Gene: ptri110440 (Phaeodactylum tricornutum)

Overview top

Gene Identifier
ptri110440
Transcript Identifier
ptri110440.1
Gene Type
Coding gene
Location
11 : 451623-452333 : negative

Family Information

Homologous gene family
HOM02SEM003006
(25 genes in 24 species)
specific family
Orthologous gene family
ORTHO02SEM003139
(25 genes in 24 species)
specific family

Descriptions

eggnog_description
RNA binding motif protein 42

Identifiers

Type Value
pidPhatr3_J13402.p1
UniprotB5Y3S2
old_giPhatr3_J13402
EMBLCP001141
prev_idPhatr2_13402

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071704
IEA
PLAZA Integrative Orthologyorganic substance metabolic process FBgn0037342
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation FBgn0037342
GO:0000375
IEA
PLAZA Integrative OrthologyRNA splicing, via transesterification reactions FBgn0037342
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process FBgn0037342
GO:0009987
IEA
PLAZA Integrative Orthologycellular process FBgn0037342
GO:0006397
IEA
PLAZA Integrative OrthologymRNA processing FBgn0037342
GO:0006396
IEA
PLAZA Integrative OrthologyRNA processing FBgn0037342
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process FBgn0037342
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process FBgn0037342
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process FBgn0037342
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process FBgn0037342
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process FBgn0037342
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process FBgn0037342
GO:0043170
IEA
PLAZA Integrative Orthologymacromolecule metabolic process FBgn0037342
GO:0000398
IEA
EggNOGmappermRNA splicing, via spliceosome
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development FBgn0037342
GO:0007399
IEA
PLAZA Integrative Orthologynervous system development FBgn0037342
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development FBgn0037342
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process FBgn0037342
GO:0010467
IEA
PLAZA Integrative Orthologygene expression FBgn0037342
GO:0006807
IEA
PLAZA Integrative Orthologynitrogen compound metabolic process FBgn0037342
GO:0048731
IEA
PLAZA Integrative Orthologysystem development FBgn0037342
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process FBgn0037342
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process FBgn0037342
GO:0008152
IEA
PLAZA Integrative Orthologymetabolic process FBgn0037342
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process FBgn0037342
GO:0000377
IEA
EggNOGmapperRNA splicing, via transesterification reactions with bulged adenosine as nucleophile
GO:0044237
IEA
PLAZA Integrative Orthologycellular metabolic process FBgn0037342
GO:0044238
IEA
PLAZA Integrative Orthologyprimary metabolic process FBgn0037342
GO:0022008
IEA
EggNOGmapperneurogenesis
GO:0008380
IEA
PLAZA Integrative OrthologyRNA splicing FBgn0037342
GO:0002088
IEA
EggNOGmapperlens development in camera-type eye
GO:0044260
IEA
EggNOGmappercellular macromolecule metabolic process
GO:0051321
IEA
EggNOGmappermeiotic cell cycle
GO:0043010
IEA
EggNOGmappercamera-type eye development
GO:0022402
IEA
EggNOGmappercell cycle process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
InterPronucleotide binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000126254
GO:0003723
IEA
PLAZA Integrative OrthologyRNA binding ENSG00000126254
GO:0003729
IEA
EggNOGmappermRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPAC22E12.02
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPAC22E12.02
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part FBgn0037342
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPAC22E12.02
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part FBgn0037342
GO:1990904
IEA
PLAZA Integrative Orthologyribonucleoprotein complex FBgn0037342
GO:1902494
IEA
PLAZA Integrative Orthologycatalytic complex FBgn0037342
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex FBgn0037342
GO:0005634
IEA
EggNOGmappernucleus
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part FBgn0037342
GO:0005681
IEA
PLAZA Integrative Orthologyspliceosomal complex FBgn0037342
GO:0071011
IEA
EggNOGmapperprecatalytic spliceosome
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPAC22E12.02
GO:0071013
IEA
EggNOGmappercatalytic step 2 spliceosome
GO:0005623
IEA
PLAZA Integrative Orthologycell SPAC22E12.02
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPAC22E12.02
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPAC22E12.02
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPAC22E12.02
GO:0005737
IEA
EggNOGmappercytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR012677Nucleotide-binding alpha-beta plait domain superfamily
IPR000504RNA recognition motif domain

No MapMan annotations defined for this gene.
No Kegg annotations defined for this gene.
No chloroplast target sequence found.