Gene: gene4559 (Fragilariopsis cylindrus)

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Gene Identifier
gene4559
Transcript Identifier
211404
Gene Type
Coding gene
Location
scaffold_16 : 230261-231708 : positive

Family Information

Homologous gene family
HOM02SEM001990
(32 genes in 26 species)
specific family
Orthologous gene family
ORTHO02SEM002073
(32 genes in 26 species)
specific family
Duplication type
Block duplicate

Descriptions

eggnog_description
tryptophanyltRNA synthetase

Identifiers

Type Value
pid211404
idmRNA4560
GeneNamegene4559

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000003
IEA
PLAZA Integrative Orthologyreproduction AT2G25840
GO:0048827
IEA
PLAZA Integrative Orthologyphyllome development AT2G25840
GO:0022414
IEA
PLAZA Integrative Orthologyreproductive process AT2G25840
GO:0140053
IEA
PLAZA Integrative Orthologymitochondrial gene expression YDR268W
GO:0090567
IEA
PLAZA Integrative Orthologyreproductive shoot system development AT2G25840
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process AT2G25840
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process AT2G25840
GO:0032543
IEA
PLAZA Integrative Orthologymitochondrial translation YDR268W
GO:0099402
IEA
PLAZA Integrative Orthologyplant organ development AT2G25840
GO:0048467
IEA
PLAZA Integrative Orthologygynoecium development AT2G25840
GO:0070183
IEA
EggNOGmappermitochondrial tryptophanyl-tRNA aminoacylation
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development AT2G25840
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development AT2G25840
GO:0000959
IEA
PLAZA Integrative Orthologymitochondrial RNA metabolic process YDR268W
GO:0048731
IEA
PLAZA Integrative Orthologysystem development AT2G25840
GO:0035670
IEA
EggNOGmapperplant-type ovary development
GO:0048608
IEA
PLAZA Integrative Orthologyreproductive structure development AT2G25840
GO:0048481
IEA
EggNOGmapperplant ovule development
GO:0070127
IEA
PLAZA Integrative OrthologytRNA aminoacylation for mitochondrial protein translation YDR268W
GO:0009908
IEA
PLAZA Integrative Orthologyflower development AT2G25840
GO:0048367
IEA
PLAZA Integrative Orthologyshoot system development AT2G25840
GO:0048440
IEA
PLAZA Integrative Orthologycarpel development AT2G25840
GO:0003006
IEA
PLAZA Integrative Orthologydevelopmental process involved in reproduction AT2G25840
GO:0061458
IEA
EggNOGmapperreproductive system development
GO:0048437
IEA
PLAZA Integrative Orthologyfloral organ development AT2G25840
GO:0048438
IEA
PLAZA Integrative Orthologyfloral whorl development AT2G25840
GO:0009791
IEA
PLAZA Integrative Orthologypost-embryonic development AT2G25840
GO:0006436
IEA
InterProtryptophanyl-tRNA aminoacylation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0048514
IEA
EggNOGmapperblood vessel morphogenesis
GO:0040009
IEA
EggNOGmapperregulation of growth rate
GO:0040010
IEA
EggNOGmapperpositive regulation of growth rate
GO:0001570
IEA
EggNOGmappervasculogenesis
GO:0009790
IEA
EggNOGmapperembryo development
GO:0007005
IEA
EggNOGmappermitochondrion organization
GO:0048569
IEA
EggNOGmapperpost-embryonic animal organ development

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
EggNOGmapperATP binding
GO:0005524
IEA
InterProATP binding
GO:0004830
IEA
EggNOGmappertryptophan-tRNA ligase activity
GO:0004830
IEA
InterProtryptophan-tRNA ligase activity
GO:0000166
IEA
InterPronucleotide binding
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0032559
IEA
EggNOGmapperadenyl ribonucleotide binding
GO:0035639
IEA
EggNOGmapperpurine ribonucleoside triphosphate binding
GO:0042803
IEA
EggNOGmapperprotein homodimerization activity
GO:0032550
IEA
EggNOGmapperpurine ribonucleoside binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071944
IEA
PLAZA Integrative Orthologycell periphery ENSG00000116874
GO:0016020
IEA
PLAZA Integrative Orthologymembrane ENSG00000116874
GO:0005739
IEA
EggNOGmappermitochondrion
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen SPAC3G9.13c
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part SPAC3G9.13c
GO:0044429
IEA
PLAZA Integrative Orthologymitochondrial part SPAC3G9.13c
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen SPAC3G9.13c
GO:0009536
IEA
PLAZA Integrative Orthologyplastid AT2G25840
GO:0009532
IEA
PLAZA Integrative Orthologyplastid stroma AT2G25840
GO:0009570
IEA
EggNOGmapperchloroplast stroma
GO:0005759
IEA
EggNOGmappermitochondrial matrix
GO:0005886
IEA
PLAZA Integrative Orthologyplasma membrane ENSG00000116874
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part SPAC3G9.13c
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPAC3G9.13c
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen SPAC3G9.13c
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPAC3G9.13c
GO:0009507
IEA
EggNOGmapperchloroplast
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPAC3G9.13c
GO:0044435
IEA
PLAZA Integrative Orthologyplastid part AT2G25840
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPAC3G9.13c
GO:0044434
IEA
PLAZA Integrative Orthologychloroplast part AT2G25840
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPAC3G9.13c
GO:0005737
IEA
InterProcytoplasm
GO:0020011
IEA
EggNOGmapperapicoplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002306Tryptophan-tRNA ligase
IPR014729Rossmann-like alpha/beta/alpha sandwich fold
IPR024109Tryptophan-tRNA ligase, bacterial-type
IPR002305Aminoacyl-tRNA synthetase, class Ic
IPR001412Aminoacyl-tRNA synthetase, class I, conserved site

No MapMan annotations defined for this gene.
KeggID Description
K02946RP-S10, MRPS10, rpsJ; small subunit ribosomal protein S10
K01867WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
K13346PEX10; peroxin-10
No chloroplast target sequence found.