Gene: YPL029W (Saccharomyces cerevisiae strain S288C)

Overview top

Gene Identifier
YPL029W
Transcript Identifier
YPL029W
Gene Type
Coding gene
Location
XVI : 495506-497719 : positive

Family Information

Homologous gene family
HOM02SEM002433
(29 genes in 22 species)
specific family
Orthologous gene family
ORTHO02SEM002947
(26 genes in 22 species)
specific family

Descriptions

gene_descr
ATP-dependent RNA helicase; component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron

Identifiers

Type Value
pidYPL029W
UniprotP32580
RefSeq_mRNANM_001183843.1
EMBLBK006949
EMBLM91167
EMBLU36624
SGDS000005950

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000372
IGI
Genome ProjectGroup I intron splicing
GO:0000372
IGI
Gene OntologyGroup I intron splicing1
GO:0006264
IMP
Genome Projectmitochondrial DNA replication
GO:0006264
IMP
Gene Ontologymitochondrial DNA replication2
GO:0000965
IBA
Genome Projectmitochondrial RNA 3'-end processing
GO:0090503
IEA
Genome ProjectRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0000957
IMP
Genome Projectmitochondrial RNA catabolic process
GO:0000957
IMP
Gene Ontologymitochondrial RNA catabolic process3
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process ENSG00000156502
GO:0012501
IEA
PLAZA Integrative Orthologyprogrammed cell death ENSG00000156502
GO:0071103
IEA
PLAZA Integrative OrthologyDNA conformation change ENSG00000156502
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process ENSG00000156502
GO:0031124
IEA
PLAZA Integrative OrthologymRNA 3'-end processing FBgn0037232
GO:0043066
IEA
PLAZA Integrative Orthologynegative regulation of apoptotic process ENSG00000156502
GO:0070131
IEA
PLAZA Integrative Orthologypositive regulation of mitochondrial translation FBgn0037232
GO:0010604
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule metabolic process ENSG00000156502
GO:0010608
IEA
PLAZA Integrative Orthologyposttranscriptional regulation of gene expression FBgn0037232
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process FBgn0037232
GO:0006753
IEA
PLAZA Integrative Orthologynucleoside phosphate metabolic process FBgn0037232
GO:0044267
IEA
PLAZA Integrative Orthologycellular protein metabolic process FBgn0037232
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process ENSG00000156502
GO:0048229
IEA
PLAZA Integrative Orthologygametophyte development AT4G14790
GO:0015980
IEA
PLAZA Integrative Orthologyenergy derivation by oxidation of organic compounds FBgn0037232
GO:0090646
IEA
PLAZA Integrative Orthologymitochondrial tRNA processing FBgn0037232
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process AT4G14790
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process AT4G14790
GO:0010557
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule biosynthetic process FBgn0037232
GO:0034248
IEA
PLAZA Integrative Orthologyregulation of cellular amide metabolic process FBgn0037232
GO:0016310
IEA
PLAZA Integrative Orthologyphosphorylation FBgn0037232
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process FBgn0037232
GO:0032508
IEA
PLAZA Integrative OrthologyDNA duplex unwinding ENSG00000156502
GO:1901566
IEA
PLAZA Integrative Orthologyorganonitrogen compound biosynthetic process FBgn0037232
GO:0032989
IEA
PLAZA Integrative Orthologycellular component morphogenesis ENSG00000156502
GO:1901564
IEA
PLAZA Integrative Orthologyorganonitrogen compound metabolic process FBgn0037232
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development AT4G14790
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development AT4G14790
GO:0032990
IEA
PLAZA Integrative Orthologycell part morphogenesis ENSG00000156502
GO:0043603
IEA
PLAZA Integrative Orthologycellular amide metabolic process FBgn0037232
GO:0019538
IEA
PLAZA Integrative Orthologyprotein metabolic process FBgn0037232
GO:0034250
IEA
PLAZA Integrative Orthologypositive regulation of cellular amide metabolic process FBgn0037232
GO:0070827
IEA
PLAZA Integrative Orthologychromatin maintenance ENSG00000156502
GO:0043604
IEA
PLAZA Integrative Orthologyamide biosynthetic process FBgn0037232
GO:0016049
IEA
PLAZA Integrative Orthologycell growth ENSG00000156502
GO:0043043
IEA
PLAZA Integrative Orthologypeptide biosynthetic process FBgn0037232
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression ENSG00000156502
GO:0046034
IEA
PLAZA Integrative OrthologyATP metabolic process FBgn0037232
GO:0010628
IEA
PLAZA Integrative Orthologypositive regulation of gene expression FBgn0037232
GO:0006412
IEA
PLAZA Integrative Orthologytranslation FBgn0037232
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression ENSG00000156502
GO:0043954
IEA
PLAZA Integrative Orthologycellular component maintenance ENSG00000156502
GO:0006378
IEA
PLAZA Integrative OrthologymRNA polyadenylation FBgn0037232
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process FBgn0037232
GO:0045333
IEA
PLAZA Integrative Orthologycellular respiration FBgn0037232
GO:0042981
IEA
PLAZA Integrative Orthologyregulation of apoptotic process ENSG00000156502
GO:0034660
IEA
PLAZA Integrative OrthologyncRNA metabolic process FBgn0037232
GO:0009126
IEA
PLAZA Integrative Orthologypurine nucleoside monophosphate metabolic process FBgn0037232
GO:0008033
IEA
PLAZA Integrative OrthologytRNA processing FBgn0037232
GO:0009123
IEA
PLAZA Integrative Orthologynucleoside monophosphate metabolic process FBgn0037232
GO:0044528
IEA
PLAZA Integrative Orthologyregulation of mitochondrial mRNA stability FBgn0037232
GO:0006091
IEA
PLAZA Integrative Orthologygeneration of precursor metabolites and energy FBgn0037232
GO:0070129
IEA
PLAZA Integrative Orthologyregulation of mitochondrial translation FBgn0037232
GO:0006915
IEA
PLAZA Integrative Orthologyapoptotic process ENSG00000156502
GO:0017144
IEA
PLAZA Integrative Orthologydrug metabolic process FBgn0037232
GO:0006518
IEA
PLAZA Integrative Orthologypeptide metabolic process FBgn0037232
GO:0006119
IEA
PLAZA Integrative Orthologyoxidative phosphorylation FBgn0037232
GO:0009117
IEA
PLAZA Integrative Orthologynucleotide metabolic process FBgn0037232
GO:0006402
IEA
PLAZA Integrative OrthologymRNA catabolic process ENSG00000156502
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process ENSG00000156502
GO:0051173
IEA
PLAZA Integrative Orthologypositive regulation of nitrogen compound metabolic process ENSG00000156502
GO:0045727
IEA
PLAZA Integrative Orthologypositive regulation of translation FBgn0037232
GO:0009199
IEA
PLAZA Integrative Orthologyribonucleoside triphosphate metabolic process FBgn0037232
GO:0061013
IEA
PLAZA Integrative Orthologyregulation of mRNA catabolic process FBgn0037232
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process ENSG00000156502
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process FBgn0037232
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process ENSG00000156502
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process ENSG00000156502
GO:0055114
IEA
PLAZA Integrative Orthologyoxidation-reduction process FBgn0037232
GO:0019693
IEA
PLAZA Integrative Orthologyribose phosphate metabolic process FBgn0037232
GO:0071026
IEA
PLAZA Integrative Orthologycytoplasmic RNA surveillance ENSG00000156502
GO:0071025
IEA
PLAZA Integrative OrthologyRNA surveillance ENSG00000156502
GO:0031328
IEA
PLAZA Integrative Orthologypositive regulation of cellular biosynthetic process FBgn0037232
GO:0051276
IEA
PLAZA Integrative Orthologychromosome organization ENSG00000156502
GO:0031329
IEA
PLAZA Integrative Orthologyregulation of cellular catabolic process ENSG00000156502
GO:2000827
IEA
PLAZA Integrative Orthologymitochondrial RNA surveillance ENSG00000156502
GO:0006796
IEA
PLAZA Integrative Orthologyphosphate-containing compound metabolic process FBgn0037232
GO:0000962
IEA
PLAZA Integrative Orthologypositive regulation of mitochondrial RNA catabolic process ENSG00000156502
GO:0000960
IEA
PLAZA Integrative Orthologyregulation of mitochondrial RNA catabolic process ENSG00000156502
GO:0006397
IEA
PLAZA Integrative OrthologymRNA processing FBgn0037232
GO:0006793
IEA
PLAZA Integrative Orthologyphosphorus metabolic process FBgn0037232
GO:1901135
IEA
PLAZA Integrative Orthologycarbohydrate derivative metabolic process FBgn0037232
GO:0006310
IEA
PLAZA Integrative OrthologyDNA recombination ENSG00000156502
GO:0006399
IEA
PLAZA Integrative OrthologytRNA metabolic process FBgn0037232
GO:0009144
IEA
PLAZA Integrative Orthologypurine nucleoside triphosphate metabolic process FBgn0037232
GO:1903311
IEA
PLAZA Integrative Orthologyregulation of mRNA metabolic process FBgn0037232
GO:0055086
IEA
PLAZA Integrative Orthologynucleobase-containing small molecule metabolic process FBgn0037232
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process ENSG00000156502
GO:0031331
IEA
PLAZA Integrative Orthologypositive regulation of cellular catabolic process ENSG00000156502
GO:0009141
IEA
PLAZA Integrative Orthologynucleoside triphosphate metabolic process FBgn0037232
GO:0032268
IEA
PLAZA Integrative Orthologyregulation of cellular protein metabolic process FBgn0037232
GO:0032543
IEA
PLAZA Integrative Orthologymitochondrial translation FBgn0037232
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process ENSG00000156502
GO:0072521
IEA
PLAZA Integrative Orthologypurine-containing compound metabolic process FBgn0037232
GO:0097222
IEA
PLAZA Integrative Orthologymitochondrial mRNA polyadenylation FBgn0037232
GO:0070584
IEA
PLAZA Integrative Orthologymitochondrion morphogenesis ENSG00000156502
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process ENSG00000156502
GO:0006417
IEA
PLAZA Integrative Orthologyregulation of translation FBgn0037232
GO:0043487
IEA
PLAZA Integrative Orthologyregulation of RNA stability FBgn0037232
GO:0022900
IEA
PLAZA Integrative Orthologyelectron transport chain FBgn0037232
GO:0009894
IEA
PLAZA Integrative Orthologyregulation of catabolic process ENSG00000156502
GO:0043488
IEA
PLAZA Integrative Orthologyregulation of mRNA stability FBgn0037232
GO:0009653
IEA
PLAZA Integrative Orthologyanatomical structure morphogenesis ENSG00000156502
GO:0060548
IEA
PLAZA Integrative Orthologynegative regulation of cell death ENSG00000156502
GO:0009896
IEA
PLAZA Integrative Orthologypositive regulation of catabolic process ENSG00000156502
GO:0009259
IEA
PLAZA Integrative Orthologyribonucleotide metabolic process FBgn0037232
GO:0009891
IEA
PLAZA Integrative Orthologypositive regulation of biosynthetic process FBgn0037232
GO:0022904
IEA
PLAZA Integrative Orthologyrespiratory electron transport chain FBgn0037232
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process ENSG00000156502
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process ENSG00000156502
GO:0000958
IEA
PLAZA Integrative Orthologymitochondrial mRNA catabolic process ENSG00000156502
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process ENSG00000156502
GO:0032270
IEA
PLAZA Integrative Orthologypositive regulation of cellular protein metabolic process FBgn0037232
GO:0032392
IEA
PLAZA Integrative OrthologyDNA geometric change ENSG00000156502
GO:0035946
IEA
PLAZA Integrative Orthologymitochondrial mRNA surveillance ENSG00000156502
GO:0010941
IEA
PLAZA Integrative Orthologyregulation of cell death ENSG00000156502
GO:0035945
IEA
PLAZA Integrative Orthologymitochondrial ncRNA surveillance ENSG00000156502
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process ENSG00000156502
GO:0051254
IEA
PLAZA Integrative Orthologypositive regulation of RNA metabolic process ENSG00000156502
GO:0001558
IEA
PLAZA Integrative Orthologyregulation of cell growth ENSG00000156502
GO:0040007
IEA
PLAZA Integrative Orthologygrowth ENSG00000156502
GO:0009205
IEA
PLAZA Integrative Orthologypurine ribonucleoside triphosphate metabolic process FBgn0037232
GO:0040008
IEA
PLAZA Integrative Orthologyregulation of growth ENSG00000156502
GO:0043631
IEA
PLAZA Integrative OrthologyRNA polyadenylation FBgn0037232
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process ENSG00000156502
GO:0009167
IEA
PLAZA Integrative Orthologypurine ribonucleoside monophosphate metabolic process FBgn0037232
GO:0009561
IEA
PLAZA Integrative Orthologymegagametogenesis AT4G14790
GO:0009161
IEA
PLAZA Integrative Orthologyribonucleoside monophosphate metabolic process FBgn0037232
GO:0065008
IEA
PLAZA Integrative Orthologyregulation of biological quality FBgn0037232
GO:0045935
IEA
PLAZA Integrative Orthologypositive regulation of nucleobase-containing compound metabolic process ENSG00000156502
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation ENSG00000156502
GO:0051128
IEA
PLAZA Integrative Orthologyregulation of cellular component organization ENSG00000156502
GO:0090615
IEA
PLAZA Integrative Orthologymitochondrial mRNA processing FBgn0037232
GO:0090616
IEA
PLAZA Integrative Orthologymitochondrial mRNA 3'-end processing FBgn0037232
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process FBgn0037232
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process ENSG00000156502
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process ENSG00000156502
GO:0008219
IEA
PLAZA Integrative Orthologycell death ENSG00000156502
GO:0030307
IEA
PLAZA Integrative Orthologypositive regulation of cell growth ENSG00000156502
GO:0051246
IEA
PLAZA Integrative Orthologyregulation of protein metabolic process FBgn0037232
GO:0051247
IEA
PLAZA Integrative Orthologypositive regulation of protein metabolic process FBgn0037232
GO:0044281
IEA
PLAZA Integrative Orthologysmall molecule metabolic process FBgn0037232
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process ENSG00000156502
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process ENSG00000156502
GO:0006325
IEA
PLAZA Integrative Orthologychromatin organization ENSG00000156502
GO:0009553
IEA
PLAZA Integrative Orthologyembryo sac development AT4G14790
GO:0043069
IEA
PLAZA Integrative Orthologynegative regulation of programmed cell death ENSG00000156502
GO:0043067
IEA
PLAZA Integrative Orthologyregulation of programmed cell death ENSG00000156502
GO:0006163
IEA
PLAZA Integrative Orthologypurine nucleotide metabolic process FBgn0037232
GO:0009555
IEA
PLAZA Integrative Orthologypollen development AT4G14790
GO:0009150
IEA
PLAZA Integrative Orthologypurine ribonucleotide metabolic process FBgn0037232
GO:0034470
IEA
PLAZA Integrative OrthologyncRNA processing FBgn0037232
GO:0019637
IEA
PLAZA Integrative Orthologyorganophosphate metabolic process FBgn0037232
GO:0045927
IEA
PLAZA Integrative Orthologypositive regulation of growth ENSG00000156502

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
Genome ProjectRNA binding
GO:0004386
IEA
Genome Projecthelicase activity
GO:0008859
IDA
Genome Projectexoribonuclease II activity
GO:0008859
IDA
Gene Ontologyexoribonuclease II activity4
GO:0016817
IEA
Genome Projecthydrolase activity, acting on acid anhydrides
GO:0000166
IEA
Genome Projectnucleotide binding
GO:0004004
IDA
Genome ProjectATP-dependent RNA helicase activity
GO:0004004
IDA
Gene OntologyATP-dependent RNA helicase activity3 4
GO:0016787
IEA
Genome Projecthydrolase activity
GO:0005524
IEA
Genome ProjectATP binding
GO:0042802
IEA
PLAZA Integrative Orthologyidentical protein binding ENSG00000156502
GO:0042803
IEA
PLAZA Integrative Orthologyprotein homodimerization activity ENSG00000156502
GO:0003678
IEA
PLAZA Integrative OrthologyDNA helicase activity ENSG00000156502
GO:0003677
IEA
PLAZA Integrative OrthologyDNA binding ENSG00000156502
GO:0140097
IEA
PLAZA Integrative Orthologycatalytic activity, acting on DNA ENSG00000156502
GO:0034458
IEA
PLAZA Integrative Orthology3'-5' RNA helicase activity ENSG00000156502
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000156502
GO:0046983
IEA
PLAZA Integrative Orthologyprotein dimerization activity ENSG00000156502
GO:0003725
IEA
PLAZA Integrative Orthologydouble-stranded RNA binding ENSG00000156502

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IDA
IEA
Genome Projectmitochondrion
GO:0005739
Gene Ontologymitochondrion5 6
GO:0045025
IDA
Genome Projectmitochondrial degradosome
GO:0045025
IDA
Gene Ontologymitochondrial degradosome3
GO:0000262
IDA
Genome Projectmitochondrial chromosome
GO:0000262
IDA
Gene Ontologymitochondrial chromosome2
GO:0005759
IEA
Genome Projectmitochondrial matrix
GO:0005634
IEA
PLAZA Integrative Orthologynucleus ENSG00000156502

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001650Helicase, C-terminal
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR022192Mitochondrial degradasome RNA helicase subunit, C-terminal domain
IPR027417P-loop containing nucleoside triphosphate hydrolase

No MapMan annotations defined for this gene.
KeggID Description
K17675SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13]
No chloroplast target sequence found.