Gene: YKL025C (Saccharomyces cerevisiae strain S288C)

Overview top

Gene Identifier
YKL025C
Transcript Identifier
YKL025C
Gene Type
Coding gene
Location
XI : 390240-392279 : negative

Family Information

Homologous gene family
HOM02SEM003381
(23 genes in 20 species)
specific family

Descriptions

gene_descr
Essential subunit of the Pan2p-Pan3p poly(A)- ribonuclease complex; poly (A) mRNA binding subunit which recruits mRNA to the complex; the Pan2p-Pan3p complex controls poly(A) tail length and regulates the stoichiometry and activity of postreplication repair complexes

Identifiers

Type Value
pidYKL025C
UniprotP36102
RefSeq_mRNANM_001179591.1
EMBLBK006944
EMBLZ28025
SGDS000001508

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
Genome ProjectmRNA processing
GO:0000289
IDA, IMP
IEA
Genome Projectnuclear-transcribed mRNA poly(A) tail shortening
GO:0000289
IDA, IMP
Gene Ontologynuclear-transcribed mRNA poly(A) tail shortening1
GO:0010606
IBA
Genome Projectpositive regulation of cytoplasmic mRNA processing body assembly
GO:0000290
IBA
Genome Projectdeadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0006301
IPI, IGI
Genome Projectpostreplication repair
GO:0006301
IPI, IGI
Gene Ontologypostreplication repair2
GO:0006281
IDA
Genome ProjectDNA repair
GO:0006281
IDA
Gene OntologyDNA repair2
GO:0006468
IEA
Genome Projectprotein phosphorylation
GO:0090503
IEA
Genome ProjectRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0000003
IEA
PLAZA Integrative Orthologyreproduction WBGene00014015

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
Genome Projectnucleotide binding
GO:0004535
IDA, IMP
Genome Projectpoly(A)-specific ribonuclease activity
GO:0004535
IDA, IMP
Gene Ontologypoly(A)-specific ribonuclease activity1
GO:0046872
IEA
Genome Projectmetal ion binding
GO:0005524
IEA
Genome ProjectATP binding
GO:0004672
IEA
Genome Projectprotein kinase activity
GO:0008143
IDA, IMP
Gene Ontologypoly(A) binding3
GO:0003723
IDA, IMP
Gene OntologyRNA binding3
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000152520

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
IBA
Genome ProjectP-body
GO:0005737
IDA
IEA
Genome Projectcytoplasm
GO:0005737
Gene Ontologycytoplasm4
GO:0031251
IDA
IEA
Genome ProjectPAN complex
GO:0031251
IDA
Gene OntologyPAN complex1
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPBC336.14c
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPAC1B1.04c
GO:0005739
IEA
PLAZA Integrative Orthologymitochondrion SPAC1B1.04c
GO:0005829
IEA
PLAZA Integrative Orthologycytosol SPAC1B1.04c
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPAC1B1.04c

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000571Zinc finger, CCCH-type
IPR000719Protein kinase domain
IPR011009Protein kinase-like domain superfamily
IPR030844PAN2-PAN3 deadenylation complex subunit PAN3

No MapMan annotations defined for this gene.
KeggID Description
K12572PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
No chloroplast target sequence found.