Gene: gene17115 (Fragilariopsis cylindrus)

Overview top

Gene Identifier
gene17115
Transcript Identifier
239407
Gene Type
Coding gene
Location
scaffold_6 : 2279002-2281827 : negative

Family Information

Homologous gene family
HOM02SEM011796
(7 genes in 4 species)
specific family
Orthologous gene family
ORTHO02SEM017624
(3 genes in 3 species)
specific family

Descriptions

eggnog_description
Interacts with EME1 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'- flap structures, D-loops, replication forks and nicked Holliday junctions. May be required in mitosis for the processing of stalled or collapsed replication fork intermediates. May be required in meiosis for the repair of meiosis-specific double strand breaks subsequent to single-end invasion (SEI) (By similarity)

Identifiers

Type Value
tid239407
idmRNA17118
GeneNamegene17115

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
EggNOGmapperDNA topological change
GO:0035825
IEA
EggNOGmapperhomologous recombination
GO:0000712
IEA
EggNOGmapperresolution of meiotic recombination intermediates
GO:0000731
IEA
EggNOGmapperDNA synthesis involved in DNA repair
GO:0006261
IEA
EggNOGmapperDNA-dependent DNA replication
GO:1901991
IEA
EggNOGmappernegative regulation of mitotic cell cycle phase transition
GO:0000711
IEA
EggNOGmappermeiotic DNA repair synthesis
GO:0090305
IEA
EggNOGmappernucleic acid phosphodiester bond hydrolysis
GO:0000709
IEA
EggNOGmappermeiotic joint molecule formation
GO:0033314
IEA
EggNOGmappermitotic DNA replication checkpoint
GO:0031573
IEA
EggNOGmapperintra-S DNA damage checkpoint
GO:0000727
IEA
EggNOGmapperdouble-strand break repair via break-induced replication
GO:0006301
IEA
EggNOGmapperpostreplication repair
GO:0009405
IEA
EggNOGmapperpathogenesis
GO:0031297
IEA
EggNOGmapperreplication fork processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
InterPronuclease activity
GO:0003677
IEA
InterProDNA binding
GO:0016894
IEA
EggNOGmapperendonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters
GO:0008821
IEA
EggNOGmappercrossover junction endodeoxyribonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
EggNOGmappermitochondrion
GO:0048476
IEA
EggNOGmapperHolliday junction resolvase complex
GO:0005634
IEA
EggNOGmappernucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR006166ERCC4 domain
IPR011335Restriction endonuclease type II-like

No MapMan annotations defined for this gene.
KeggID Description
K08991MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
No chloroplast target sequence found.