Gene: YMR072W (Saccharomyces cerevisiae strain S288C)

Overview top

Gene Identifier
YMR072W
Transcript Identifier
YMR072W
Gene Type
Coding gene
Location
XIII : 411569-412120 : positive

Family Information

Homologous gene family
HOM02SEM000389
(90 genes in 26 species)
specific family

Descriptions

gene_descr
Mitochondrial DNA-binding protein; involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation; ABF2 has a paralog, IXR1, that arose from the whole genome duplication

Identifiers

Type Value
pidYMR072W
UniprotQ02486
RefSeq_mRNANM_001182570.1
EMBLAJ223169
EMBLAY557967
EMBLBK006946
EMBLM73753
EMBLZ48952
SGDS000004676

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000002
IMP
Genome Projectmitochondrial genome maintenance
GO:0000002
IMP
Gene Ontologymitochondrial genome maintenance1
GO:0000001
IMP
Genome Projectmitochondrion inheritance
GO:0000001
IMP
Gene Ontologymitochondrion inheritance1
GO:0090139
IMP
Genome Projectmitochondrial DNA packaging
GO:0090139
IMP
Gene Ontologymitochondrial DNA packaging2
GO:0031324
IEA
PLAZA Integrative Orthologynegative regulation of cellular metabolic process YKL032C
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process YKL032C
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process YKL032C
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process YKL032C
GO:0071704
IEA
PLAZA Integrative Orthologyorganic substance metabolic process YKL032C
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process YKL032C
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process YKL032C
GO:0051716
IEA
PLAZA Integrative Orthologycellular response to stimulus YKL032C
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process YKL032C
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process YKL032C
GO:0031327
IEA
PLAZA Integrative Orthologynegative regulation of cellular biosynthetic process YKL032C
GO:0006357
IEA
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II YKL032C
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress YKL032C
GO:1901576
IEA
PLAZA Integrative Orthologyorganic substance biosynthetic process YKL032C
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process YKL032C
GO:0034645
IEA
PLAZA Integrative Orthologycellular macromolecule biosynthetic process YKL032C
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus YKL032C
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process YKL032C
GO:0010558
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule biosynthetic process YKL032C
GO:0033554
IEA
PLAZA Integrative Orthologycellular response to stress YKL032C
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process YKL032C
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process YKL032C
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process YKL032C
GO:0044260
IEA
PLAZA Integrative Orthologycellular macromolecule metabolic process YKL032C
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process YKL032C
GO:0048583
IEA
PLAZA Integrative Orthologyregulation of response to stimulus YKL032C
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process YKL032C
GO:0043170
IEA
PLAZA Integrative Orthologymacromolecule metabolic process YKL032C
GO:0000122
IEA
PLAZA Integrative Orthologynegative regulation of transcription by RNA polymerase II YKL032C
GO:1903507
IEA
PLAZA Integrative Orthologynegative regulation of nucleic acid-templated transcription YKL032C
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription YKL032C
GO:2000819
IEA
PLAZA Integrative Orthologyregulation of nucleotide-excision repair YKL032C
GO:0009058
IEA
PLAZA Integrative Orthologybiosynthetic process YKL032C
GO:0009059
IEA
PLAZA Integrative Orthologymacromolecule biosynthetic process YKL032C
GO:0009890
IEA
PLAZA Integrative Orthologynegative regulation of biosynthetic process YKL032C
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process YKL032C
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process YKL032C
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process YKL032C
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process YKL032C
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process YKL032C
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription YKL032C
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process YKL032C
GO:0010467
IEA
PLAZA Integrative Orthologygene expression YKL032C
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression YKL032C
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process YKL032C
GO:0006807
IEA
PLAZA Integrative Orthologynitrogen compound metabolic process YKL032C
GO:0051253
IEA
PLAZA Integrative Orthologynegative regulation of RNA metabolic process YKL032C
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression YKL032C
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process YKL032C
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process YKL032C
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process YKL032C
GO:0045934
IEA
PLAZA Integrative Orthologynegative regulation of nucleobase-containing compound metabolic process YKL032C
GO:0006259
IEA
PLAZA Integrative OrthologyDNA metabolic process YKL032C
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process YKL032C
GO:0006974
IEA
PLAZA Integrative Orthologycellular response to DNA damage stimulus YKL032C
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process YKL032C
GO:0042221
IEA
PLAZA Integrative Orthologyresponse to chemical YKL032C
GO:0008152
IEA
PLAZA Integrative Orthologymetabolic process YKL032C
GO:2001020
IEA
PLAZA Integrative Orthologyregulation of response to DNA damage stimulus YKL032C
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process YKL032C
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process YKL032C
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation YKL032C
GO:0070887
IEA
PLAZA Integrative Orthologycellular response to chemical stimulus YKL032C
GO:0071456
IEA
PLAZA Integrative Orthologycellular response to hypoxia YKL032C
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process YKL032C
GO:2000113
IEA
PLAZA Integrative Orthologynegative regulation of cellular macromolecule biosynthetic process YKL032C
GO:0071453
IEA
PLAZA Integrative Orthologycellular response to oxygen levels YKL032C
GO:0045892
IEA
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated YKL032C
GO:0001666
IEA
PLAZA Integrative Orthologyresponse to hypoxia YKL032C
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process YKL032C
GO:0009628
IEA
PLAZA Integrative Orthologyresponse to abiotic stimulus YKL032C
GO:0070482
IEA
PLAZA Integrative Orthologyresponse to oxygen levels YKL032C
GO:1902679
IEA
PLAZA Integrative Orthologynegative regulation of RNA biosynthetic process YKL032C
GO:0044237
IEA
PLAZA Integrative Orthologycellular metabolic process YKL032C
GO:0044238
IEA
PLAZA Integrative Orthologyprimary metabolic process YKL032C
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process YKL032C
GO:0036293
IEA
PLAZA Integrative Orthologyresponse to decreased oxygen levels YKL032C
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process YKL032C
GO:0051052
IEA
PLAZA Integrative Orthologyregulation of DNA metabolic process YKL032C
GO:0006366
IEA
PLAZA Integrative Orthologytranscription by RNA polymerase II YKL032C
GO:0080135
IEA
PLAZA Integrative Orthologyregulation of cellular response to stress YKL032C
GO:0006289
IEA
PLAZA Integrative Orthologynucleotide-excision repair YKL032C
GO:0051172
IEA
PLAZA Integrative Orthologynegative regulation of nitrogen compound metabolic process YKL032C
GO:0080134
IEA
PLAZA Integrative Orthologyregulation of response to stress YKL032C
GO:0006282
IEA
PLAZA Integrative Orthologyregulation of DNA repair YKL032C
GO:0036294
IEA
PLAZA Integrative Orthologycellular response to decreased oxygen levels YKL032C
GO:0006281
IEA
PLAZA Integrative OrthologyDNA repair YKL032C

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IDA
IEA
Genome ProjectDNA binding
GO:0003677
IDA
Gene OntologyDNA binding1 3
GO:0008301
IDA
Genome ProjectDNA binding, bending
GO:0008301
IDA
Gene OntologyDNA binding, bending4
GO:0003684
IEA
PLAZA Integrative Orthologydamaged DNA binding YKL032C
GO:0043565
IEA
PLAZA Integrative Orthologysequence-specific DNA binding YKL032C

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IDA
IEA
Genome Projectmitochondrion
GO:0005739
Gene Ontologymitochondrion5 6
GO:0005634
IEA
Genome Projectnucleus
GO:0042645
IDA
Genome Projectmitochondrial nucleoid
GO:0042645
IDA
Gene Ontologymitochondrial nucleoid7
GO:0000262
IDA
Genome Projectmitochondrial chromosome
GO:0000262
IDA
Gene Ontologymitochondrial chromosome1
GO:0044427
IEA
PLAZA Integrative Orthologychromosomal part YKL032C
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part YKL032C
GO:0044454
IEA
PLAZA Integrative Orthologynuclear chromosome part YKL032C
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen YKL032C
GO:0000790
IEA
PLAZA Integrative Orthologynuclear chromatin YKL032C
GO:0000785
IEA
PLAZA Integrative Orthologychromatin YKL032C
GO:0000228
IEA
PLAZA Integrative Orthologynuclear chromosome YKL032C

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009071High mobility group box domain
IPR033311Intrastrand cross-link recognition protein/ARS-binding factor 2

No MapMan annotations defined for this gene.
KeggID Description
K11830TFAM, MTTFA; transcription factor A, mitochondrial
No chloroplast target sequence found.