Gene: sya00G42920 (Synedra acus)

Overview top

Gene Identifier
sya00G42920
Transcript Identifier
962
Gene Type
Coding gene
Location
scaffold00040 : 324775-327976 : positive

Family Information

Homologous gene family
HOM02SEM006935
(12 genes in 11 species)
specific family
Orthologous gene family
ORTHO02SEM006964
(12 genes in 11 species)
specific family

Descriptions

eggnog_description
repair protein

Identifiers

Type Value
GeneName962-gene

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071704
IEA
PLAZA Homology (enrichment)organic substance metabolic process HOM02SEM006935
GO:0051716
IEA
PLAZA Homology (enrichment)cellular response to stimulus HOM02SEM006935
GO:0006807
IEA
PLAZA Homology (enrichment)nitrogen compound metabolic process HOM02SEM006935
GO:0006725
IEA
PLAZA Homology (enrichment)cellular aromatic compound metabolic process HOM02SEM006935
GO:0006950
IEA
PLAZA Homology (enrichment)response to stress HOM02SEM006935
GO:0009987
IEA
PLAZA Homology (enrichment)cellular process HOM02SEM006935
GO:0006139
IEA
PLAZA Homology (enrichment)nucleobase-containing compound metabolic process HOM02SEM006935
GO:0006259
IEA
PLAZA Homology (enrichment)DNA metabolic process HOM02SEM006935
GO:0006974
IEA
PLAZA Homology (enrichment)cellular response to DNA damage stimulus HOM02SEM006935
GO:0008152
IEA
PLAZA Homology (enrichment)metabolic process HOM02SEM006935
GO:0090304
IEA
PLAZA Homology (enrichment)nucleic acid metabolic process HOM02SEM006935
GO:0050896
IEA
PLAZA Homology (enrichment)response to stimulus HOM02SEM006935
GO:0034641
IEA
PLAZA Homology (enrichment)cellular nitrogen compound metabolic process HOM02SEM006935
GO:0033554
IEA
PLAZA Homology (enrichment)cellular response to stress HOM02SEM006935
GO:0044260
IEA
PLAZA Homology (enrichment)cellular macromolecule metabolic process HOM02SEM006935
GO:0046483
IEA
PLAZA Homology (enrichment)heterocycle metabolic process HOM02SEM006935
GO:0043170
IEA
PLAZA Homology (enrichment)macromolecule metabolic process HOM02SEM006935
GO:0044237
IEA
PLAZA Homology (enrichment)cellular metabolic process HOM02SEM006935
GO:0044238
IEA
PLAZA Homology (enrichment)primary metabolic process HOM02SEM006935
GO:0006289
IEA
InterPronucleotide-excision repair
GO:1901360
IEA
PLAZA Homology (enrichment)organic cyclic compound metabolic process HOM02SEM006935
GO:0006281
IEA
PLAZA Homology (enrichment)DNA repair HOM02SEM006935
GO:0031124
IEA
InterPromRNA 3'-end processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0097159
IEA
PLAZA Homology (enrichment)organic cyclic compound binding HOM02SEM006935
GO:0003677
IEA
PLAZA Homology (enrichment)DNA binding HOM02SEM006935
GO:0003676
IEA
PLAZA Homology (enrichment)nucleic acid binding HOM02SEM006935
GO:0003684
IEA
InterProdamaged DNA binding
GO:0005488
IEA
PLAZA Homology (enrichment)binding HOM02SEM006935
GO:1901363
IEA
PLAZA Homology (enrichment)heterocyclic compound binding HOM02SEM006935

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0005622
IEA
PLAZA Homology (enrichment)intracellular HOM02SEM006935
GO:0044424
IEA
PLAZA Homology (enrichment)intracellular part HOM02SEM006935
GO:0044464
IEA
PLAZA Homology (enrichment)cell part HOM02SEM006935
GO:0043231
IEA
PLAZA Homology (enrichment)intracellular membrane-bounded organelle HOM02SEM006935
GO:0005623
IEA
PLAZA Homology (enrichment)cell HOM02SEM006935
GO:0043227
IEA
PLAZA Homology (enrichment)membrane-bounded organelle HOM02SEM006935
GO:0043226
IEA
PLAZA Homology (enrichment)organelle HOM02SEM006935
GO:0043229
IEA
PLAZA Homology (enrichment)intracellular organelle HOM02SEM006935

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR037129XPA domain superfamily
IPR038192CSTF2, C-terminal domain superfamily
IPR000465XPA
IPR026896Transcription termination and cleavage factor, C-terminal domain
IPR022656XPA, C-terminal
IPR009061Putative DNA-binding domain superfamily

No MapMan annotations defined for this gene.
KeggID Description
K10847XPA; DNA-repair protein complementing XP-A cells
No chloroplast target sequence found.