Gene: sya00G243310 (Synedra acus)

Overview top

Gene Identifier
sya00G243310
Transcript Identifier
676
Gene Type
Coding gene
Location
scaffold01400 : 7599-8417 : positive

Family Information

Homologous gene family
HOM02SEM003006
(25 genes in 24 species)
specific family
Orthologous gene family
ORTHO02SEM003139
(25 genes in 24 species)
specific family
Duplication type
Block duplicate

Descriptions

eggnog_description
RNA binding motif protein 42

Identifiers

Type Value
GeneName676-gene

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071704
IEA
PLAZA Integrative Orthologyorganic substance metabolic process FBgn0037342
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation FBgn0037342
GO:0000375
IEA
PLAZA Integrative OrthologyRNA splicing, via transesterification reactions FBgn0037342
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process FBgn0037342
GO:0009987
IEA
PLAZA Integrative Orthologycellular process FBgn0037342
GO:0006397
IEA
PLAZA Integrative OrthologymRNA processing FBgn0037342
GO:0006396
IEA
PLAZA Integrative OrthologyRNA processing FBgn0037342
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process FBgn0037342
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process FBgn0037342
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process FBgn0037342
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process FBgn0037342
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process FBgn0037342
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process FBgn0037342
GO:0043170
IEA
PLAZA Integrative Orthologymacromolecule metabolic process FBgn0037342
GO:0000398
IEA
EggNOGmappermRNA splicing, via spliceosome
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development FBgn0037342
GO:0007399
IEA
EggNOGmappernervous system development
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development FBgn0037342
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process FBgn0037342
GO:0010467
IEA
PLAZA Integrative Orthologygene expression FBgn0037342
GO:0006807
IEA
PLAZA Integrative Orthologynitrogen compound metabolic process FBgn0037342
GO:0048731
IEA
PLAZA Integrative Orthologysystem development FBgn0037342
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process FBgn0037342
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process FBgn0037342
GO:0008152
IEA
PLAZA Integrative Orthologymetabolic process FBgn0037342
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process FBgn0037342
GO:0000377
IEA
EggNOGmapperRNA splicing, via transesterification reactions with bulged adenosine as nucleophile
GO:0044237
IEA
PLAZA Integrative Orthologycellular metabolic process FBgn0037342
GO:0044238
IEA
PLAZA Integrative Orthologyprimary metabolic process FBgn0037342
GO:0022008
IEA
EggNOGmapperneurogenesis
GO:0008380
IEA
PLAZA Integrative OrthologyRNA splicing FBgn0037342
GO:0051321
IEA
EggNOGmappermeiotic cell cycle
GO:0044260
IEA
EggNOGmappercellular macromolecule metabolic process
GO:0022402
IEA
EggNOGmappercell cycle process
GO:0002088
IEA
EggNOGmapperlens development in camera-type eye
GO:0043010
IEA
EggNOGmappercamera-type eye development

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0097159
IEA
PLAZA Integrative Orthologyorganic cyclic compound binding ENSG00000126254
GO:0003676
IEA
InterPronucleic acid binding
GO:1901363
IEA
PLAZA Integrative Orthologyheterocyclic compound binding ENSG00000126254
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000126254
GO:0005488
IEA
PLAZA Integrative Orthologybinding ENSG00000126254
GO:0003723
IEA
PLAZA Integrative OrthologyRNA binding ENSG00000126254
GO:0003729
IEA
EggNOGmappermRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPAC22E12.02
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPAC22E12.02
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part FBgn0037342
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPAC22E12.02
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part FBgn0037342
GO:1990904
IEA
PLAZA Integrative Orthologyribonucleoprotein complex FBgn0037342
GO:1902494
IEA
PLAZA Integrative Orthologycatalytic complex FBgn0037342
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex FBgn0037342
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPAC22E12.02
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part FBgn0037342
GO:0005681
IEA
PLAZA Integrative Orthologyspliceosomal complex FBgn0037342
GO:0071011
IEA
EggNOGmapperprecatalytic spliceosome
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPAC22E12.02
GO:0071013
IEA
EggNOGmappercatalytic step 2 spliceosome
GO:0005623
IEA
PLAZA Integrative Orthologycell SPAC22E12.02
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPAC22E12.02
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPAC22E12.02
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPAC22E12.02
GO:0005737
IEA
EggNOGmappercytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR012677Nucleotide-binding alpha-beta plait domain superfamily
IPR000504RNA recognition motif domain
IPR035979RNA-binding domain superfamily

No MapMan annotations defined for this gene.
No Kegg annotations defined for this gene.
No chloroplast target sequence found.