Gene: tho365980 (Thalassiosira oceanica)

Overview top

Gene Identifier
tho365980
Transcript Identifier
tho365980.1
Gene Type
Coding gene
Location
To_g19164 : 671-3102 : positive

Family Information

Homologous gene family
HOM02SEM000010
(859 genes in 26 species)
specific family
Orthologous gene family
ORTHO02SEM000020
(548 genes in 26 species)
specific family

Descriptions

gene_descr
hypothetical protein
eggnog_description
dna repair and recombination protein

Identifiers

Type Value
pidEJK62266
UniprotK0SMW0
old_giTHAOC_17127

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071704
IEA
PLAZA Integrative Orthologyorganic substance metabolic process SPAC22F3.03c
GO:0051716
IEA
PLAZA Integrative Orthologycellular response to stimulus SPAC22F3.03c
GO:0008406
IEA
PLAZA Integrative Orthologygonad development WBGene00006961
GO:0007127
IEA
EggNOGmappermeiosis I
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress SPAC22F3.03c
GO:0009987
IEA
PLAZA Integrative Orthologycellular process SPAC22F3.03c
GO:0007049
IEA
PLAZA Integrative Orthologycell cycle SPAC22F3.03c
GO:0000003
IEA
PLAZA Integrative Orthologyreproduction SPAC22F3.03c
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization SPAC22F3.03c
GO:0022414
IEA
PLAZA Integrative Orthologyreproductive process SPAC22F3.03c
GO:0000724
IEA
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination SPAC22F3.03c
GO:0006310
IEA
PLAZA Integrative OrthologyDNA recombination SPAC22F3.03c
GO:0000725
IEA
PLAZA Integrative Orthologyrecombinational repair SPAC22F3.03c
GO:0040025
IEA
PLAZA Integrative Orthologyvulval development WBGene00006961
GO:0061982
IEA
PLAZA Integrative Orthologymeiosis I cell cycle process SPAC22F3.03c
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process WBGene00006961
GO:0140013
IEA
PLAZA Integrative Orthologymeiotic nuclear division SPAC22F3.03c
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus SPAC22F3.03c
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process WBGene00006961
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process SPAC22F3.03c
GO:0033554
IEA
PLAZA Integrative Orthologycellular response to stress SPAC22F3.03c
GO:0000280
IEA
PLAZA Integrative Orthologynuclear division SPAC22F3.03c
GO:0044260
IEA
PLAZA Integrative Orthologycellular macromolecule metabolic process SPAC22F3.03c
GO:0007548
IEA
PLAZA Integrative Orthologysex differentiation WBGene00006961
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process SPAC22F3.03c
GO:0043170
IEA
PLAZA Integrative Orthologymacromolecule metabolic process SPAC22F3.03c
GO:0006302
IEA
PLAZA Integrative Orthologydouble-strand break repair SPAC22F3.03c
GO:0060429
IEA
PLAZA Integrative Orthologyepithelium development WBGene00006961
GO:0009653
IEA
PLAZA Integrative Orthologyanatomical structure morphogenesis WBGene00006961
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development WBGene00006961
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development WBGene00006961
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process SPAC22F3.03c
GO:0035825
IEA
EggNOGmapperhomologous recombination
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis SPAC22F3.03c
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization SPAC22F3.03c
GO:0002009
IEA
PLAZA Integrative Orthologymorphogenesis of an epithelium WBGene00006961
GO:0006807
IEA
PLAZA Integrative Orthologynitrogen compound metabolic process SPAC22F3.03c
GO:0048731
IEA
PLAZA Integrative Orthologysystem development WBGene00006961
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process SPAC22F3.03c
GO:0009888
IEA
PLAZA Integrative Orthologytissue development WBGene00006961
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process SPAC22F3.03c
GO:0006974
IEA
PLAZA Integrative Orthologycellular response to DNA damage stimulus SPAC22F3.03c
GO:0006259
IEA
PLAZA Integrative OrthologyDNA metabolic process SPAC22F3.03c
GO:0048569
IEA
PLAZA Integrative Orthologypost-embryonic animal organ development WBGene00006961
GO:0045137
IEA
PLAZA Integrative Orthologydevelopment of primary sexual characteristics WBGene00006961
GO:0008152
IEA
PLAZA Integrative Orthologymetabolic process SPAC22F3.03c
GO:0048729
IEA
PLAZA Integrative Orthologytissue morphogenesis WBGene00006961
GO:0048806
IEA
PLAZA Integrative Orthologygenitalia development WBGene00006961
GO:0048608
IEA
PLAZA Integrative Orthologyreproductive structure development WBGene00006961
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process SPAC22F3.03c
GO:0002119
IEA
PLAZA Integrative Orthologynematode larval development WBGene00006961
GO:0051321
IEA
PLAZA Integrative Orthologymeiotic cell cycle SPAC22F3.03c
GO:0048285
IEA
PLAZA Integrative Orthologyorganelle fission SPAC22F3.03c
GO:0003006
IEA
PLAZA Integrative Orthologydevelopmental process involved in reproduction WBGene00006961
GO:0061458
IEA
PLAZA Integrative Orthologyreproductive system development WBGene00006961
GO:0044237
IEA
PLAZA Integrative Orthologycellular metabolic process SPAC22F3.03c
GO:0044238
IEA
PLAZA Integrative Orthologyprimary metabolic process SPAC22F3.03c
GO:0002164
IEA
PLAZA Integrative Orthologylarval development WBGene00006961
GO:0048513
IEA
PLAZA Integrative Orthologyanimal organ development WBGene00006961
GO:0022402
IEA
PLAZA Integrative Orthologycell cycle process SPAC22F3.03c
GO:0009791
IEA
PLAZA Integrative Orthologypost-embryonic development WBGene00006961
GO:1903046
IEA
PLAZA Integrative Orthologymeiotic cell cycle process SPAC22F3.03c
GO:0009792
IEA
PLAZA Integrative Orthologyembryo development ending in birth or egg hatching WBGene00006961
GO:0007131
IEA
EggNOGmapperreciprocal meiotic recombination
GO:0040035
IEA
PLAZA Integrative Orthologyhermaphrodite genitalia development WBGene00006961
GO:0006281
IEA
PLAZA Integrative OrthologyDNA repair SPAC22F3.03c
GO:0009790
IEA
PLAZA Integrative Orthologyembryo development WBGene00006961
GO:0006338
IEA
EggNOGmapperchromatin remodeling
GO:0035822
IEA
EggNOGmappergene conversion
GO:0000722
IEA
EggNOGmappertelomere maintenance via recombination
GO:0009150
IEA
EggNOGmapperpurine ribonucleotide metabolic process
GO:0000711
IEA
EggNOGmappermeiotic DNA repair synthesis
GO:0032989
IEA
EggNOGmappercellular component morphogenesis
GO:0046034
IEA
EggNOGmapperATP metabolic process
GO:0000733
IEA
EggNOGmapperDNA strand renaturation
GO:0010608
IEA
EggNOGmapperposttranscriptional regulation of gene expression
GO:0008298
IEA
EggNOGmapperintracellular mRNA localization
GO:0009169
IEA
EggNOGmapperpurine ribonucleoside monophosphate catabolic process
GO:2000112
IEA
EggNOGmapperregulation of cellular macromolecule biosynthetic process
GO:0006417
IEA
EggNOGmapperregulation of translation
GO:0009207
IEA
EggNOGmapperpurine ribonucleoside triphosphate catabolic process
GO:0006195
IEA
EggNOGmapperpurine nucleotide catabolic process
GO:0009154
IEA
EggNOGmapperpurine ribonucleotide catabolic process
GO:0010927
IEA
EggNOGmappercellular component assembly involved in morphogenesis
GO:0030261
IEA
EggNOGmapperchromosome condensation
GO:0043150
IEA
EggNOGmapperDNA synthesis involved in double-strand break repair via homologous recombination
GO:0006311
IEA
EggNOGmappermeiotic gene conversion
GO:0007304
IEA
EggNOGmapperchorion-containing eggshell formation
GO:0030491
IEA
EggNOGmapperheteroduplex formation
GO:0046130
IEA
EggNOGmapperpurine ribonucleoside catabolic process
GO:0007306
IEA
EggNOGmappereggshell chorion assembly
GO:0010332
IEA
EggNOGmapperresponse to gamma radiation
GO:0042493
IEA
EggNOGmapperresponse to drug
GO:0032079
IEA
EggNOGmapperpositive regulation of endodeoxyribonuclease activity
GO:0046843
IEA
EggNOGmapperdorsal appendage formation
GO:0045003
IEA
EggNOGmapperdouble-strand break repair via synthesis-dependent strand annealing
GO:0032508
IEA
EggNOGmapperDNA duplex unwinding

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0003677
IEA
EggNOGmapperDNA binding
GO:0003676
IEA
PLAZA Integrative Orthologynucleic acid binding SPAC22F3.03c
GO:0036310
IEA
EggNOGmapperannealing helicase activity
GO:0015616
IEA
EggNOGmapperDNA translocase activity
GO:0008026
IEA
EggNOGmapperATP-dependent helicase activity
GO:0004003
IEA
EggNOGmapperATP-dependent DNA helicase activity
GO:0033170
IEA
EggNOGmapperprotein-DNA loading ATPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
EggNOGmappercytoplasm
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPAC22F3.03c
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPAC22F3.03c
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPAC22F3.03c
GO:0005634
IEA
EggNOGmappernucleus
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPAC22F3.03c
GO:0005829
IEA
PLAZA Integrative Orthologycytosol SPAC22F3.03c
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPAC22F3.03c
GO:0005623
IEA
PLAZA Integrative Orthologycell SPAC22F3.03c
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPAC22F3.03c
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPAC22F3.03c
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPAC22F3.03c
GO:0005819
IEA
EggNOGmapperspindle
GO:0015630
IEA
EggNOGmappermicrotubule cytoskeleton
GO:0032991
IEA
EggNOGmapperprotein-containing complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR000330SNF2-related, N-terminal domain
IPR014001Helicase superfamily 1/2, ATP-binding domain

No MapMan annotations defined for this gene.
KeggID Description
K10875RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:3.6.4.-]
K10877RAD54B; DNA repair and recombination protein RAD54B [EC:3.6.4.-]
No chloroplast target sequence found.