 'emh398660',
'e_value' => '2e-49',
'bit_score' => '179',
'alignment_length' => '234',
'identity_percentage' => '43.16',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'FC001G09940' => array(
'gene_id' => 'FC001G09940',
'e_value' => '6e-49',
'bit_score' => '187',
'alignment_length' => '509',
'identity_percentage' => '27.31',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'emh576590' => array(
'gene_id' => 'emh576590',
'e_value' => '1e-48',
'bit_score' => '184',
'alignment_length' => '414',
'identity_percentage' => '28.99',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'MP16G00560' => array(
'gene_id' => 'MP16G00560',
'e_value' => '3e-48',
'bit_score' => '182',
'alignment_length' => '449',
'identity_percentage' => '30.07',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'ES0151G00100' => array(
'gene_id' => 'ES0151G00100',
'e_value' => '3e-47',
'bit_score' => '181',
'alignment_length' => '178',
'identity_percentage' => '45.51',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'emh227060' => array(
'gene_id' => 'emh227060',
'e_value' => '5e-47',
'bit_score' => '179',
'alignment_length' => '419',
'identity_percentage' => '29.36',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'OL16G00450' => array(
'gene_id' => 'OL16G00450',
'e_value' => '2e-46',
'bit_score' => '170',
'alignment_length' => '239',
'identity_percentage' => '42.26',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'emh592730' => array(
'gene_id' => 'emh592730',
'e_value' => '5e-46',
'bit_score' => '177',
'alignment_length' => '440',
'identity_percentage' => '30.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_10G05010' => array(
'gene_id' => 'MRCC299_10G05010',
'e_value' => '9e-46',
'bit_score' => '172',
'alignment_length' => '317',
'identity_percentage' => '34.07',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'AA0012G01840' => array(
'gene_id' => 'AA0012G01840',
'e_value' => '6e-44',
'bit_score' => '173',
'alignment_length' => '417',
'identity_percentage' => '30.22',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'emh272030' => array(
'gene_id' => 'emh272030',
'e_value' => '3e-43',
'bit_score' => '169',
'alignment_length' => '458',
'identity_percentage' => '28.17',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh350640' => array(
'gene_id' => 'emh350640',
'e_value' => '9e-43',
'bit_score' => '168',
'alignment_length' => '421',
'identity_percentage' => '30.40',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_16G02230' => array(
'gene_id' => 'ORCC809_16G02230',
'e_value' => '2e-41',
'bit_score' => '155',
'alignment_length' => '233',
'identity_percentage' => '40.77',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0282759' => array(
'gene_id' => 'DDB_G0282759',
'e_value' => '2e-40',
'bit_score' => '159',
'alignment_length' => '162',
'identity_percentage' => '47.53',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'SPAC144.17c' => array(
'gene_id' => 'SPAC144.17c',
'e_value' => '2e-39',
'bit_score' => '155',
'alignment_length' => '408',
'identity_percentage' => '29.66',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'emh497190' => array(
'gene_id' => 'emh497190',
'e_value' => '1e-38',
'bit_score' => '153',
'alignment_length' => '246',
'identity_percentage' => '35.37',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh741640' => array(
'gene_id' => 'emh741640',
'e_value' => '7e-38',
'bit_score' => '149',
'alignment_length' => '136',
'identity_percentage' => '52.21',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_01G06520' => array(
'gene_id' => 'ORCC809_01G06520',
'e_value' => '7e-38',
'bit_score' => '147',
'alignment_length' => '252',
'identity_percentage' => '38.10',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G10910' => array(
'gene_id' => 'PTI_01G10910',
'e_value' => '1e-35',
'bit_score' => '147',
'alignment_length' => '289',
'identity_percentage' => '32.18',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'emh39080' => array(
'gene_id' => 'emh39080',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh701440' => array(
'gene_id' => 'emh701440',
'e_value' => '4e-30',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh150560' => array(
'gene_id' => 'emh150560',
'e_value' => '4e-30',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh242330' => array(
'gene_id' => 'emh242330',
'e_value' => '3e-29',
'bit_score' => '125',
'alignment_length' => '414',
'identity_percentage' => '26.57',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh710970' => array(
'gene_id' => 'emh710970',
'e_value' => '5e-29',
'bit_score' => '124',
'alignment_length' => '414',
'identity_percentage' => '26.57',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh545310' => array(
'gene_id' => 'emh545310',
'e_value' => '7e-25',
'bit_score' => '113',
'alignment_length' => '266',
'identity_percentage' => '27.82',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh744380' => array(
'gene_id' => 'emh744380',
'e_value' => '2e-21',
'bit_score' => '103',
'alignment_length' => '290',
'identity_percentage' => '25.52',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_783G00010' => array(
'gene_id' => 'CNC64A_783G00010',
'e_value' => '2e-21',
'bit_score' => '94.7',
'alignment_length' => '83',
'identity_percentage' => '53.01',
'gf' => array(
[maximum depth reached]
)
),
'emh479120' => array(
'gene_id' => 'emh479120',
'e_value' => '1e-20',
'bit_score' => '96.7',
'alignment_length' => '219',
'identity_percentage' => '28.77',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ES0048G00310' => array(
'gene_id' => 'ES0048G00310',
'e_value' => '2e-17',
'bit_score' => '84.3',
'alignment_length' => '81',
'identity_percentage' => '44.44',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'emh614720' => array(
'gene_id' => 'emh614720',
'e_value' => '3e-16',
'bit_score' => '84.0',
'alignment_length' => '222',
'identity_percentage' => '28.83',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100969g3' => array(
'gene_id' => 'Naga_100969g3',
'e_value' => '6e-15',
'bit_score' => '77.0',
'alignment_length' => '76',
'identity_percentage' => '40.79',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'emh478560' => array(
'gene_id' => 'emh478560',
'e_value' => '2e-08',
'bit_score' => '58.5',
'alignment_length' => '110',
'identity_percentage' => '31.82',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'AT3G50520' => array(
'gene_id' => 'AT3G50520',
'e_value' => '4e-07',
'bit_score' => '55.5',
'alignment_length' => '187',
'identity_percentage' => '26.74',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G13260' => array(
'gene_id' => 'AC00G13260',
'e_value' => '7e-07',
'bit_score' => '55.1',
'alignment_length' => '167',
'identity_percentage' => '29.34',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'PP00205G00220' => array(
'gene_id' => 'PP00205G00220',
'e_value' => '1e-06',
'bit_score' => '55.5',
'alignment_length' => '206',
'identity_percentage' => '28.16',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT5G04120' => array(
'gene_id' => 'AT5G04120',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '161',
'identity_percentage' => '30.43',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0280831' => array(
'gene_id' => 'DDB_G0280831',
'e_value' => '2e-06',
'bit_score' => '55.5',
'alignment_length' => '176',
'identity_percentage' => '27.84',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'pte489130' => array(
'gene_id' => 'pte489130',
'e_value' => '2e-06',
'bit_score' => '51.2',
'alignment_length' => '48',
'identity_percentage' => '41.67',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OS08G37140' => array(
'gene_id' => 'OS08G37140',
'e_value' => '5e-06',
'bit_score' => '53.1',
'alignment_length' => '185',
'identity_percentage' => '29.19',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'ath' => array(
(int) 0 => 'AT1G07110',
(int) 1 => 'AT3G30200',
(int) 2 => 'AT3G50520',
(int) 3 => 'AT5G04120'
),
'atr' => array(
(int) 0 => 'ATR_00007G01380'
),
'osa' => array(
(int) 0 => 'OS05G07130',
(int) 1 => 'OS03G18310',
(int) 2 => 'OS08G37140'
),
'ppa' => array(
(int) 0 => 'PP00242G00370',
(int) 1 => 'PP00215G00480',
(int) 2 => 'PP00235G00510',
(int) 3 => 'PP00414G00150',
(int) 4 => 'PP00205G00220'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.06g00990'
),
'cvu' => array(
(int) 0 => 'CV00G87950'
),
'pse3' => array(
(int) 0 => 'PI00G64210'
),
'cre' => array(
(int) 0 => 'CR16G12950',
(int) 1 => 'CR16G02280'
),
'ccr' => array(
(int) 0 => 'ccr56200'
),
'vca' => array(
(int) 0 => 'VC00G96280',
(int) 1 => 'VC00G133590'
),
'pte' => array(
(int) 0 => 'pte157060',
(int) 1 => 'pte98110',
(int) 2 => 'pte383600',
(int) 3 => 'pte648520',
(int) 4 => 'pte489150',
(int) 5 => 'pte134780',
(int) 6 => 'pte519000',
(int) 7 => 'pte489130'
),
'nga' => array(
(int) 0 => 'Naga_100004g69',
(int) 1 => 'Naga_100015g63',
(int) 2 => 'Naga_100030g26',
(int) 3 => 'Naga_100969g3'
),
'esi' => array(
(int) 0 => 'ES0099G00380',
(int) 1 => 'ES0048G00640',
(int) 2 => 'ES0176G00050',
(int) 3 => 'ES0133G00230',
(int) 4 => 'ES0151G00100',
(int) 5 => 'ES0048G00310'
),
'cme' => array(
(int) 0 => 'CM14G00850'
),
'gsu' => array(
(int) 0 => 'gsu43500',
(int) 1 => 'gsu21500'
),
'apr' => array(
(int) 0 => 'AP00G63940'
),
'hom' => array(
(int) 0 => 'ENSG00000158571',
(int) 1 => 'ENSG00000170525',
(int) 2 => 'ENSG00000114268'
),
'tps' => array(
(int) 0 => 'TP02G06550',
(int) 1 => 'TP18G02360'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000026773',
(int) 1 => 'ENSMUSG00000101904'
),
'cel' => array(
(int) 0 => 'WBGene00019295',
(int) 1 => 'WBGene00022456'
),
'drm' => array(
(int) 0 => 'FBgn0027621'
),
'phs' => array(
(int) 0 => 'phs288590',
(int) 1 => 'phs224790',
(int) 2 => 'phs98670'
),
'ptri' => array(
(int) 0 => 'PTI_01G04850',
(int) 1 => 'PTI_01G10910'
),
'sac' => array(
(int) 0 => 'YJL155C',
(int) 1 => 'YIL107C'
),
'ddi' => array(
(int) 0 => 'DDB_G0276253',
(int) 1 => 'DDB_G0282759',
(int) 2 => 'DDB_G0280831'
),
'olu' => array(
(int) 0 => 'OL01G00070',
(int) 1 => 'OL16G00450'
),
'ome' => array(
(int) 0 => 'OM_01G07100',
(int) 1 => 'OM_17G00490'
),
'acg' => array(
(int) 0 => 'AC00G66780',
(int) 1 => 'AC00G13260'
),
'mpu' => array(
(int) 0 => 'MP02G02130',
(int) 1 => 'MP16G00560'
),
'ota' => array(
(int) 0 => 'OT_01G00020'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_01G07810',
(int) 1 => 'MRCC299_10G05010'
),
'aan' => array(
(int) 0 => 'AA0005G00020',
(int) 1 => 'AA0003G01460',
(int) 2 => 'AA0003G04020',
(int) 3 => 'AA0012G01840'
),
'fcy' => array(
(int) 0 => 'FC022G00800',
(int) 1 => 'FC001G09940'
),
'scp' => array(
(int) 0 => 'SPAC732.02c',
(int) 1 => 'SPAC222.13c',
(int) 2 => 'SPAPB17E12.14c',
(int) 3 => 'SPAC144.17c'
),
'emh' => array(
(int) 0 => 'emh168130',
(int) 1 => 'emh398660',
(int) 2 => 'emh576590',
(int) 3 => 'emh227060',
(int) 4 => 'emh592730',
(int) 5 => 'emh272030',
(int) 6 => 'emh350640',
(int) 7 => 'emh497190',
(int) 8 => 'emh741640',
(int) 9 => 'emh39080',
(int) 10 => 'emh701440',
(int) 11 => 'emh150560',
(int) 12 => 'emh242330',
(int) 13 => 'emh710970',
(int) 14 => 'emh545310',
(int) 15 => 'emh744380',
(int) 16 => 'emh479120',
(int) 17 => 'emh614720',
(int) 18 => 'emh478560'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_011G01130'
),
'orcc809' => array(
(int) 0 => 'ORCC809_16G02230',
(int) 1 => 'ORCC809_01G06520'
)
),
'gene_id' => 'AT1G07110',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'AT1G07110',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'CM07G01050',
'gf_placeholder' => 'HOM03P000450',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'AT1G07110' => array(
'gene_id' => 'AT1G07110',
'e_value' => '0.0',
'bit_score' => '1536',
'alignment_length' => '745',
'identity_percentage' => '100.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ATR_00007G01380' => array(
'gene_id' => 'ATR_00007G01380',
'e_value' => '0.0',
'bit_score' => '1143',
'alignment_length' => '752',
'identity_percentage' => '76.06',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OS05G07130' => array(
'gene_id' => 'OS05G07130',
'e_value' => '0.0',
'bit_score' => '1059',
'alignment_length' => '740',
'identity_percentage' => '72.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PP00242G00370' => array(
'gene_id' => 'PP00242G00370',
'e_value' => '0.0',
'bit_score' => '862',
'alignment_length' => '787',
'identity_percentage' => '59.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PP00215G00480' => array(
'gene_id' => 'PP00215G00480',
'e_value' => '0.0',
'bit_score' => '855',
'alignment_length' => '772',
'identity_percentage' => '59.84',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PP00235G00510' => array(
'gene_id' => 'PP00235G00510',
'e_value' => '0.0',
'bit_score' => '814',
'alignment_length' => '805',
'identity_percentage' => '55.16',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PP00414G00150' => array(
'gene_id' => 'PP00414G00150',
'e_value' => '0.0',
'bit_score' => '808',
'alignment_length' => '752',
'identity_percentage' => '57.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OS03G18310' => array(
'gene_id' => 'OS03G18310',
'e_value' => '0.0',
'bit_score' => '785',
'alignment_length' => '468',
'identity_percentage' => '80.56',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'RCC4223.06g00990' => array(
'gene_id' => 'RCC4223.06g00990',
'e_value' => '4e-133',
'bit_score' => '414',
'alignment_length' => '419',
'identity_percentage' => '49.64',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'CV00G87950' => array(
'gene_id' => 'CV00G87950',
'e_value' => '2e-132',
'bit_score' => '408',
'alignment_length' => '400',
'identity_percentage' => '52.50',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PI00G64210' => array(
'gene_id' => 'PI00G64210',
'e_value' => '2e-132',
'bit_score' => '412',
'alignment_length' => '419',
'identity_percentage' => '49.88',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'CR16G12950' => array(
'gene_id' => 'CR16G12950',
'e_value' => '1e-125',
'bit_score' => '399',
'alignment_length' => '450',
'identity_percentage' => '45.78',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ccr56200' => array(
'gene_id' => 'ccr56200',
'e_value' => '2e-124',
'bit_score' => '387',
'alignment_length' => '408',
'identity_percentage' => '47.79',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'VC00G96280' => array(
'gene_id' => 'VC00G96280',
'e_value' => '6e-121',
'bit_score' => '392',
'alignment_length' => '411',
'identity_percentage' => '49.15',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'CR16G02280' => array(
'gene_id' => 'CR16G02280',
'e_value' => '8e-120',
'bit_score' => '392',
'alignment_length' => '436',
'identity_percentage' => '46.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'pte157060' => array(
'gene_id' => 'pte157060',
'e_value' => '9e-120',
'bit_score' => '374',
'alignment_length' => '419',
'identity_percentage' => '43.44',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'Naga_100004g69' => array(
'gene_id' => 'Naga_100004g69',
'e_value' => '5e-119',
'bit_score' => '375',
'alignment_length' => '407',
'identity_percentage' => '45.45',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'pte98110' => array(
'gene_id' => 'pte98110',
'e_value' => '4e-118',
'bit_score' => '369',
'alignment_length' => '419',
'identity_percentage' => '42.96',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ES0099G00380' => array(
'gene_id' => 'ES0099G00380',
'e_value' => '5e-118',
'bit_score' => '368',
'alignment_length' => '404',
'identity_percentage' => '45.05',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'CM14G00850' => array(
'gene_id' => 'CM14G00850',
'e_value' => '2e-117',
'bit_score' => '382',
'alignment_length' => '409',
'identity_percentage' => '45.23',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'gsu43500' => array(
'gene_id' => 'gsu43500',
'e_value' => '4e-117',
'bit_score' => '368',
'alignment_length' => '409',
'identity_percentage' => '46.21',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'AP00G63940' => array(
'gene_id' => 'AP00G63940',
'e_value' => '9e-116',
'bit_score' => '389',
'alignment_length' => '422',
'identity_percentage' => '48.34',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P004817',
'ORTHOFAM' => 'ORTHO03P004621'
)
),
'gsu21500' => array(
'gene_id' => 'gsu21500',
'e_value' => '6e-114',
'bit_score' => '360',
'alignment_length' => '409',
'identity_percentage' => '45.97',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'pte383600' => array(
'gene_id' => 'pte383600',
'e_value' => '2e-113',
'bit_score' => '358',
'alignment_length' => '421',
'identity_percentage' => '41.33',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'pte648520' => array(
'gene_id' => 'pte648520',
'e_value' => '7e-113',
'bit_score' => '356',
'alignment_length' => '418',
'identity_percentage' => '42.82',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSG00000158571' => array(
'gene_id' => 'ENSG00000158571',
'e_value' => '8e-113',
'bit_score' => '357',
'alignment_length' => '391',
'identity_percentage' => '47.31',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSG00000170525' => array(
'gene_id' => 'ENSG00000170525',
'e_value' => '9e-112',
'bit_score' => '356',
'alignment_length' => '403',
'identity_percentage' => '46.40',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'TP02G06550' => array(
'gene_id' => 'TP02G06550',
'e_value' => '1e-110',
'bit_score' => '348',
'alignment_length' => '399',
'identity_percentage' => '44.11',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSMUSG00000026773' => array(
'gene_id' => 'ENSMUSG00000026773',
'e_value' => '6e-110',
'bit_score' => '352',
'alignment_length' => '403',
'identity_percentage' => '46.15',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'WBGene00019295' => array(
'gene_id' => 'WBGene00019295',
'e_value' => '8e-109',
'bit_score' => '346',
'alignment_length' => '399',
'identity_percentage' => '45.11',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSG00000114268' => array(
'gene_id' => 'ENSG00000114268',
'e_value' => '2e-108',
'bit_score' => '345',
'alignment_length' => '391',
'identity_percentage' => '46.29',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'FBgn0027621' => array(
'gene_id' => 'FBgn0027621',
'e_value' => '2e-107',
'bit_score' => '350',
'alignment_length' => '402',
'identity_percentage' => '44.78',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'phs288590' => array(
'gene_id' => 'phs288590',
'e_value' => '1e-106',
'bit_score' => '350',
'alignment_length' => '411',
'identity_percentage' => '43.55',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PTI_01G04850' => array(
'gene_id' => 'PTI_01G04850',
'e_value' => '3e-106',
'bit_score' => '343',
'alignment_length' => '477',
'identity_percentage' => '40.88',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'YJL155C' => array(
'gene_id' => 'YJL155C',
'e_value' => '3e-105',
'bit_score' => '336',
'alignment_length' => '410',
'identity_percentage' => '44.15',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'DDB_G0276253' => array(
'gene_id' => 'DDB_G0276253',
'e_value' => '6e-105',
'bit_score' => '337',
'alignment_length' => '410',
'identity_percentage' => '43.90',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'WBGene00022456' => array(
'gene_id' => 'WBGene00022456',
'e_value' => '5e-102',
'bit_score' => '328',
'alignment_length' => '403',
'identity_percentage' => '45.16',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OL01G00070' => array(
'gene_id' => 'OL01G00070',
'e_value' => '5e-102',
'bit_score' => '330',
'alignment_length' => '445',
'identity_percentage' => '42.47',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OM_01G07100' => array(
'gene_id' => 'OM_01G07100',
'e_value' => '3e-101',
'bit_score' => '333',
'alignment_length' => '441',
'identity_percentage' => '43.31',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'AC00G66780' => array(
'gene_id' => 'AC00G66780',
'e_value' => '9e-101',
'bit_score' => '320',
'alignment_length' => '334',
'identity_percentage' => '50.00',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'MP02G02130' => array(
'gene_id' => 'MP02G02130',
'e_value' => '1e-100',
'bit_score' => '333',
'alignment_length' => '479',
'identity_percentage' => '41.75',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OT_01G00020' => array(
'gene_id' => 'OT_01G00020',
'e_value' => '5e-99',
'bit_score' => '326',
'alignment_length' => '444',
'identity_percentage' => '41.67',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'MRCC299_01G07810' => array(
'gene_id' => 'MRCC299_01G07810',
'e_value' => '3e-97',
'bit_score' => '314',
'alignment_length' => '412',
'identity_percentage' => '43.69',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'AA0005G00020' => array(
'gene_id' => 'AA0005G00020',
'e_value' => '2e-95',
'bit_score' => '309',
'alignment_length' => '419',
'identity_percentage' => '41.29',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'Naga_100015g63' => array(
'gene_id' => 'Naga_100015g63',
'e_value' => '7e-95',
'bit_score' => '322',
'alignment_length' => '444',
'identity_percentage' => '37.39',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'FC022G00800' => array(
'gene_id' => 'FC022G00800',
'e_value' => '1e-93',
'bit_score' => '310',
'alignment_length' => '474',
'identity_percentage' => '39.03',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'VC00G133590' => array(
'gene_id' => 'VC00G133590',
'e_value' => '7e-93',
'bit_score' => '313',
'alignment_length' => '370',
'identity_percentage' => '45.68',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P038493'
)
),
'pte489150' => array(
'gene_id' => 'pte489150',
'e_value' => '1e-90',
'bit_score' => '294',
'alignment_length' => '362',
'identity_percentage' => '43.37',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'Naga_100030g26' => array(
'gene_id' => 'Naga_100030g26',
'e_value' => '1e-86',
'bit_score' => '289',
'alignment_length' => '424',
'identity_percentage' => '39.62',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'YIL107C' => array(
'gene_id' => 'YIL107C',
'e_value' => '3e-85',
'bit_score' => '293',
'alignment_length' => '434',
'identity_percentage' => '41.47',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'phs224790' => array(
'gene_id' => 'phs224790',
'e_value' => '8e-83',
'bit_score' => '280',
'alignment_length' => '414',
'identity_percentage' => '37.68',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'SPAC732.02c' => array(
'gene_id' => 'SPAC732.02c',
'e_value' => '2e-82',
'bit_score' => '275',
'alignment_length' => '407',
'identity_percentage' => '37.35',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSMUSG00000101904' => array(
'gene_id' => 'ENSMUSG00000101904',
'e_value' => '5e-81',
'bit_score' => '270',
'alignment_length' => '328',
'identity_percentage' => '43.29',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'SPAC222.13c' => array(
'gene_id' => 'SPAC222.13c',
'e_value' => '3e-79',
'bit_score' => '271',
'alignment_length' => '435',
'identity_percentage' => '37.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P150224'
)
),
'phs98670' => array(
'gene_id' => 'phs98670',
'e_value' => '4e-74',
'bit_score' => '262',
'alignment_length' => '433',
'identity_percentage' => '35.33',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'AA0003G01460' => array(
'gene_id' => 'AA0003G01460',
'e_value' => '3e-72',
'bit_score' => '250',
'alignment_length' => '428',
'identity_percentage' => '36.68',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'pte134780' => array(
'gene_id' => 'pte134780',
'e_value' => '9e-72',
'bit_score' => '246',
'alignment_length' => '408',
'identity_percentage' => '33.09',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P045096'
)
),
'pte519000' => array(
'gene_id' => 'pte519000',
'e_value' => '7e-71',
'bit_score' => '244',
'alignment_length' => '402',
'identity_percentage' => '32.84',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P045096'
)
),
'emh168130' => array(
'gene_id' => 'emh168130',
'e_value' => '2e-70',
'bit_score' => '245',
'alignment_length' => '474',
'identity_percentage' => '33.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ES0048G00640' => array(
'gene_id' => 'ES0048G00640',
'e_value' => '2e-65',
'bit_score' => '233',
'alignment_length' => '401',
'identity_percentage' => '35.41',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P181999'
)
),
'CNC64A_011G01130' => array(
'gene_id' => 'CNC64A_011G01130',
'e_value' => '2e-64',
'bit_score' => '222',
'alignment_length' => '245',
'identity_percentage' => '48.16',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ES0176G00050' => array(
'gene_id' => 'ES0176G00050',
'e_value' => '6e-64',
'bit_score' => '226',
'alignment_length' => '409',
'identity_percentage' => '34.96',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'ES0133G00230' => array(
'gene_id' => 'ES0133G00230',
'e_value' => '3e-63',
'bit_score' => '228',
'alignment_length' => '511',
'identity_percentage' => '31.12',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P207885'
)
),
'TP18G02360' => array(
'gene_id' => 'TP18G02360',
'e_value' => '1e-62',
'bit_score' => '221',
'alignment_length' => '416',
'identity_percentage' => '35.10',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'AT3G30200' => array(
'gene_id' => 'AT3G30200',
'e_value' => '2e-60',
'bit_score' => '218',
'alignment_length' => '116',
'identity_percentage' => '93.10',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P018721',
'ORTHOFAM' => 'ORTHO03P049819'
)
),
'SPAPB17E12.14c' => array(
'gene_id' => 'SPAPB17E12.14c',
'e_value' => '1e-55',
'bit_score' => '207',
'alignment_length' => '288',
'identity_percentage' => '39.58',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'AA0003G04020' => array(
'gene_id' => 'AA0003G04020',
'e_value' => '7e-55',
'bit_score' => '196',
'alignment_length' => '302',
'identity_percentage' => '39.74',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'OM_17G00490' => array(
'gene_id' => 'OM_17G00490',
'e_value' => '9e-53',
'bit_score' => '197',
'alignment_length' => '455',
'identity_percentage' => '31.65',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'emh398660' => array(
'gene_id' => 'emh398660',
'e_value' => '2e-49',
'bit_score' => '179',
'alignment_length' => '234',
'identity_percentage' => '43.16',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'FC001G09940' => array(
'gene_id' => 'FC001G09940',
'e_value' => '6e-49',
'bit_score' => '187',
'alignment_length' => '509',
'identity_percentage' => '27.31',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'emh576590' => array(
'gene_id' => 'emh576590',
'e_value' => '1e-48',
'bit_score' => '184',
'alignment_length' => '414',
'identity_percentage' => '28.99',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'MP16G00560' => array(
'gene_id' => 'MP16G00560',
'e_value' => '3e-48',
'bit_score' => '182',
'alignment_length' => '449',
'identity_percentage' => '30.07',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'ES0151G00100' => array(
'gene_id' => 'ES0151G00100',
'e_value' => '3e-47',
'bit_score' => '181',
'alignment_length' => '178',
'identity_percentage' => '45.51',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P106405'
)
),
'emh227060' => array(
'gene_id' => 'emh227060',
'e_value' => '5e-47',
'bit_score' => '179',
'alignment_length' => '419',
'identity_percentage' => '29.36',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'OL16G00450' => array(
'gene_id' => 'OL16G00450',
'e_value' => '2e-46',
'bit_score' => '170',
'alignment_length' => '239',
'identity_percentage' => '42.26',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'emh592730' => array(
'gene_id' => 'emh592730',
'e_value' => '5e-46',
'bit_score' => '177',
'alignment_length' => '440',
'identity_percentage' => '30.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'MRCC299_10G05010' => array(
'gene_id' => 'MRCC299_10G05010',
'e_value' => '9e-46',
'bit_score' => '172',
'alignment_length' => '317',
'identity_percentage' => '34.07',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'AA0012G01840' => array(
'gene_id' => 'AA0012G01840',
'e_value' => '6e-44',
'bit_score' => '173',
'alignment_length' => '417',
'identity_percentage' => '30.22',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'emh272030' => array(
'gene_id' => 'emh272030',
'e_value' => '3e-43',
'bit_score' => '169',
'alignment_length' => '458',
'identity_percentage' => '28.17',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'emh350640' => array(
'gene_id' => 'emh350640',
'e_value' => '9e-43',
'bit_score' => '168',
'alignment_length' => '421',
'identity_percentage' => '30.40',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'ORCC809_16G02230' => array(
'gene_id' => 'ORCC809_16G02230',
'e_value' => '2e-41',
'bit_score' => '155',
'alignment_length' => '233',
'identity_percentage' => '40.77',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'DDB_G0282759' => array(
'gene_id' => 'DDB_G0282759',
'e_value' => '2e-40',
'bit_score' => '159',
'alignment_length' => '162',
'identity_percentage' => '47.53',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P038493'
)
),
'SPAC144.17c' => array(
'gene_id' => 'SPAC144.17c',
'e_value' => '2e-39',
'bit_score' => '155',
'alignment_length' => '408',
'identity_percentage' => '29.66',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P150829'
)
),
'emh497190' => array(
'gene_id' => 'emh497190',
'e_value' => '1e-38',
'bit_score' => '153',
'alignment_length' => '246',
'identity_percentage' => '35.37',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'emh741640' => array(
'gene_id' => 'emh741640',
'e_value' => '7e-38',
'bit_score' => '149',
'alignment_length' => '136',
'identity_percentage' => '52.21',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P038493'
)
),
'ORCC809_01G06520' => array(
'gene_id' => 'ORCC809_01G06520',
'e_value' => '7e-38',
'bit_score' => '147',
'alignment_length' => '252',
'identity_percentage' => '38.10',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PTI_01G10910' => array(
'gene_id' => 'PTI_01G10910',
'e_value' => '1e-35',
'bit_score' => '147',
'alignment_length' => '289',
'identity_percentage' => '32.18',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'emh39080' => array(
'gene_id' => 'emh39080',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P031043'
)
),
'emh701440' => array(
'gene_id' => 'emh701440',
'e_value' => '4e-30',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P031043'
)
),
'emh150560' => array(
'gene_id' => 'emh150560',
'e_value' => '4e-30',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P031043'
)
),
'emh242330' => array(
'gene_id' => 'emh242330',
'e_value' => '3e-29',
'bit_score' => '125',
'alignment_length' => '414',
'identity_percentage' => '26.57',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P046820'
)
),
'emh710970' => array(
'gene_id' => 'emh710970',
'e_value' => '5e-29',
'bit_score' => '124',
'alignment_length' => '414',
'identity_percentage' => '26.57',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P046820'
)
),
'emh545310' => array(
'gene_id' => 'emh545310',
'e_value' => '7e-25',
'bit_score' => '113',
'alignment_length' => '266',
'identity_percentage' => '27.82',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P046834'
)
),
'emh744380' => array(
'gene_id' => 'emh744380',
'e_value' => '2e-21',
'bit_score' => '103',
'alignment_length' => '290',
'identity_percentage' => '25.52',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P046834'
)
),
'CNC64A_783G00010' => array(
'gene_id' => 'CNC64A_783G00010',
'e_value' => '2e-21',
'bit_score' => '94.7',
'alignment_length' => '83',
'identity_percentage' => '53.01',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'emh479120' => array(
'gene_id' => 'emh479120',
'e_value' => '1e-20',
'bit_score' => '96.7',
'alignment_length' => '219',
'identity_percentage' => '28.77',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P032231'
)
),
'ES0048G00310' => array(
'gene_id' => 'ES0048G00310',
'e_value' => '2e-17',
'bit_score' => '84.3',
'alignment_length' => '81',
'identity_percentage' => '44.44',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P204094'
)
),
'emh614720' => array(
'gene_id' => 'emh614720',
'e_value' => '3e-16',
'bit_score' => '84.0',
'alignment_length' => '222',
'identity_percentage' => '28.83',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P032231'
)
),
'Naga_100969g3' => array(
'gene_id' => 'Naga_100969g3',
'e_value' => '6e-15',
'bit_score' => '77.0',
'alignment_length' => '76',
'identity_percentage' => '40.79',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P171772'
)
),
'emh478560' => array(
'gene_id' => 'emh478560',
'e_value' => '2e-08',
'bit_score' => '58.5',
'alignment_length' => '110',
'identity_percentage' => '31.82',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P032231'
)
),
'AT3G50520' => array(
'gene_id' => 'AT3G50520',
'e_value' => '4e-07',
'bit_score' => '55.5',
'alignment_length' => '187',
'identity_percentage' => '26.74',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P003673',
'ORTHOFAM' => 'ORTHO03P003207'
)
),
'AC00G13260' => array(
'gene_id' => 'AC00G13260',
'e_value' => '7e-07',
'bit_score' => '55.1',
'alignment_length' => '167',
'identity_percentage' => '29.34',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P003673',
'ORTHOFAM' => 'ORTHO03P003207'
)
),
'PP00205G00220' => array(
'gene_id' => 'PP00205G00220',
'e_value' => '1e-06',
'bit_score' => '55.5',
'alignment_length' => '206',
'identity_percentage' => '28.16',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P003432',
'ORTHOFAM' => 'ORTHO03P021008'
)
),
'AT5G04120' => array(
'gene_id' => 'AT5G04120',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '161',
'identity_percentage' => '30.43',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P003673',
'ORTHOFAM' => 'ORTHO03P003207'
)
),
'DDB_G0280831' => array(
'gene_id' => 'DDB_G0280831',
'e_value' => '2e-06',
'bit_score' => '55.5',
'alignment_length' => '176',
'identity_percentage' => '27.84',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P019780',
'ORTHOFAM' => 'ORTHO03P027333'
)
),
'pte489130' => array(
'gene_id' => 'pte489130',
'e_value' => '2e-06',
'bit_score' => '51.2',
'alignment_length' => '48',
'identity_percentage' => '41.67',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P175001'
)
),
'OS08G37140' => array(
'gene_id' => 'OS08G37140',
'e_value' => '5e-06',
'bit_score' => '53.1',
'alignment_length' => '185',
'identity_percentage' => '29.19',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P003673',
'ORTHOFAM' => 'ORTHO03P003207'
)
)
)
$similarity_hits_species = array(
'ath' => array(
(int) 0 => 'AT1G07110',
(int) 1 => 'AT3G30200',
(int) 2 => 'AT3G50520',
(int) 3 => 'AT5G04120'
),
'atr' => array(
(int) 0 => 'ATR_00007G01380'
),
'osa' => array(
(int) 0 => 'OS05G07130',
(int) 1 => 'OS03G18310',
(int) 2 => 'OS08G37140'
),
'ppa' => array(
(int) 0 => 'PP00242G00370',
(int) 1 => 'PP00215G00480',
(int) 2 => 'PP00235G00510',
(int) 3 => 'PP00414G00150',
(int) 4 => 'PP00205G00220'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.06g00990'
),
'cvu' => array(
(int) 0 => 'CV00G87950'
),
'pse3' => array(
(int) 0 => 'PI00G64210'
),
'cre' => array(
(int) 0 => 'CR16G12950',
(int) 1 => 'CR16G02280'
),
'ccr' => array(
(int) 0 => 'ccr56200'
),
'vca' => array(
(int) 0 => 'VC00G96280',
(int) 1 => 'VC00G133590'
),
'pte' => array(
(int) 0 => 'pte157060',
(int) 1 => 'pte98110',
(int) 2 => 'pte383600',
(int) 3 => 'pte648520',
(int) 4 => 'pte489150',
(int) 5 => 'pte134780',
(int) 6 => 'pte519000',
(int) 7 => 'pte489130'
),
'nga' => array(
(int) 0 => 'Naga_100004g69',
(int) 1 => 'Naga_100015g63',
(int) 2 => 'Naga_100030g26',
(int) 3 => 'Naga_100969g3'
),
'esi' => array(
(int) 0 => 'ES0099G00380',
(int) 1 => 'ES0048G00640',
(int) 2 => 'ES0176G00050',
(int) 3 => 'ES0133G00230',
(int) 4 => 'ES0151G00100',
(int) 5 => 'ES0048G00310'
),
'cme' => array(
(int) 0 => 'CM14G00850'
),
'gsu' => array(
(int) 0 => 'gsu43500',
(int) 1 => 'gsu21500'
),
'apr' => array(
(int) 0 => 'AP00G63940'
),
'hom' => array(
(int) 0 => 'ENSG00000158571',
(int) 1 => 'ENSG00000170525',
(int) 2 => 'ENSG00000114268'
),
'tps' => array(
(int) 0 => 'TP02G06550',
(int) 1 => 'TP18G02360'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000026773',
(int) 1 => 'ENSMUSG00000101904'
),
'cel' => array(
(int) 0 => 'WBGene00019295',
(int) 1 => 'WBGene00022456'
),
'drm' => array(
(int) 0 => 'FBgn0027621'
),
'phs' => array(
(int) 0 => 'phs288590',
(int) 1 => 'phs224790',
(int) 2 => 'phs98670'
),
'ptri' => array(
(int) 0 => 'PTI_01G04850',
(int) 1 => 'PTI_01G10910'
),
'sac' => array(
(int) 0 => 'YJL155C',
(int) 1 => 'YIL107C'
),
'ddi' => array(
(int) 0 => 'DDB_G0276253',
(int) 1 => 'DDB_G0282759',
(int) 2 => 'DDB_G0280831'
),
'olu' => array(
(int) 0 => 'OL01G00070',
(int) 1 => 'OL16G00450'
),
'ome' => array(
(int) 0 => 'OM_01G07100',
(int) 1 => 'OM_17G00490'
),
'acg' => array(
(int) 0 => 'AC00G66780',
(int) 1 => 'AC00G13260'
),
'mpu' => array(
(int) 0 => 'MP02G02130',
(int) 1 => 'MP16G00560'
),
'ota' => array(
(int) 0 => 'OT_01G00020'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_01G07810',
(int) 1 => 'MRCC299_10G05010'
),
'aan' => array(
(int) 0 => 'AA0005G00020',
(int) 1 => 'AA0003G01460',
(int) 2 => 'AA0003G04020',
(int) 3 => 'AA0012G01840'
),
'fcy' => array(
(int) 0 => 'FC022G00800',
(int) 1 => 'FC001G09940'
),
'scp' => array(
(int) 0 => 'SPAC732.02c',
(int) 1 => 'SPAC222.13c',
(int) 2 => 'SPAPB17E12.14c',
(int) 3 => 'SPAC144.17c'
),
'emh' => array(
(int) 0 => 'emh168130',
(int) 1 => 'emh398660',
(int) 2 => 'emh576590',
(int) 3 => 'emh227060',
(int) 4 => 'emh592730',
(int) 5 => 'emh272030',
(int) 6 => 'emh350640',
(int) 7 => 'emh497190',
(int) 8 => 'emh741640',
(int) 9 => 'emh39080',
(int) 10 => 'emh701440',
(int) 11 => 'emh150560',
(int) 12 => 'emh242330',
(int) 13 => 'emh710970',
(int) 14 => 'emh545310',
(int) 15 => 'emh744380',
(int) 16 => 'emh479120',
(int) 17 => 'emh614720',
(int) 18 => 'emh478560'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_011G01130'
),
'orcc809' => array(
(int) 0 => 'ORCC809_16G02230',
(int) 1 => 'ORCC809_01G06520'
)
)
$gene_id = 'AT1G07110'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'AT1G07110'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'CM07G01050'
$gf_placeholder = 'HOM03P000450'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_783G00010',
'e_value' => '2e-21',
'bit_score' => '94.7',
'alignment_length' => '83',
'identity_percentage' => '53.01',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_783G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
Notice (8): Undefined index: common_name [APP/View/Analysis/custom_tree_creation.ctp, line 169]Code Context echo "<td><input type='checkbox' name='selected_genes[]' value='".$similarity_hit['gene_id']."' ".$checked." /></td>\n";
echo "<td>".$this->Html->link($similarity_hit_gene,array("controller"=>"genes","action"=>"view",$similarity_hit_gene),array("target"=>"_blank"))."</td>\n";
echo "<td>".$this->Html->link($similarity_hit['common_name'],array("controller"=>"organism","action"=>"view",urlencode($similarity_hit['common_name'])))."</td>\n";
$viewFile = '/xtras/group/biocomp/plaza/versions/plaza_pico_03/app/View/Analysis/custom_tree_creation.ctp'
$dataForView = array(
'allowed_extra_sequences_types' => array(
'aa' => 'Protein',
'dna' => 'DNA'
),
'allowed_editing_methods' => array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
),
'allowed_tree_programs' => array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
),
'allowed_msa_programs' => array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
),
'allowed_number_blasthits' => array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
),
'similarity_hits_genes' => array(
'AT1G07110' => array(
'gene_id' => 'AT1G07110',
'e_value' => '0.0',
'bit_score' => '1536',
'alignment_length' => '745',
'identity_percentage' => '100.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'ATR_00007G01380' => array(
'gene_id' => 'ATR_00007G01380',
'e_value' => '0.0',
'bit_score' => '1143',
'alignment_length' => '752',
'identity_percentage' => '76.06',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
[maximum depth reached]
)
),
'OS05G07130' => array(
'gene_id' => 'OS05G07130',
'e_value' => '0.0',
'bit_score' => '1059',
'alignment_length' => '740',
'identity_percentage' => '72.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'PP00242G00370' => array(
'gene_id' => 'PP00242G00370',
'e_value' => '0.0',
'bit_score' => '862',
'alignment_length' => '787',
'identity_percentage' => '59.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00215G00480' => array(
'gene_id' => 'PP00215G00480',
'e_value' => '0.0',
'bit_score' => '855',
'alignment_length' => '772',
'identity_percentage' => '59.84',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00235G00510' => array(
'gene_id' => 'PP00235G00510',
'e_value' => '0.0',
'bit_score' => '814',
'alignment_length' => '805',
'identity_percentage' => '55.16',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'PP00414G00150' => array(
'gene_id' => 'PP00414G00150',
'e_value' => '0.0',
'bit_score' => '808',
'alignment_length' => '752',
'identity_percentage' => '57.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'OS03G18310' => array(
'gene_id' => 'OS03G18310',
'e_value' => '0.0',
'bit_score' => '785',
'alignment_length' => '468',
'identity_percentage' => '80.56',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
),
'RCC4223.06g00990' => array(
'gene_id' => 'RCC4223.06g00990',
'e_value' => '4e-133',
'bit_score' => '414',
'alignment_length' => '419',
'identity_percentage' => '49.64',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
[maximum depth reached]
)
),
'CV00G87950' => array(
'gene_id' => 'CV00G87950',
'e_value' => '2e-132',
'bit_score' => '408',
'alignment_length' => '400',
'identity_percentage' => '52.50',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
[maximum depth reached]
)
),
'PI00G64210' => array(
'gene_id' => 'PI00G64210',
'e_value' => '2e-132',
'bit_score' => '412',
'alignment_length' => '419',
'identity_percentage' => '49.88',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
[maximum depth reached]
)
),
'CR16G12950' => array(
'gene_id' => 'CR16G12950',
'e_value' => '1e-125',
'bit_score' => '399',
'alignment_length' => '450',
'identity_percentage' => '45.78',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'ccr56200' => array(
'gene_id' => 'ccr56200',
'e_value' => '2e-124',
'bit_score' => '387',
'alignment_length' => '408',
'identity_percentage' => '47.79',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
[maximum depth reached]
)
),
'VC00G96280' => array(
'gene_id' => 'VC00G96280',
'e_value' => '6e-121',
'bit_score' => '392',
'alignment_length' => '411',
'identity_percentage' => '49.15',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'CR16G02280' => array(
'gene_id' => 'CR16G02280',
'e_value' => '8e-120',
'bit_score' => '392',
'alignment_length' => '436',
'identity_percentage' => '46.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
[maximum depth reached]
)
),
'pte157060' => array(
'gene_id' => 'pte157060',
'e_value' => '9e-120',
'bit_score' => '374',
'alignment_length' => '419',
'identity_percentage' => '43.44',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100004g69' => array(
'gene_id' => 'Naga_100004g69',
'e_value' => '5e-119',
'bit_score' => '375',
'alignment_length' => '407',
'identity_percentage' => '45.45',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'pte98110' => array(
'gene_id' => 'pte98110',
'e_value' => '4e-118',
'bit_score' => '369',
'alignment_length' => '419',
'identity_percentage' => '42.96',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ES0099G00380' => array(
'gene_id' => 'ES0099G00380',
'e_value' => '5e-118',
'bit_score' => '368',
'alignment_length' => '404',
'identity_percentage' => '45.05',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CM14G00850' => array(
'gene_id' => 'CM14G00850',
'e_value' => '2e-117',
'bit_score' => '382',
'alignment_length' => '409',
'identity_percentage' => '45.23',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
[maximum depth reached]
)
),
'gsu43500' => array(
'gene_id' => 'gsu43500',
'e_value' => '4e-117',
'bit_score' => '368',
'alignment_length' => '409',
'identity_percentage' => '46.21',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'AP00G63940' => array(
'gene_id' => 'AP00G63940',
'e_value' => '9e-116',
'bit_score' => '389',
'alignment_length' => '422',
'identity_percentage' => '48.34',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
[maximum depth reached]
)
),
'gsu21500' => array(
'gene_id' => 'gsu21500',
'e_value' => '6e-114',
'bit_score' => '360',
'alignment_length' => '409',
'identity_percentage' => '45.97',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
[maximum depth reached]
)
),
'pte383600' => array(
'gene_id' => 'pte383600',
'e_value' => '2e-113',
'bit_score' => '358',
'alignment_length' => '421',
'identity_percentage' => '41.33',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte648520' => array(
'gene_id' => 'pte648520',
'e_value' => '7e-113',
'bit_score' => '356',
'alignment_length' => '418',
'identity_percentage' => '42.82',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000158571' => array(
'gene_id' => 'ENSG00000158571',
'e_value' => '8e-113',
'bit_score' => '357',
'alignment_length' => '391',
'identity_percentage' => '47.31',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000170525' => array(
'gene_id' => 'ENSG00000170525',
'e_value' => '9e-112',
'bit_score' => '356',
'alignment_length' => '403',
'identity_percentage' => '46.40',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'TP02G06550' => array(
'gene_id' => 'TP02G06550',
'e_value' => '1e-110',
'bit_score' => '348',
'alignment_length' => '399',
'identity_percentage' => '44.11',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000026773' => array(
'gene_id' => 'ENSMUSG00000026773',
'e_value' => '6e-110',
'bit_score' => '352',
'alignment_length' => '403',
'identity_percentage' => '46.15',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00019295' => array(
'gene_id' => 'WBGene00019295',
'e_value' => '8e-109',
'bit_score' => '346',
'alignment_length' => '399',
'identity_percentage' => '45.11',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'ENSG00000114268' => array(
'gene_id' => 'ENSG00000114268',
'e_value' => '2e-108',
'bit_score' => '345',
'alignment_length' => '391',
'identity_percentage' => '46.29',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
[maximum depth reached]
)
),
'FBgn0027621' => array(
'gene_id' => 'FBgn0027621',
'e_value' => '2e-107',
'bit_score' => '350',
'alignment_length' => '402',
'identity_percentage' => '44.78',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
[maximum depth reached]
)
),
'phs288590' => array(
'gene_id' => 'phs288590',
'e_value' => '1e-106',
'bit_score' => '350',
'alignment_length' => '411',
'identity_percentage' => '43.55',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G04850' => array(
'gene_id' => 'PTI_01G04850',
'e_value' => '3e-106',
'bit_score' => '343',
'alignment_length' => '477',
'identity_percentage' => '40.88',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'YJL155C' => array(
'gene_id' => 'YJL155C',
'e_value' => '3e-105',
'bit_score' => '336',
'alignment_length' => '410',
'identity_percentage' => '44.15',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0276253' => array(
'gene_id' => 'DDB_G0276253',
'e_value' => '6e-105',
'bit_score' => '337',
'alignment_length' => '410',
'identity_percentage' => '43.90',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'WBGene00022456' => array(
'gene_id' => 'WBGene00022456',
'e_value' => '5e-102',
'bit_score' => '328',
'alignment_length' => '403',
'identity_percentage' => '45.16',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
[maximum depth reached]
)
),
'OL01G00070' => array(
'gene_id' => 'OL01G00070',
'e_value' => '5e-102',
'bit_score' => '330',
'alignment_length' => '445',
'identity_percentage' => '42.47',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'OM_01G07100' => array(
'gene_id' => 'OM_01G07100',
'e_value' => '3e-101',
'bit_score' => '333',
'alignment_length' => '441',
'identity_percentage' => '43.31',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'AC00G66780' => array(
'gene_id' => 'AC00G66780',
'e_value' => '9e-101',
'bit_score' => '320',
'alignment_length' => '334',
'identity_percentage' => '50.00',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'MP02G02130' => array(
'gene_id' => 'MP02G02130',
'e_value' => '1e-100',
'bit_score' => '333',
'alignment_length' => '479',
'identity_percentage' => '41.75',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'OT_01G00020' => array(
'gene_id' => 'OT_01G00020',
'e_value' => '5e-99',
'bit_score' => '326',
'alignment_length' => '444',
'identity_percentage' => '41.67',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_01G07810' => array(
'gene_id' => 'MRCC299_01G07810',
'e_value' => '3e-97',
'bit_score' => '314',
'alignment_length' => '412',
'identity_percentage' => '43.69',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'AA0005G00020' => array(
'gene_id' => 'AA0005G00020',
'e_value' => '2e-95',
'bit_score' => '309',
'alignment_length' => '419',
'identity_percentage' => '41.29',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100015g63' => array(
'gene_id' => 'Naga_100015g63',
'e_value' => '7e-95',
'bit_score' => '322',
'alignment_length' => '444',
'identity_percentage' => '37.39',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'FC022G00800' => array(
'gene_id' => 'FC022G00800',
'e_value' => '1e-93',
'bit_score' => '310',
'alignment_length' => '474',
'identity_percentage' => '39.03',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'VC00G133590' => array(
'gene_id' => 'VC00G133590',
'e_value' => '7e-93',
'bit_score' => '313',
'alignment_length' => '370',
'identity_percentage' => '45.68',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
[maximum depth reached]
)
),
'pte489150' => array(
'gene_id' => 'pte489150',
'e_value' => '1e-90',
'bit_score' => '294',
'alignment_length' => '362',
'identity_percentage' => '43.37',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100030g26' => array(
'gene_id' => 'Naga_100030g26',
'e_value' => '1e-86',
'bit_score' => '289',
'alignment_length' => '424',
'identity_percentage' => '39.62',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'YIL107C' => array(
'gene_id' => 'YIL107C',
'e_value' => '3e-85',
'bit_score' => '293',
'alignment_length' => '434',
'identity_percentage' => '41.47',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
[maximum depth reached]
)
),
'phs224790' => array(
'gene_id' => 'phs224790',
'e_value' => '8e-83',
'bit_score' => '280',
'alignment_length' => '414',
'identity_percentage' => '37.68',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'SPAC732.02c' => array(
'gene_id' => 'SPAC732.02c',
'e_value' => '2e-82',
'bit_score' => '275',
'alignment_length' => '407',
'identity_percentage' => '37.35',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'ENSMUSG00000101904' => array(
'gene_id' => 'ENSMUSG00000101904',
'e_value' => '5e-81',
'bit_score' => '270',
'alignment_length' => '328',
'identity_percentage' => '43.29',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
[maximum depth reached]
)
),
'SPAC222.13c' => array(
'gene_id' => 'SPAC222.13c',
'e_value' => '3e-79',
'bit_score' => '271',
'alignment_length' => '435',
'identity_percentage' => '37.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'phs98670' => array(
'gene_id' => 'phs98670',
'e_value' => '4e-74',
'bit_score' => '262',
'alignment_length' => '433',
'identity_percentage' => '35.33',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
[maximum depth reached]
)
),
'AA0003G01460' => array(
'gene_id' => 'AA0003G01460',
'e_value' => '3e-72',
'bit_score' => '250',
'alignment_length' => '428',
'identity_percentage' => '36.68',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'pte134780' => array(
'gene_id' => 'pte134780',
'e_value' => '9e-72',
'bit_score' => '246',
'alignment_length' => '408',
'identity_percentage' => '33.09',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'pte519000' => array(
'gene_id' => 'pte519000',
'e_value' => '7e-71',
'bit_score' => '244',
'alignment_length' => '402',
'identity_percentage' => '32.84',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'emh168130' => array(
'gene_id' => 'emh168130',
'e_value' => '2e-70',
'bit_score' => '245',
'alignment_length' => '474',
'identity_percentage' => '33.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ES0048G00640' => array(
'gene_id' => 'ES0048G00640',
'e_value' => '2e-65',
'bit_score' => '233',
'alignment_length' => '401',
'identity_percentage' => '35.41',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_011G01130' => array(
'gene_id' => 'CNC64A_011G01130',
'e_value' => '2e-64',
'bit_score' => '222',
'alignment_length' => '245',
'identity_percentage' => '48.16',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
[maximum depth reached]
)
),
'ES0176G00050' => array(
'gene_id' => 'ES0176G00050',
'e_value' => '6e-64',
'bit_score' => '226',
'alignment_length' => '409',
'identity_percentage' => '34.96',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'ES0133G00230' => array(
'gene_id' => 'ES0133G00230',
'e_value' => '3e-63',
'bit_score' => '228',
'alignment_length' => '511',
'identity_percentage' => '31.12',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'TP18G02360' => array(
'gene_id' => 'TP18G02360',
'e_value' => '1e-62',
'bit_score' => '221',
'alignment_length' => '416',
'identity_percentage' => '35.10',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
[maximum depth reached]
)
),
'AT3G30200' => array(
'gene_id' => 'AT3G30200',
'e_value' => '2e-60',
'bit_score' => '218',
'alignment_length' => '116',
'identity_percentage' => '93.10',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'SPAPB17E12.14c' => array(
'gene_id' => 'SPAPB17E12.14c',
'e_value' => '1e-55',
'bit_score' => '207',
'alignment_length' => '288',
'identity_percentage' => '39.58',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'AA0003G04020' => array(
'gene_id' => 'AA0003G04020',
'e_value' => '7e-55',
'bit_score' => '196',
'alignment_length' => '302',
'identity_percentage' => '39.74',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'OM_17G00490' => array(
'gene_id' => 'OM_17G00490',
'e_value' => '9e-53',
'bit_score' => '197',
'alignment_length' => '455',
'identity_percentage' => '31.65',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
[maximum depth reached]
)
),
'emh398660' => array(
'gene_id' => 'emh398660',
'e_value' => '2e-49',
'bit_score' => '179',
'alignment_length' => '234',
'identity_percentage' => '43.16',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'FC001G09940' => array(
'gene_id' => 'FC001G09940',
'e_value' => '6e-49',
'bit_score' => '187',
'alignment_length' => '509',
'identity_percentage' => '27.31',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
[maximum depth reached]
)
),
'emh576590' => array(
'gene_id' => 'emh576590',
'e_value' => '1e-48',
'bit_score' => '184',
'alignment_length' => '414',
'identity_percentage' => '28.99',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'MP16G00560' => array(
'gene_id' => 'MP16G00560',
'e_value' => '3e-48',
'bit_score' => '182',
'alignment_length' => '449',
'identity_percentage' => '30.07',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
[maximum depth reached]
)
),
'ES0151G00100' => array(
'gene_id' => 'ES0151G00100',
'e_value' => '3e-47',
'bit_score' => '181',
'alignment_length' => '178',
'identity_percentage' => '45.51',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'emh227060' => array(
'gene_id' => 'emh227060',
'e_value' => '5e-47',
'bit_score' => '179',
'alignment_length' => '419',
'identity_percentage' => '29.36',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'OL16G00450' => array(
'gene_id' => 'OL16G00450',
'e_value' => '2e-46',
'bit_score' => '170',
'alignment_length' => '239',
'identity_percentage' => '42.26',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
[maximum depth reached]
)
),
'emh592730' => array(
'gene_id' => 'emh592730',
'e_value' => '5e-46',
'bit_score' => '177',
'alignment_length' => '440',
'identity_percentage' => '30.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'MRCC299_10G05010' => array(
'gene_id' => 'MRCC299_10G05010',
'e_value' => '9e-46',
'bit_score' => '172',
'alignment_length' => '317',
'identity_percentage' => '34.07',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
[maximum depth reached]
)
),
'AA0012G01840' => array(
'gene_id' => 'AA0012G01840',
'e_value' => '6e-44',
'bit_score' => '173',
'alignment_length' => '417',
'identity_percentage' => '30.22',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
[maximum depth reached]
)
),
'emh272030' => array(
'gene_id' => 'emh272030',
'e_value' => '3e-43',
'bit_score' => '169',
'alignment_length' => '458',
'identity_percentage' => '28.17',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh350640' => array(
'gene_id' => 'emh350640',
'e_value' => '9e-43',
'bit_score' => '168',
'alignment_length' => '421',
'identity_percentage' => '30.40',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_16G02230' => array(
'gene_id' => 'ORCC809_16G02230',
'e_value' => '2e-41',
'bit_score' => '155',
'alignment_length' => '233',
'identity_percentage' => '40.77',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0282759' => array(
'gene_id' => 'DDB_G0282759',
'e_value' => '2e-40',
'bit_score' => '159',
'alignment_length' => '162',
'identity_percentage' => '47.53',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'SPAC144.17c' => array(
'gene_id' => 'SPAC144.17c',
'e_value' => '2e-39',
'bit_score' => '155',
'alignment_length' => '408',
'identity_percentage' => '29.66',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
[maximum depth reached]
)
),
'emh497190' => array(
'gene_id' => 'emh497190',
'e_value' => '1e-38',
'bit_score' => '153',
'alignment_length' => '246',
'identity_percentage' => '35.37',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh741640' => array(
'gene_id' => 'emh741640',
'e_value' => '7e-38',
'bit_score' => '149',
'alignment_length' => '136',
'identity_percentage' => '52.21',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ORCC809_01G06520' => array(
'gene_id' => 'ORCC809_01G06520',
'e_value' => '7e-38',
'bit_score' => '147',
'alignment_length' => '252',
'identity_percentage' => '38.10',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
[maximum depth reached]
)
),
'PTI_01G10910' => array(
'gene_id' => 'PTI_01G10910',
'e_value' => '1e-35',
'bit_score' => '147',
'alignment_length' => '289',
'identity_percentage' => '32.18',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
[maximum depth reached]
)
),
'emh39080' => array(
'gene_id' => 'emh39080',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh701440' => array(
'gene_id' => 'emh701440',
'e_value' => '4e-30',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh150560' => array(
'gene_id' => 'emh150560',
'e_value' => '4e-30',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh242330' => array(
'gene_id' => 'emh242330',
'e_value' => '3e-29',
'bit_score' => '125',
'alignment_length' => '414',
'identity_percentage' => '26.57',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh710970' => array(
'gene_id' => 'emh710970',
'e_value' => '5e-29',
'bit_score' => '124',
'alignment_length' => '414',
'identity_percentage' => '26.57',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh545310' => array(
'gene_id' => 'emh545310',
'e_value' => '7e-25',
'bit_score' => '113',
'alignment_length' => '266',
'identity_percentage' => '27.82',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'emh744380' => array(
'gene_id' => 'emh744380',
'e_value' => '2e-21',
'bit_score' => '103',
'alignment_length' => '290',
'identity_percentage' => '25.52',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'CNC64A_783G00010' => array(
'gene_id' => 'CNC64A_783G00010',
'e_value' => '2e-21',
'bit_score' => '94.7',
'alignment_length' => '83',
'identity_percentage' => '53.01',
'gf' => array(
[maximum depth reached]
)
),
'emh479120' => array(
'gene_id' => 'emh479120',
'e_value' => '1e-20',
'bit_score' => '96.7',
'alignment_length' => '219',
'identity_percentage' => '28.77',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'ES0048G00310' => array(
'gene_id' => 'ES0048G00310',
'e_value' => '2e-17',
'bit_score' => '84.3',
'alignment_length' => '81',
'identity_percentage' => '44.44',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
[maximum depth reached]
)
),
'emh614720' => array(
'gene_id' => 'emh614720',
'e_value' => '3e-16',
'bit_score' => '84.0',
'alignment_length' => '222',
'identity_percentage' => '28.83',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'Naga_100969g3' => array(
'gene_id' => 'Naga_100969g3',
'e_value' => '6e-15',
'bit_score' => '77.0',
'alignment_length' => '76',
'identity_percentage' => '40.79',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
[maximum depth reached]
)
),
'emh478560' => array(
'gene_id' => 'emh478560',
'e_value' => '2e-08',
'bit_score' => '58.5',
'alignment_length' => '110',
'identity_percentage' => '31.82',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
[maximum depth reached]
)
),
'AT3G50520' => array(
'gene_id' => 'AT3G50520',
'e_value' => '4e-07',
'bit_score' => '55.5',
'alignment_length' => '187',
'identity_percentage' => '26.74',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'AC00G13260' => array(
'gene_id' => 'AC00G13260',
'e_value' => '7e-07',
'bit_score' => '55.1',
'alignment_length' => '167',
'identity_percentage' => '29.34',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
[maximum depth reached]
)
),
'PP00205G00220' => array(
'gene_id' => 'PP00205G00220',
'e_value' => '1e-06',
'bit_score' => '55.5',
'alignment_length' => '206',
'identity_percentage' => '28.16',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
[maximum depth reached]
)
),
'AT5G04120' => array(
'gene_id' => 'AT5G04120',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '161',
'identity_percentage' => '30.43',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
[maximum depth reached]
)
),
'DDB_G0280831' => array(
'gene_id' => 'DDB_G0280831',
'e_value' => '2e-06',
'bit_score' => '55.5',
'alignment_length' => '176',
'identity_percentage' => '27.84',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
[maximum depth reached]
)
),
'pte489130' => array(
'gene_id' => 'pte489130',
'e_value' => '2e-06',
'bit_score' => '51.2',
'alignment_length' => '48',
'identity_percentage' => '41.67',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
[maximum depth reached]
)
),
'OS08G37140' => array(
'gene_id' => 'OS08G37140',
'e_value' => '5e-06',
'bit_score' => '53.1',
'alignment_length' => '185',
'identity_percentage' => '29.19',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
[maximum depth reached]
)
)
),
'similarity_hits_species' => array(
'ath' => array(
(int) 0 => 'AT1G07110',
(int) 1 => 'AT3G30200',
(int) 2 => 'AT3G50520',
(int) 3 => 'AT5G04120'
),
'atr' => array(
(int) 0 => 'ATR_00007G01380'
),
'osa' => array(
(int) 0 => 'OS05G07130',
(int) 1 => 'OS03G18310',
(int) 2 => 'OS08G37140'
),
'ppa' => array(
(int) 0 => 'PP00242G00370',
(int) 1 => 'PP00215G00480',
(int) 2 => 'PP00235G00510',
(int) 3 => 'PP00414G00150',
(int) 4 => 'PP00205G00220'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.06g00990'
),
'cvu' => array(
(int) 0 => 'CV00G87950'
),
'pse3' => array(
(int) 0 => 'PI00G64210'
),
'cre' => array(
(int) 0 => 'CR16G12950',
(int) 1 => 'CR16G02280'
),
'ccr' => array(
(int) 0 => 'ccr56200'
),
'vca' => array(
(int) 0 => 'VC00G96280',
(int) 1 => 'VC00G133590'
),
'pte' => array(
(int) 0 => 'pte157060',
(int) 1 => 'pte98110',
(int) 2 => 'pte383600',
(int) 3 => 'pte648520',
(int) 4 => 'pte489150',
(int) 5 => 'pte134780',
(int) 6 => 'pte519000',
(int) 7 => 'pte489130'
),
'nga' => array(
(int) 0 => 'Naga_100004g69',
(int) 1 => 'Naga_100015g63',
(int) 2 => 'Naga_100030g26',
(int) 3 => 'Naga_100969g3'
),
'esi' => array(
(int) 0 => 'ES0099G00380',
(int) 1 => 'ES0048G00640',
(int) 2 => 'ES0176G00050',
(int) 3 => 'ES0133G00230',
(int) 4 => 'ES0151G00100',
(int) 5 => 'ES0048G00310'
),
'cme' => array(
(int) 0 => 'CM14G00850'
),
'gsu' => array(
(int) 0 => 'gsu43500',
(int) 1 => 'gsu21500'
),
'apr' => array(
(int) 0 => 'AP00G63940'
),
'hom' => array(
(int) 0 => 'ENSG00000158571',
(int) 1 => 'ENSG00000170525',
(int) 2 => 'ENSG00000114268'
),
'tps' => array(
(int) 0 => 'TP02G06550',
(int) 1 => 'TP18G02360'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000026773',
(int) 1 => 'ENSMUSG00000101904'
),
'cel' => array(
(int) 0 => 'WBGene00019295',
(int) 1 => 'WBGene00022456'
),
'drm' => array(
(int) 0 => 'FBgn0027621'
),
'phs' => array(
(int) 0 => 'phs288590',
(int) 1 => 'phs224790',
(int) 2 => 'phs98670'
),
'ptri' => array(
(int) 0 => 'PTI_01G04850',
(int) 1 => 'PTI_01G10910'
),
'sac' => array(
(int) 0 => 'YJL155C',
(int) 1 => 'YIL107C'
),
'ddi' => array(
(int) 0 => 'DDB_G0276253',
(int) 1 => 'DDB_G0282759',
(int) 2 => 'DDB_G0280831'
),
'olu' => array(
(int) 0 => 'OL01G00070',
(int) 1 => 'OL16G00450'
),
'ome' => array(
(int) 0 => 'OM_01G07100',
(int) 1 => 'OM_17G00490'
),
'acg' => array(
(int) 0 => 'AC00G66780',
(int) 1 => 'AC00G13260'
),
'mpu' => array(
(int) 0 => 'MP02G02130',
(int) 1 => 'MP16G00560'
),
'ota' => array(
(int) 0 => 'OT_01G00020'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_01G07810',
(int) 1 => 'MRCC299_10G05010'
),
'aan' => array(
(int) 0 => 'AA0005G00020',
(int) 1 => 'AA0003G01460',
(int) 2 => 'AA0003G04020',
(int) 3 => 'AA0012G01840'
),
'fcy' => array(
(int) 0 => 'FC022G00800',
(int) 1 => 'FC001G09940'
),
'scp' => array(
(int) 0 => 'SPAC732.02c',
(int) 1 => 'SPAC222.13c',
(int) 2 => 'SPAPB17E12.14c',
(int) 3 => 'SPAC144.17c'
),
'emh' => array(
(int) 0 => 'emh168130',
(int) 1 => 'emh398660',
(int) 2 => 'emh576590',
(int) 3 => 'emh227060',
(int) 4 => 'emh592730',
(int) 5 => 'emh272030',
(int) 6 => 'emh350640',
(int) 7 => 'emh497190',
(int) 8 => 'emh741640',
(int) 9 => 'emh39080',
(int) 10 => 'emh701440',
(int) 11 => 'emh150560',
(int) 12 => 'emh242330',
(int) 13 => 'emh710970',
(int) 14 => 'emh545310',
(int) 15 => 'emh744380',
(int) 16 => 'emh479120',
(int) 17 => 'emh614720',
(int) 18 => 'emh478560'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_011G01130'
),
'orcc809' => array(
(int) 0 => 'ORCC809_16G02230',
(int) 1 => 'ORCC809_01G06520'
)
),
'gene_id' => 'AT1G07110',
'all_species_index' => array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'all_species' => array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
),
'gene_family_types_information' => array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
),
'gene_family_types_configuration' => array(),
'data_identifier' => 'AT1G07110',
'data_type' => 'gene_id',
'allow_async_use' => true,
'gene_placeholder' => 'CM07G01050',
'gf_placeholder' => 'HOM03P000450',
'title_for_layout' => 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
)
$allowed_extra_sequences_types = array(
'aa' => 'Protein',
'dna' => 'DNA'
)
$allowed_editing_methods = array(
'column' => 'Positions only',
'row' => 'Genes only',
'column_row' => 'Positions and Genes',
'none' => 'No editing'
)
$allowed_tree_programs = array(
'fasttree' => 'FastTree',
'iqtree' => 'IQ-TREE (includes model testing)',
'raxml' => 'RAxML',
'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
'muscle' => 'MUSCLE',
'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
(int) 0 => 'all',
(int) 1 => (int) 20,
(int) 2 => (int) 10,
(int) 3 => (int) 5,
(int) 4 => (int) 1
)
$similarity_hits_genes = array(
'AT1G07110' => array(
'gene_id' => 'AT1G07110',
'e_value' => '0.0',
'bit_score' => '1536',
'alignment_length' => '745',
'identity_percentage' => '100.00',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ATR_00007G01380' => array(
'gene_id' => 'ATR_00007G01380',
'e_value' => '0.0',
'bit_score' => '1143',
'alignment_length' => '752',
'identity_percentage' => '76.06',
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OS05G07130' => array(
'gene_id' => 'OS05G07130',
'e_value' => '0.0',
'bit_score' => '1059',
'alignment_length' => '740',
'identity_percentage' => '72.03',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PP00242G00370' => array(
'gene_id' => 'PP00242G00370',
'e_value' => '0.0',
'bit_score' => '862',
'alignment_length' => '787',
'identity_percentage' => '59.59',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PP00215G00480' => array(
'gene_id' => 'PP00215G00480',
'e_value' => '0.0',
'bit_score' => '855',
'alignment_length' => '772',
'identity_percentage' => '59.84',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PP00235G00510' => array(
'gene_id' => 'PP00235G00510',
'e_value' => '0.0',
'bit_score' => '814',
'alignment_length' => '805',
'identity_percentage' => '55.16',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PP00414G00150' => array(
'gene_id' => 'PP00414G00150',
'e_value' => '0.0',
'bit_score' => '808',
'alignment_length' => '752',
'identity_percentage' => '57.58',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OS03G18310' => array(
'gene_id' => 'OS03G18310',
'e_value' => '0.0',
'bit_score' => '785',
'alignment_length' => '468',
'identity_percentage' => '80.56',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'RCC4223.06g00990' => array(
'gene_id' => 'RCC4223.06g00990',
'e_value' => '4e-133',
'bit_score' => '414',
'alignment_length' => '419',
'identity_percentage' => '49.64',
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'CV00G87950' => array(
'gene_id' => 'CV00G87950',
'e_value' => '2e-132',
'bit_score' => '408',
'alignment_length' => '400',
'identity_percentage' => '52.50',
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PI00G64210' => array(
'gene_id' => 'PI00G64210',
'e_value' => '2e-132',
'bit_score' => '412',
'alignment_length' => '419',
'identity_percentage' => '49.88',
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'CR16G12950' => array(
'gene_id' => 'CR16G12950',
'e_value' => '1e-125',
'bit_score' => '399',
'alignment_length' => '450',
'identity_percentage' => '45.78',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ccr56200' => array(
'gene_id' => 'ccr56200',
'e_value' => '2e-124',
'bit_score' => '387',
'alignment_length' => '408',
'identity_percentage' => '47.79',
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'VC00G96280' => array(
'gene_id' => 'VC00G96280',
'e_value' => '6e-121',
'bit_score' => '392',
'alignment_length' => '411',
'identity_percentage' => '49.15',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'CR16G02280' => array(
'gene_id' => 'CR16G02280',
'e_value' => '8e-120',
'bit_score' => '392',
'alignment_length' => '436',
'identity_percentage' => '46.79',
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'pte157060' => array(
'gene_id' => 'pte157060',
'e_value' => '9e-120',
'bit_score' => '374',
'alignment_length' => '419',
'identity_percentage' => '43.44',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'Naga_100004g69' => array(
'gene_id' => 'Naga_100004g69',
'e_value' => '5e-119',
'bit_score' => '375',
'alignment_length' => '407',
'identity_percentage' => '45.45',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'pte98110' => array(
'gene_id' => 'pte98110',
'e_value' => '4e-118',
'bit_score' => '369',
'alignment_length' => '419',
'identity_percentage' => '42.96',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ES0099G00380' => array(
'gene_id' => 'ES0099G00380',
'e_value' => '5e-118',
'bit_score' => '368',
'alignment_length' => '404',
'identity_percentage' => '45.05',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'CM14G00850' => array(
'gene_id' => 'CM14G00850',
'e_value' => '2e-117',
'bit_score' => '382',
'alignment_length' => '409',
'identity_percentage' => '45.23',
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'gsu43500' => array(
'gene_id' => 'gsu43500',
'e_value' => '4e-117',
'bit_score' => '368',
'alignment_length' => '409',
'identity_percentage' => '46.21',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'AP00G63940' => array(
'gene_id' => 'AP00G63940',
'e_value' => '9e-116',
'bit_score' => '389',
'alignment_length' => '422',
'identity_percentage' => '48.34',
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'gf' => array(
'HOMFAM' => 'HOM03P004817',
'ORTHOFAM' => 'ORTHO03P004621'
)
),
'gsu21500' => array(
'gene_id' => 'gsu21500',
'e_value' => '6e-114',
'bit_score' => '360',
'alignment_length' => '409',
'identity_percentage' => '45.97',
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'pte383600' => array(
'gene_id' => 'pte383600',
'e_value' => '2e-113',
'bit_score' => '358',
'alignment_length' => '421',
'identity_percentage' => '41.33',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'pte648520' => array(
'gene_id' => 'pte648520',
'e_value' => '7e-113',
'bit_score' => '356',
'alignment_length' => '418',
'identity_percentage' => '42.82',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSG00000158571' => array(
'gene_id' => 'ENSG00000158571',
'e_value' => '8e-113',
'bit_score' => '357',
'alignment_length' => '391',
'identity_percentage' => '47.31',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSG00000170525' => array(
'gene_id' => 'ENSG00000170525',
'e_value' => '9e-112',
'bit_score' => '356',
'alignment_length' => '403',
'identity_percentage' => '46.40',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'TP02G06550' => array(
'gene_id' => 'TP02G06550',
'e_value' => '1e-110',
'bit_score' => '348',
'alignment_length' => '399',
'identity_percentage' => '44.11',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSMUSG00000026773' => array(
'gene_id' => 'ENSMUSG00000026773',
'e_value' => '6e-110',
'bit_score' => '352',
'alignment_length' => '403',
'identity_percentage' => '46.15',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'WBGene00019295' => array(
'gene_id' => 'WBGene00019295',
'e_value' => '8e-109',
'bit_score' => '346',
'alignment_length' => '399',
'identity_percentage' => '45.11',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSG00000114268' => array(
'gene_id' => 'ENSG00000114268',
'e_value' => '2e-108',
'bit_score' => '345',
'alignment_length' => '391',
'identity_percentage' => '46.29',
'species' => 'hom',
'common_name' => 'Homo sapiens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'FBgn0027621' => array(
'gene_id' => 'FBgn0027621',
'e_value' => '2e-107',
'bit_score' => '350',
'alignment_length' => '402',
'identity_percentage' => '44.78',
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'phs288590' => array(
'gene_id' => 'phs288590',
'e_value' => '1e-106',
'bit_score' => '350',
'alignment_length' => '411',
'identity_percentage' => '43.55',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PTI_01G04850' => array(
'gene_id' => 'PTI_01G04850',
'e_value' => '3e-106',
'bit_score' => '343',
'alignment_length' => '477',
'identity_percentage' => '40.88',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'YJL155C' => array(
'gene_id' => 'YJL155C',
'e_value' => '3e-105',
'bit_score' => '336',
'alignment_length' => '410',
'identity_percentage' => '44.15',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'DDB_G0276253' => array(
'gene_id' => 'DDB_G0276253',
'e_value' => '6e-105',
'bit_score' => '337',
'alignment_length' => '410',
'identity_percentage' => '43.90',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'WBGene00022456' => array(
'gene_id' => 'WBGene00022456',
'e_value' => '5e-102',
'bit_score' => '328',
'alignment_length' => '403',
'identity_percentage' => '45.16',
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OL01G00070' => array(
'gene_id' => 'OL01G00070',
'e_value' => '5e-102',
'bit_score' => '330',
'alignment_length' => '445',
'identity_percentage' => '42.47',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OM_01G07100' => array(
'gene_id' => 'OM_01G07100',
'e_value' => '3e-101',
'bit_score' => '333',
'alignment_length' => '441',
'identity_percentage' => '43.31',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'AC00G66780' => array(
'gene_id' => 'AC00G66780',
'e_value' => '9e-101',
'bit_score' => '320',
'alignment_length' => '334',
'identity_percentage' => '50.00',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'MP02G02130' => array(
'gene_id' => 'MP02G02130',
'e_value' => '1e-100',
'bit_score' => '333',
'alignment_length' => '479',
'identity_percentage' => '41.75',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'OT_01G00020' => array(
'gene_id' => 'OT_01G00020',
'e_value' => '5e-99',
'bit_score' => '326',
'alignment_length' => '444',
'identity_percentage' => '41.67',
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'MRCC299_01G07810' => array(
'gene_id' => 'MRCC299_01G07810',
'e_value' => '3e-97',
'bit_score' => '314',
'alignment_length' => '412',
'identity_percentage' => '43.69',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'AA0005G00020' => array(
'gene_id' => 'AA0005G00020',
'e_value' => '2e-95',
'bit_score' => '309',
'alignment_length' => '419',
'identity_percentage' => '41.29',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'Naga_100015g63' => array(
'gene_id' => 'Naga_100015g63',
'e_value' => '7e-95',
'bit_score' => '322',
'alignment_length' => '444',
'identity_percentage' => '37.39',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'FC022G00800' => array(
'gene_id' => 'FC022G00800',
'e_value' => '1e-93',
'bit_score' => '310',
'alignment_length' => '474',
'identity_percentage' => '39.03',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'VC00G133590' => array(
'gene_id' => 'VC00G133590',
'e_value' => '7e-93',
'bit_score' => '313',
'alignment_length' => '370',
'identity_percentage' => '45.68',
'species' => 'vca',
'common_name' => 'Volvox carteri',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P038493'
)
),
'pte489150' => array(
'gene_id' => 'pte489150',
'e_value' => '1e-90',
'bit_score' => '294',
'alignment_length' => '362',
'identity_percentage' => '43.37',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'Naga_100030g26' => array(
'gene_id' => 'Naga_100030g26',
'e_value' => '1e-86',
'bit_score' => '289',
'alignment_length' => '424',
'identity_percentage' => '39.62',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'YIL107C' => array(
'gene_id' => 'YIL107C',
'e_value' => '3e-85',
'bit_score' => '293',
'alignment_length' => '434',
'identity_percentage' => '41.47',
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'phs224790' => array(
'gene_id' => 'phs224790',
'e_value' => '8e-83',
'bit_score' => '280',
'alignment_length' => '414',
'identity_percentage' => '37.68',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'SPAC732.02c' => array(
'gene_id' => 'SPAC732.02c',
'e_value' => '2e-82',
'bit_score' => '275',
'alignment_length' => '407',
'identity_percentage' => '37.35',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ENSMUSG00000101904' => array(
'gene_id' => 'ENSMUSG00000101904',
'e_value' => '5e-81',
'bit_score' => '270',
'alignment_length' => '328',
'identity_percentage' => '43.29',
'species' => 'mus',
'common_name' => 'Mus musculus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'SPAC222.13c' => array(
'gene_id' => 'SPAC222.13c',
'e_value' => '3e-79',
'bit_score' => '271',
'alignment_length' => '435',
'identity_percentage' => '37.24',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P150224'
)
),
'phs98670' => array(
'gene_id' => 'phs98670',
'e_value' => '4e-74',
'bit_score' => '262',
'alignment_length' => '433',
'identity_percentage' => '35.33',
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'AA0003G01460' => array(
'gene_id' => 'AA0003G01460',
'e_value' => '3e-72',
'bit_score' => '250',
'alignment_length' => '428',
'identity_percentage' => '36.68',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'pte134780' => array(
'gene_id' => 'pte134780',
'e_value' => '9e-72',
'bit_score' => '246',
'alignment_length' => '408',
'identity_percentage' => '33.09',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P045096'
)
),
'pte519000' => array(
'gene_id' => 'pte519000',
'e_value' => '7e-71',
'bit_score' => '244',
'alignment_length' => '402',
'identity_percentage' => '32.84',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P045096'
)
),
'emh168130' => array(
'gene_id' => 'emh168130',
'e_value' => '2e-70',
'bit_score' => '245',
'alignment_length' => '474',
'identity_percentage' => '33.54',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ES0048G00640' => array(
'gene_id' => 'ES0048G00640',
'e_value' => '2e-65',
'bit_score' => '233',
'alignment_length' => '401',
'identity_percentage' => '35.41',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P181999'
)
),
'CNC64A_011G01130' => array(
'gene_id' => 'CNC64A_011G01130',
'e_value' => '2e-64',
'bit_score' => '222',
'alignment_length' => '245',
'identity_percentage' => '48.16',
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'ES0176G00050' => array(
'gene_id' => 'ES0176G00050',
'e_value' => '6e-64',
'bit_score' => '226',
'alignment_length' => '409',
'identity_percentage' => '34.96',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'ES0133G00230' => array(
'gene_id' => 'ES0133G00230',
'e_value' => '3e-63',
'bit_score' => '228',
'alignment_length' => '511',
'identity_percentage' => '31.12',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P207885'
)
),
'TP18G02360' => array(
'gene_id' => 'TP18G02360',
'e_value' => '1e-62',
'bit_score' => '221',
'alignment_length' => '416',
'identity_percentage' => '35.10',
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'AT3G30200' => array(
'gene_id' => 'AT3G30200',
'e_value' => '2e-60',
'bit_score' => '218',
'alignment_length' => '116',
'identity_percentage' => '93.10',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P018721',
'ORTHOFAM' => 'ORTHO03P049819'
)
),
'SPAPB17E12.14c' => array(
'gene_id' => 'SPAPB17E12.14c',
'e_value' => '1e-55',
'bit_score' => '207',
'alignment_length' => '288',
'identity_percentage' => '39.58',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'AA0003G04020' => array(
'gene_id' => 'AA0003G04020',
'e_value' => '7e-55',
'bit_score' => '196',
'alignment_length' => '302',
'identity_percentage' => '39.74',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'OM_17G00490' => array(
'gene_id' => 'OM_17G00490',
'e_value' => '9e-53',
'bit_score' => '197',
'alignment_length' => '455',
'identity_percentage' => '31.65',
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'emh398660' => array(
'gene_id' => 'emh398660',
'e_value' => '2e-49',
'bit_score' => '179',
'alignment_length' => '234',
'identity_percentage' => '43.16',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'FC001G09940' => array(
'gene_id' => 'FC001G09940',
'e_value' => '6e-49',
'bit_score' => '187',
'alignment_length' => '509',
'identity_percentage' => '27.31',
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'emh576590' => array(
'gene_id' => 'emh576590',
'e_value' => '1e-48',
'bit_score' => '184',
'alignment_length' => '414',
'identity_percentage' => '28.99',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'MP16G00560' => array(
'gene_id' => 'MP16G00560',
'e_value' => '3e-48',
'bit_score' => '182',
'alignment_length' => '449',
'identity_percentage' => '30.07',
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'ES0151G00100' => array(
'gene_id' => 'ES0151G00100',
'e_value' => '3e-47',
'bit_score' => '181',
'alignment_length' => '178',
'identity_percentage' => '45.51',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P106405'
)
),
'emh227060' => array(
'gene_id' => 'emh227060',
'e_value' => '5e-47',
'bit_score' => '179',
'alignment_length' => '419',
'identity_percentage' => '29.36',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'OL16G00450' => array(
'gene_id' => 'OL16G00450',
'e_value' => '2e-46',
'bit_score' => '170',
'alignment_length' => '239',
'identity_percentage' => '42.26',
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'emh592730' => array(
'gene_id' => 'emh592730',
'e_value' => '5e-46',
'bit_score' => '177',
'alignment_length' => '440',
'identity_percentage' => '30.00',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'MRCC299_10G05010' => array(
'gene_id' => 'MRCC299_10G05010',
'e_value' => '9e-46',
'bit_score' => '172',
'alignment_length' => '317',
'identity_percentage' => '34.07',
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'AA0012G01840' => array(
'gene_id' => 'AA0012G01840',
'e_value' => '6e-44',
'bit_score' => '173',
'alignment_length' => '417',
'identity_percentage' => '30.22',
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'emh272030' => array(
'gene_id' => 'emh272030',
'e_value' => '3e-43',
'bit_score' => '169',
'alignment_length' => '458',
'identity_percentage' => '28.17',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'emh350640' => array(
'gene_id' => 'emh350640',
'e_value' => '9e-43',
'bit_score' => '168',
'alignment_length' => '421',
'identity_percentage' => '30.40',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'ORCC809_16G02230' => array(
'gene_id' => 'ORCC809_16G02230',
'e_value' => '2e-41',
'bit_score' => '155',
'alignment_length' => '233',
'identity_percentage' => '40.77',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P013068'
)
),
'DDB_G0282759' => array(
'gene_id' => 'DDB_G0282759',
'e_value' => '2e-40',
'bit_score' => '159',
'alignment_length' => '162',
'identity_percentage' => '47.53',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P038493'
)
),
'SPAC144.17c' => array(
'gene_id' => 'SPAC144.17c',
'e_value' => '2e-39',
'bit_score' => '155',
'alignment_length' => '408',
'identity_percentage' => '29.66',
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P150829'
)
),
'emh497190' => array(
'gene_id' => 'emh497190',
'e_value' => '1e-38',
'bit_score' => '153',
'alignment_length' => '246',
'identity_percentage' => '35.37',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'emh741640' => array(
'gene_id' => 'emh741640',
'e_value' => '7e-38',
'bit_score' => '149',
'alignment_length' => '136',
'identity_percentage' => '52.21',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P038493'
)
),
'ORCC809_01G06520' => array(
'gene_id' => 'ORCC809_01G06520',
'e_value' => '7e-38',
'bit_score' => '147',
'alignment_length' => '252',
'identity_percentage' => '38.10',
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P000375'
)
),
'PTI_01G10910' => array(
'gene_id' => 'PTI_01G10910',
'e_value' => '1e-35',
'bit_score' => '147',
'alignment_length' => '289',
'identity_percentage' => '32.18',
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P011872'
)
),
'emh39080' => array(
'gene_id' => 'emh39080',
'e_value' => '1e-31',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P031043'
)
),
'emh701440' => array(
'gene_id' => 'emh701440',
'e_value' => '4e-30',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P031043'
)
),
'emh150560' => array(
'gene_id' => 'emh150560',
'e_value' => '4e-30',
'bit_score' => '130',
'alignment_length' => '123',
'identity_percentage' => '50.41',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P031043'
)
),
'emh242330' => array(
'gene_id' => 'emh242330',
'e_value' => '3e-29',
'bit_score' => '125',
'alignment_length' => '414',
'identity_percentage' => '26.57',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P046820'
)
),
'emh710970' => array(
'gene_id' => 'emh710970',
'e_value' => '5e-29',
'bit_score' => '124',
'alignment_length' => '414',
'identity_percentage' => '26.57',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P046820'
)
),
'emh545310' => array(
'gene_id' => 'emh545310',
'e_value' => '7e-25',
'bit_score' => '113',
'alignment_length' => '266',
'identity_percentage' => '27.82',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P046834'
)
),
'emh744380' => array(
'gene_id' => 'emh744380',
'e_value' => '2e-21',
'bit_score' => '103',
'alignment_length' => '290',
'identity_percentage' => '25.52',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P046834'
)
),
'CNC64A_783G00010' => array(
'gene_id' => 'CNC64A_783G00010',
'e_value' => '2e-21',
'bit_score' => '94.7',
'alignment_length' => '83',
'identity_percentage' => '53.01',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
),
'emh479120' => array(
'gene_id' => 'emh479120',
'e_value' => '1e-20',
'bit_score' => '96.7',
'alignment_length' => '219',
'identity_percentage' => '28.77',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P032231'
)
),
'ES0048G00310' => array(
'gene_id' => 'ES0048G00310',
'e_value' => '2e-17',
'bit_score' => '84.3',
'alignment_length' => '81',
'identity_percentage' => '44.44',
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P204094'
)
),
'emh614720' => array(
'gene_id' => 'emh614720',
'e_value' => '3e-16',
'bit_score' => '84.0',
'alignment_length' => '222',
'identity_percentage' => '28.83',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P032231'
)
),
'Naga_100969g3' => array(
'gene_id' => 'Naga_100969g3',
'e_value' => '6e-15',
'bit_score' => '77.0',
'alignment_length' => '76',
'identity_percentage' => '40.79',
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P171772'
)
),
'emh478560' => array(
'gene_id' => 'emh478560',
'e_value' => '2e-08',
'bit_score' => '58.5',
'alignment_length' => '110',
'identity_percentage' => '31.82',
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P032231'
)
),
'AT3G50520' => array(
'gene_id' => 'AT3G50520',
'e_value' => '4e-07',
'bit_score' => '55.5',
'alignment_length' => '187',
'identity_percentage' => '26.74',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P003673',
'ORTHOFAM' => 'ORTHO03P003207'
)
),
'AC00G13260' => array(
'gene_id' => 'AC00G13260',
'e_value' => '7e-07',
'bit_score' => '55.1',
'alignment_length' => '167',
'identity_percentage' => '29.34',
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'gf' => array(
'HOMFAM' => 'HOM03P003673',
'ORTHOFAM' => 'ORTHO03P003207'
)
),
'PP00205G00220' => array(
'gene_id' => 'PP00205G00220',
'e_value' => '1e-06',
'bit_score' => '55.5',
'alignment_length' => '206',
'identity_percentage' => '28.16',
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'gf' => array(
'HOMFAM' => 'HOM03P003432',
'ORTHOFAM' => 'ORTHO03P021008'
)
),
'AT5G04120' => array(
'gene_id' => 'AT5G04120',
'e_value' => '2e-06',
'bit_score' => '53.9',
'alignment_length' => '161',
'identity_percentage' => '30.43',
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'gf' => array(
'HOMFAM' => 'HOM03P003673',
'ORTHOFAM' => 'ORTHO03P003207'
)
),
'DDB_G0280831' => array(
'gene_id' => 'DDB_G0280831',
'e_value' => '2e-06',
'bit_score' => '55.5',
'alignment_length' => '176',
'identity_percentage' => '27.84',
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'gf' => array(
'HOMFAM' => 'HOM03P019780',
'ORTHOFAM' => 'ORTHO03P027333'
)
),
'pte489130' => array(
'gene_id' => 'pte489130',
'e_value' => '2e-06',
'bit_score' => '51.2',
'alignment_length' => '48',
'identity_percentage' => '41.67',
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P175001'
)
),
'OS08G37140' => array(
'gene_id' => 'OS08G37140',
'e_value' => '5e-06',
'bit_score' => '53.1',
'alignment_length' => '185',
'identity_percentage' => '29.19',
'species' => 'osa',
'common_name' => 'Oryza sativa',
'gf' => array(
'HOMFAM' => 'HOM03P003673',
'ORTHOFAM' => 'ORTHO03P003207'
)
)
)
$similarity_hits_species = array(
'ath' => array(
(int) 0 => 'AT1G07110',
(int) 1 => 'AT3G30200',
(int) 2 => 'AT3G50520',
(int) 3 => 'AT5G04120'
),
'atr' => array(
(int) 0 => 'ATR_00007G01380'
),
'osa' => array(
(int) 0 => 'OS05G07130',
(int) 1 => 'OS03G18310',
(int) 2 => 'OS08G37140'
),
'ppa' => array(
(int) 0 => 'PP00242G00370',
(int) 1 => 'PP00215G00480',
(int) 2 => 'PP00235G00510',
(int) 3 => 'PP00414G00150',
(int) 4 => 'PP00205G00220'
),
'prcc4223' => array(
(int) 0 => 'RCC4223.06g00990'
),
'cvu' => array(
(int) 0 => 'CV00G87950'
),
'pse3' => array(
(int) 0 => 'PI00G64210'
),
'cre' => array(
(int) 0 => 'CR16G12950',
(int) 1 => 'CR16G02280'
),
'ccr' => array(
(int) 0 => 'ccr56200'
),
'vca' => array(
(int) 0 => 'VC00G96280',
(int) 1 => 'VC00G133590'
),
'pte' => array(
(int) 0 => 'pte157060',
(int) 1 => 'pte98110',
(int) 2 => 'pte383600',
(int) 3 => 'pte648520',
(int) 4 => 'pte489150',
(int) 5 => 'pte134780',
(int) 6 => 'pte519000',
(int) 7 => 'pte489130'
),
'nga' => array(
(int) 0 => 'Naga_100004g69',
(int) 1 => 'Naga_100015g63',
(int) 2 => 'Naga_100030g26',
(int) 3 => 'Naga_100969g3'
),
'esi' => array(
(int) 0 => 'ES0099G00380',
(int) 1 => 'ES0048G00640',
(int) 2 => 'ES0176G00050',
(int) 3 => 'ES0133G00230',
(int) 4 => 'ES0151G00100',
(int) 5 => 'ES0048G00310'
),
'cme' => array(
(int) 0 => 'CM14G00850'
),
'gsu' => array(
(int) 0 => 'gsu43500',
(int) 1 => 'gsu21500'
),
'apr' => array(
(int) 0 => 'AP00G63940'
),
'hom' => array(
(int) 0 => 'ENSG00000158571',
(int) 1 => 'ENSG00000170525',
(int) 2 => 'ENSG00000114268'
),
'tps' => array(
(int) 0 => 'TP02G06550',
(int) 1 => 'TP18G02360'
),
'mus' => array(
(int) 0 => 'ENSMUSG00000026773',
(int) 1 => 'ENSMUSG00000101904'
),
'cel' => array(
(int) 0 => 'WBGene00019295',
(int) 1 => 'WBGene00022456'
),
'drm' => array(
(int) 0 => 'FBgn0027621'
),
'phs' => array(
(int) 0 => 'phs288590',
(int) 1 => 'phs224790',
(int) 2 => 'phs98670'
),
'ptri' => array(
(int) 0 => 'PTI_01G04850',
(int) 1 => 'PTI_01G10910'
),
'sac' => array(
(int) 0 => 'YJL155C',
(int) 1 => 'YIL107C'
),
'ddi' => array(
(int) 0 => 'DDB_G0276253',
(int) 1 => 'DDB_G0282759',
(int) 2 => 'DDB_G0280831'
),
'olu' => array(
(int) 0 => 'OL01G00070',
(int) 1 => 'OL16G00450'
),
'ome' => array(
(int) 0 => 'OM_01G07100',
(int) 1 => 'OM_17G00490'
),
'acg' => array(
(int) 0 => 'AC00G66780',
(int) 1 => 'AC00G13260'
),
'mpu' => array(
(int) 0 => 'MP02G02130',
(int) 1 => 'MP16G00560'
),
'ota' => array(
(int) 0 => 'OT_01G00020'
),
'mrcc299' => array(
(int) 0 => 'MRCC299_01G07810',
(int) 1 => 'MRCC299_10G05010'
),
'aan' => array(
(int) 0 => 'AA0005G00020',
(int) 1 => 'AA0003G01460',
(int) 2 => 'AA0003G04020',
(int) 3 => 'AA0012G01840'
),
'fcy' => array(
(int) 0 => 'FC022G00800',
(int) 1 => 'FC001G09940'
),
'scp' => array(
(int) 0 => 'SPAC732.02c',
(int) 1 => 'SPAC222.13c',
(int) 2 => 'SPAPB17E12.14c',
(int) 3 => 'SPAC144.17c'
),
'emh' => array(
(int) 0 => 'emh168130',
(int) 1 => 'emh398660',
(int) 2 => 'emh576590',
(int) 3 => 'emh227060',
(int) 4 => 'emh592730',
(int) 5 => 'emh272030',
(int) 6 => 'emh350640',
(int) 7 => 'emh497190',
(int) 8 => 'emh741640',
(int) 9 => 'emh39080',
(int) 10 => 'emh701440',
(int) 11 => 'emh150560',
(int) 12 => 'emh242330',
(int) 13 => 'emh710970',
(int) 14 => 'emh545310',
(int) 15 => 'emh744380',
(int) 16 => 'emh479120',
(int) 17 => 'emh614720',
(int) 18 => 'emh478560'
),
'cnc64a' => array(
(int) 0 => 'CNC64A_011G01130'
),
'orcc809' => array(
(int) 0 => 'ORCC809_16G02230',
(int) 1 => 'ORCC809_01G06520'
)
)
$gene_id = 'AT1G07110'
$all_species_index = array(
(int) 0 => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
(int) 1 => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
(int) 2 => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
(int) 3 => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
(int) 4 => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
(int) 5 => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
(int) 6 => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
(int) 7 => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
(int) 8 => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
(int) 9 => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
(int) 10 => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
(int) 11 => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
(int) 12 => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
(int) 13 => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
(int) 14 => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
(int) 15 => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
(int) 16 => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
(int) 17 => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
(int) 18 => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
(int) 19 => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
(int) 20 => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
(int) 21 => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
(int) 22 => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
(int) 23 => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
(int) 24 => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
(int) 25 => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
(int) 26 => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
(int) 27 => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
(int) 28 => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
(int) 29 => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
(int) 30 => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
(int) 31 => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
(int) 32 => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
(int) 33 => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
(int) 34 => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
(int) 35 => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
(int) 36 => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
(int) 37 => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
(int) 38 => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$all_species = array(
'atr' => array(
'species' => 'atr',
'common_name' => 'Amborella trichopoda',
'tax_id' => '13333'
),
'ath' => array(
'species' => 'ath',
'common_name' => 'Arabidopsis thaliana',
'tax_id' => '3702'
),
'acg' => array(
'species' => 'acg',
'common_name' => 'Asterochloris sp. Cgr-DA1pho v2.0',
'tax_id' => '763042'
),
'aan' => array(
'species' => 'aan',
'common_name' => 'Aureococcus anophagefferens',
'tax_id' => '44056'
),
'apr' => array(
'species' => 'apr',
'common_name' => 'Auxenochlorella protothecoides',
'tax_id' => '3075'
),
'bprrcc1105' => array(
'species' => 'bprrcc1105',
'common_name' => 'Bathycoccus prasinos',
'tax_id' => '41875'
),
'cel' => array(
'species' => 'cel',
'common_name' => 'Caenorhabditis elegans',
'tax_id' => '6239'
),
'cre' => array(
'species' => 'cre',
'common_name' => 'Chlamydomonas reinhardtii',
'tax_id' => '3055'
),
'cnc64a' => array(
'species' => 'cnc64a',
'common_name' => 'Chlorella sp NC64A',
'tax_id' => '310507'
),
'ccr' => array(
'species' => 'ccr',
'common_name' => 'Chondrus crispus',
'tax_id' => '2769'
),
'cvu' => array(
'species' => 'cvu',
'common_name' => 'Coccomyxa subellipsoidea C-169',
'tax_id' => '574566'
),
'cme' => array(
'species' => 'cme',
'common_name' => 'Cyanidioschyzon merolae',
'tax_id' => '45157'
),
'ddi' => array(
'species' => 'ddi',
'common_name' => 'Dictyostelium discoideum',
'tax_id' => '44689'
),
'drm' => array(
'species' => 'drm',
'common_name' => 'Drosophila melanogaster',
'tax_id' => '7227'
),
'esi' => array(
'species' => 'esi',
'common_name' => 'Ectocarpus siliculosus',
'tax_id' => '2880'
),
'emh' => array(
'species' => 'emh',
'common_name' => 'Emiliania huxleyi',
'tax_id' => '280463'
),
'fcy' => array(
'species' => 'fcy',
'common_name' => 'Fragilariopsis cylindrus',
'tax_id' => '186039'
),
'gsu' => array(
'species' => 'gsu',
'common_name' => 'Galdieria sulphuraria',
'tax_id' => '130081'
),
'hsp' => array(
'species' => 'hsp',
'common_name' => 'Helicosporidium sp. ',
'tax_id' => '145475'
),
'hom' => array(
'species' => 'hom',
'common_name' => 'Homo sapiens',
'tax_id' => '9606'
),
'mpu' => array(
'species' => 'mpu',
'common_name' => 'Micromonas pusilla strain CCMP1545',
'tax_id' => '564608'
),
'mrcc299' => array(
'species' => 'mrcc299',
'common_name' => 'Micromonas sp RCC299',
'tax_id' => '296587'
),
'mus' => array(
'species' => 'mus',
'common_name' => 'Mus musculus',
'tax_id' => '10090'
),
'nga' => array(
'species' => 'nga',
'common_name' => 'Nannochloropsis gaditana',
'tax_id' => '72520'
),
'osa' => array(
'species' => 'osa',
'common_name' => 'Oryza sativa',
'tax_id' => '4530'
),
'olu' => array(
'species' => 'olu',
'common_name' => 'Ostreococcus lucimarinus',
'tax_id' => '242159'
),
'ome' => array(
'species' => 'ome',
'common_name' => 'Ostreococcus mediterraneus',
'tax_id' => '1486918'
),
'orcc809' => array(
'species' => 'orcc809',
'common_name' => 'Ostreococcus sp RCC809',
'tax_id' => '385169'
),
'ota' => array(
'species' => 'ota',
'common_name' => 'Ostreococcus tauri',
'tax_id' => '70448'
),
'pte' => array(
'species' => 'pte',
'common_name' => 'Paramecium tetraurelia',
'tax_id' => '5888'
),
'ptri' => array(
'species' => 'ptri',
'common_name' => 'Phaeodactylum tricornutum',
'tax_id' => '2850'
),
'ppa' => array(
'species' => 'ppa',
'common_name' => 'Physcomitrella patens',
'tax_id' => '3218'
),
'phs' => array(
'species' => 'phs',
'common_name' => 'Phytophtora sojae',
'tax_id' => '67593'
),
'pse3' => array(
'species' => 'pse3',
'common_name' => 'Picochlorum sp. SENEW3 (SE3)',
'tax_id' => '1470871'
),
'prcc4223' => array(
'species' => 'prcc4223',
'common_name' => 'Picochlorum_RCC4223',
'tax_id' => '249344'
),
'sac' => array(
'species' => 'sac',
'common_name' => 'Saccharomyces cerevisiae strain S288C',
'tax_id' => '4932'
),
'scp' => array(
'species' => 'scp',
'common_name' => 'Schizosaccharomyces pombe',
'tax_id' => '4896'
),
'tps' => array(
'species' => 'tps',
'common_name' => 'Thalassiosira pseudonana',
'tax_id' => '35128'
),
'vca' => array(
'species' => 'vca',
'common_name' => 'Volvox carteri',
'tax_id' => '3067'
)
)
$gene_family_types_information = array(
'HOMFAM' => array(
'id' => 'HOMFAM',
'name' => 'Homologous gene family',
'prefix' => 'HOM',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'homology',
'parent_id' => ''
),
'ORTHOFAM' => array(
'id' => 'ORTHOFAM',
'name' => 'Orthologous gene family',
'prefix' => 'ORTH',
'gene_type' => 'coding',
'method' => '{}',
'ancestry' => 'orthology',
'parent_id' => 'HOMFAM'
)
)
$gene_family_types_configuration = array()
$data_identifier = 'AT1G07110'
$data_type = 'gene_id'
$allow_async_use = true
$gene_placeholder = 'CM07G01050'
$gf_placeholder = 'HOM03P000450'
$title_for_layout = 'Pico-PLAZA 3.0 : Interactive Phylogenetics Module'
$collapse1 = ''
$collapse2 = 'collapse in'
$similarity_hit = array(
'gene_id' => 'CNC64A_783G00010',
'e_value' => '2e-21',
'bit_score' => '94.7',
'alignment_length' => '83',
'identity_percentage' => '53.01',
'gf' => array(
'HOMFAM' => 'HOM03P000453',
'ORTHOFAM' => 'ORTHO03P007490'
)
)
$checked = null
$similarity_hit_gene = 'CNC64A_783G00010'
include - APP/View/Analysis/custom_tree_creation.ctp, line 169
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 146
|
2e-21 |
94.7 |
83 |
53.01 |