Gene: YOR090C (Saccharomyces cerevisiae strain S288C)

Overview top

Gene Identifier
YOR090C
Transcript Identifier
YOR090C
Gene Type
Coding gene
Location
XV : 491123-492841 : negative

Family Information

Homologous gene family
HOM02SEM001691
(36 genes in 10 species)
specific family

Descriptions

gene_descr
Mitochondrial type 2C protein phosphatase (PP2C); involved in regulation of pyruvate dehydrogenase activity by dephosphorylating the serine 133 of the Pda1p subunit; localizes to the intermembrane space and is imported via the presequence pathway and processed by the inner membrane protease (Imp1p-Imp2p); acts in concert with kinases Pkp1p and Pkp2p and phosphatase Ptc6p

Identifiers

Type Value
pidYOR090C
UniprotQ12511
RefSeq_mRNANM_001183509.1
EMBLBK006948
EMBLX94335
EMBLZ74998
SGDS000005616

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006470
IDA
IEA
Genome Projectprotein dephosphorylation
GO:0006470
IDA
Gene Ontologyprotein dephosphorylation1
GO:0043085
IMP
Genome Projectpositive regulation of catalytic activity
GO:0050790
IMP
Genome Projectregulation of catalytic activity
GO:0090407
IEA
PLAZA Integrative Orthologyorganophosphate biosynthetic process ENSG00000164951
GO:0010565
IEA
PLAZA Integrative Orthologyregulation of cellular ketone metabolic process ENSG00000164951
GO:0051239
IEA
PLAZA Integrative Orthologyregulation of multicellular organismal process AT5G02760
GO:0006629
IEA
PLAZA Integrative Orthologylipid metabolic process ENSG00000164951
GO:0051196
IEA
PLAZA Integrative Orthologyregulation of coenzyme metabolic process ENSG00000164951
GO:0044272
IEA
PLAZA Integrative Orthologysulfur compound biosynthetic process ENSG00000164951
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process AT2G35350
GO:0009617
IEA
PLAZA Integrative Orthologyresponse to bacterium AT3G12620
GO:0006753
IEA
PLAZA Integrative Orthologynucleoside phosphate metabolic process ENSG00000164951
GO:0006631
IEA
PLAZA Integrative Orthologyfatty acid metabolic process ENSG00000164951
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process AT2G35350
GO:0009108
IEA
PLAZA Integrative Orthologycoenzyme biosynthetic process ENSG00000164951
GO:0048507
IEA
PLAZA Integrative Orthologymeristem development AT2G35350
GO:0007568
IEA
PLAZA Integrative Orthologyaging AT5G02760
GO:0042762
IEA
PLAZA Integrative Orthologyregulation of sulfur metabolic process ENSG00000164951
GO:0048589
IEA
PLAZA Integrative Orthologydevelopmental growth AT2G35350
GO:1901576
IEA
PLAZA Integrative Orthologyorganic substance biosynthetic process AT2G35350
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G35350
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated AT2G35350
GO:0048509
IEA
PLAZA Integrative Orthologyregulation of meristem development AT2G46920
GO:0035970
IEA
PLAZA Integrative Orthologypeptidyl-threonine dephosphorylation ENSG00000164951
GO:1901293
IEA
PLAZA Integrative Orthologynucleoside phosphate biosynthetic process ENSG00000164951
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process AT5G02760
GO:0034645
IEA
PLAZA Integrative Orthologycellular macromolecule biosynthetic process AT2G35350
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus AT3G12620
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process AT5G02760
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process AT2G35350
GO:0032101
IEA
PLAZA Integrative Orthologyregulation of response to external stimulus AT3G12620
GO:0050812
IEA
PLAZA Integrative Orthologyregulation of acyl-CoA biosynthetic process ENSG00000164951
GO:0034248
IEA
PLAZA Integrative Orthologyregulation of cellular amide metabolic process ENSG00000164951
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process AT2G35350
GO:0032102
IEA
PLAZA Integrative Orthologynegative regulation of response to external stimulus AT3G12620
GO:0051186
IEA
PLAZA Integrative Orthologycofactor metabolic process ENSG00000164951
GO:0048585
IEA
PLAZA Integrative Orthologynegative regulation of response to stimulus AT3G12620
GO:0051188
IEA
PLAZA Integrative Orthologycofactor biosynthetic process ENSG00000164951
GO:0009605
IEA
PLAZA Integrative Orthologyresponse to external stimulus AT3G12620
GO:0032989
IEA
PLAZA Integrative Orthologycellular component morphogenesis AT2G35350
GO:0048583
IEA
PLAZA Integrative Orthologyregulation of response to stimulus AT3G12620
GO:0009607
IEA
PLAZA Integrative Orthologyresponse to biotic stimulus AT3G12620
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription AT2G35350
GO:1901566
IEA
PLAZA Integrative Orthologyorganonitrogen compound biosynthetic process ENSG00000164951
GO:0051193
IEA
PLAZA Integrative Orthologyregulation of cofactor metabolic process ENSG00000164951
GO:0009059
IEA
PLAZA Integrative Orthologymacromolecule biosynthetic process AT2G35350
GO:0009058
IEA
PLAZA Integrative Orthologybiosynthetic process AT2G35350
GO:0044255
IEA
PLAZA Integrative Orthologycellular lipid metabolic process ENSG00000164951
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development AT5G02760
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development AT5G02760
GO:0043603
IEA
PLAZA Integrative Orthologycellular amide metabolic process ENSG00000164951
GO:0043207
IEA
PLAZA Integrative Orthologyresponse to external biotic stimulus AT3G12620
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process AT2G35350
GO:0043604
IEA
PLAZA Integrative Orthologyamide biosynthetic process ENSG00000164951
GO:0016049
IEA
PLAZA Integrative Orthologycell growth AT2G35350
GO:0006090
IEA
PLAZA Integrative Orthologypyruvate metabolic process ENSG00000164951
GO:0046390
IEA
PLAZA Integrative Orthologyribose phosphate biosynthetic process ENSG00000164951
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis AT2G35350
GO:0010467
IEA
PLAZA Integrative Orthologygene expression AT2G35350
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process AT2G35350
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression AT2G35350
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization AT2G35350
GO:0051174
IEA
PLAZA Integrative Orthologyregulation of phosphorus metabolic process ENSG00000164951
GO:0048731
IEA
PLAZA Integrative Orthologysystem development AT5G02760
GO:0098542
IEA
PLAZA Integrative Orthologydefense response to other organism AT3G12620
GO:0043436
IEA
PLAZA Integrative Orthologyoxoacid metabolic process ENSG00000164951
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process AT2G35350
GO:0009888
IEA
PLAZA Integrative Orthologytissue development AT2G35350
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process AT2G35350
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process AT2G35350
GO:0042742
IEA
PLAZA Integrative Orthologydefense response to bacterium AT3G12620
GO:0010073
IEA
PLAZA Integrative Orthologymeristem maintenance AT2G35350
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process AT2G35350
GO:0019827
IEA
PLAZA Integrative Orthologystem cell population maintenance AT2G35350
GO:0010074
IEA
PLAZA Integrative Orthologymaintenance of meristem identity AT2G35350
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process AT2G35350
GO:0071616
IEA
PLAZA Integrative Orthologyacyl-CoA biosynthetic process ENSG00000164951
GO:0002832
IEA
PLAZA Integrative Orthologynegative regulation of response to biotic stimulus AT3G12620
GO:0002831
IEA
PLAZA Integrative Orthologyregulation of response to biotic stimulus AT3G12620
GO:0042180
IEA
PLAZA Integrative Orthologycellular ketone metabolic process ENSG00000164951
GO:0006637
IEA
PLAZA Integrative Orthologyacyl-CoA metabolic process ENSG00000164951
GO:0022603
IEA
PLAZA Integrative Orthologyregulation of anatomical structure morphogenesis AT2G46920
GO:0009117
IEA
PLAZA Integrative Orthologynucleotide metabolic process ENSG00000164951
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process AT2G35350
GO:0048831
IEA
PLAZA Integrative Orthologyregulation of shoot system development AT5G02760
GO:0034032
IEA
PLAZA Integrative Orthologypurine nucleoside bisphosphate metabolic process ENSG00000164951
GO:0060560
IEA
PLAZA Integrative Orthologydevelopmental growth involved in morphogenesis AT2G35350
GO:0006085
IEA
PLAZA Integrative Orthologyacetyl-CoA biosynthetic process ENSG00000164951
GO:1900055
IEA
PLAZA Integrative Orthologyregulation of leaf senescence AT5G02760
GO:0034033
IEA
PLAZA Integrative Orthologypurine nucleoside bisphosphate biosynthetic process ENSG00000164951
GO:0006084
IEA
PLAZA Integrative Orthologyacetyl-CoA metabolic process ENSG00000164951
GO:1900056
IEA
PLAZA Integrative Orthologynegative regulation of leaf senescence AT5G02760
GO:0006086
IEA
PLAZA Integrative Orthologyacetyl-CoA biosynthetic process from pyruvate ENSG00000164951
GO:1905622
IEA
PLAZA Integrative Orthologynegative regulation of leaf development AT5G02760
GO:0034030
IEA
PLAZA Integrative Orthologyribonucleoside bisphosphate biosynthetic process ENSG00000164951
GO:0006082
IEA
PLAZA Integrative Orthologyorganic acid metabolic process ENSG00000164951
GO:0019217
IEA
PLAZA Integrative Orthologyregulation of fatty acid metabolic process ENSG00000164951
GO:2000026
IEA
PLAZA Integrative Orthologyregulation of multicellular organismal development AT5G02760
GO:0033865
IEA
PLAZA Integrative Orthologynucleoside bisphosphate metabolic process ENSG00000164951
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process AT2G35350
GO:0033866
IEA
PLAZA Integrative Orthologynucleoside bisphosphate biosynthetic process ENSG00000164951
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process AT2G35350
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process AT2G35350
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process AT2G35350
GO:0019216
IEA
PLAZA Integrative Orthologyregulation of lipid metabolic process ENSG00000164951
GO:0098727
IEA
PLAZA Integrative Orthologymaintenance of cell number AT2G35350
GO:2000024
IEA
PLAZA Integrative Orthologyregulation of leaf development AT5G02760
GO:0019693
IEA
PLAZA Integrative Orthologyribose phosphate metabolic process ENSG00000164951
GO:0006952
IEA
PLAZA Integrative Orthologydefense response AT3G12620
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress AT3G12620
GO:1901137
IEA
PLAZA Integrative Orthologycarbohydrate derivative biosynthetic process ENSG00000164951
GO:0048827
IEA
PLAZA Integrative Orthologyphyllome development AT5G02760
GO:0055086
IEA
PLAZA Integrative Orthologynucleobase-containing small molecule metabolic process ENSG00000164951
GO:1901135
IEA
PLAZA Integrative Orthologycarbohydrate derivative metabolic process ENSG00000164951
GO:0006790
IEA
PLAZA Integrative Orthologysulfur compound metabolic process ENSG00000164951
GO:0009260
IEA
PLAZA Integrative Orthologyribonucleotide biosynthetic process ENSG00000164951
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process AT2G35350
GO:0032787
IEA
PLAZA Integrative Orthologymonocarboxylic acid metabolic process ENSG00000164951
GO:0033875
IEA
PLAZA Integrative Orthologyribonucleoside bisphosphate metabolic process ENSG00000164951
GO:0010510
IEA
PLAZA Integrative Orthologyregulation of acetyl-CoA biosynthetic process from pyruvate ENSG00000164951
GO:0072522
IEA
PLAZA Integrative Orthologypurine-containing compound biosynthetic process ENSG00000164951
GO:0051704
IEA
PLAZA Integrative Orthologymulti-organism process AT3G12620
GO:0019220
IEA
PLAZA Integrative Orthologyregulation of phosphate metabolic process ENSG00000164951
GO:0099402
IEA
PLAZA Integrative Orthologyplant organ development AT5G02760
GO:0072521
IEA
PLAZA Integrative Orthologypurine-containing compound metabolic process ENSG00000164951
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process AT2G35350
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process AT2G35350
GO:0009933
IEA
PLAZA Integrative Orthologymeristem structural organization AT2G35350
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process AT2G35350
GO:0009934
IEA
PLAZA Integrative Orthologyregulation of meristem structural organization AT2G46920
GO:0009653
IEA
PLAZA Integrative Orthologyanatomical structure morphogenesis AT2G35350
GO:0030808
IEA
PLAZA Integrative Orthologyregulation of nucleotide biosynthetic process ENSG00000164951
GO:0009259
IEA
PLAZA Integrative Orthologyribonucleotide metabolic process ENSG00000164951
GO:0035384
IEA
PLAZA Integrative Orthologythioester biosynthetic process ENSG00000164951
GO:0006140
IEA
PLAZA Integrative Orthologyregulation of nucleotide metabolic process ENSG00000164951
GO:0035383
IEA
PLAZA Integrative Orthologythioester metabolic process ENSG00000164951
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process AT2G35350
GO:0051707
IEA
PLAZA Integrative Orthologyresponse to other organism AT3G12620
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process AT2G35350
GO:0031348
IEA
PLAZA Integrative Orthologynegative regulation of defense response AT3G12620
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process AT2G35350
GO:0031347
IEA
PLAZA Integrative Orthologyregulation of defense response AT3G12620
GO:0019752
IEA
PLAZA Integrative Orthologycarboxylic acid metabolic process ENSG00000164951
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process AT2G35350
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription AT2G35350
GO:0048532
IEA
PLAZA Integrative Orthologyanatomical structure arrangement AT2G35350
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process AT2G35350
GO:0040007
IEA
PLAZA Integrative Orthologygrowth AT2G35350
GO:1900424
IEA
PLAZA Integrative Orthologyregulation of defense response to bacterium AT3G12620
GO:0006732
IEA
PLAZA Integrative Orthologycoenzyme metabolic process ENSG00000164951
GO:1900425
IEA
PLAZA Integrative Orthologynegative regulation of defense response to bacterium AT3G12620
GO:1900542
IEA
PLAZA Integrative Orthologyregulation of purine nucleotide metabolic process ENSG00000164951
GO:0062012
IEA
PLAZA Integrative Orthologyregulation of small molecule metabolic process ENSG00000164951
GO:0009165
IEA
PLAZA Integrative Orthologynucleotide biosynthetic process ENSG00000164951
GO:0010150
IEA
PLAZA Integrative Orthologyleaf senescence AT5G02760
GO:0000902
IEA
PLAZA Integrative Orthologycell morphogenesis AT2G35350
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process AT2G35350
GO:0048366
IEA
PLAZA Integrative Orthologyleaf development AT5G02760
GO:0051241
IEA
PLAZA Integrative Orthologynegative regulation of multicellular organismal process AT5G02760
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process AT2G35350
GO:0048367
IEA
PLAZA Integrative Orthologyshoot system development AT5G02760
GO:0009826
IEA
PLAZA Integrative Orthologyunidimensional cell growth AT2G35350
GO:0050793
IEA
PLAZA Integrative Orthologyregulation of developmental process AT5G02760
GO:0044281
IEA
PLAZA Integrative Orthologysmall molecule metabolic process ENSG00000164951
GO:0051093
IEA
PLAZA Integrative Orthologynegative regulation of developmental process AT5G02760
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process AT5G02760
GO:0090693
IEA
PLAZA Integrative Orthologyplant organ senescence AT5G02760
GO:0006164
IEA
PLAZA Integrative Orthologypurine nucleotide biosynthetic process ENSG00000164951
GO:0080134
IEA
PLAZA Integrative Orthologyregulation of response to stress AT3G12620
GO:1900371
IEA
PLAZA Integrative Orthologyregulation of purine nucleotide biosynthetic process ENSG00000164951
GO:0006163
IEA
PLAZA Integrative Orthologypurine nucleotide metabolic process ENSG00000164951
GO:0009150
IEA
PLAZA Integrative Orthologypurine ribonucleotide metabolic process ENSG00000164951
GO:0019637
IEA
PLAZA Integrative Orthologyorganophosphate metabolic process ENSG00000164951
GO:0043900
IEA
PLAZA Integrative Orthologyregulation of multi-organism process AT3G12620
GO:0009152
IEA
PLAZA Integrative Orthologypurine ribonucleotide biosynthetic process ENSG00000164951
GO:0043901
IEA
PLAZA Integrative Orthologynegative regulation of multi-organism process AT3G12620
GO:1904184
IMP
Gene Ontologypositive regulation of pyruvate dehydrogenase activity2 3
GO:0070262
IMP
Gene Ontologypeptidyl-serine dephosphorylation3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004722
IDA
ISS
IEA
Genome Projectprotein serine/threonine phosphatase activity
GO:0004722
IDA
ISS
Gene Ontologyprotein serine/threonine phosphatase activity1
GO:0043169
IEA
Genome Projectcation binding
GO:0004721
IEA
Genome Projectphosphoprotein phosphatase activity
GO:0003824
IEA
Genome Projectcatalytic activity
GO:0046872
IEA
Genome Projectmetal ion binding
GO:0016787
IEA
Genome Projecthydrolase activity
GO:0004741
ISS
IEA
Genome Project[pyruvate dehydrogenase (lipoamide)] phosphatase activity
GO:0004741
IMP
ISS
Gene Ontology[pyruvate dehydrogenase (lipoamide)] phosphatase activity2 3
GO:0005543
IEA
PLAZA Integrative Orthologyphospholipid binding AT2G35350
GO:0043168
IEA
PLAZA Integrative Orthologyanion binding AT2G35350
GO:0008289
IEA
PLAZA Integrative Orthologylipid binding AT2G35350
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding AT5G02760

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IDA
IEA
Genome Projectmitochondrion
GO:0005739
IDA
Gene Ontologymitochondrion2 4 5 6
GO:0005758
IDA
IEA
Genome Projectmitochondrial intermembrane space
GO:0005758
IDA
Gene Ontologymitochondrial intermembrane space7
GO:0016020
IEA
PLAZA Integrative Orthologymembrane AT3G12620
GO:0071944
IEA
PLAZA Integrative Orthologycell periphery AT3G12620
GO:0005634
IEA
PLAZA Integrative Orthologynucleus FBgn0029958
GO:0005886
IEA
PLAZA Integrative Orthologyplasma membrane AT3G12620
GO:0005967
IDA
Gene Ontologymitochondrial pyruvate dehydrogenase complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR000222PPM-type phosphatase, divalent cation binding
IPR001932PPM-type phosphatase domain
IPR015655Protein phosphatase 2C family

No MapMan annotations defined for this gene.
KeggID Description
K01102PDP; pyruvate dehydrogenase phosphatase [EC:3.1.3.43]
No chloroplast target sequence found.