Gene: YHL009W-B (Saccharomyces cerevisiae strain S288C)

Overview top

Gene Identifier
YHL009W-B
Transcript Identifier
YHL009W-B
Gene Type
Coding gene
Location
VIII : 85909-91318 : positive

Family Information

Homologous gene family
HOM02SEM029864
(3 genes in 1 species)
specific family
Duplication type
Tandem duplicate

Descriptions

gene_descr
Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Identifiers

Type Value
pidYHL009W-B
UniprotP0C2J7
UniprotP47024
RefSeq_mRNANM_001184404.1
EMBLBK006934
EMBLBK006943
EMBLU11581
EMBLX67284
EMBLZ49389
SGDS000007372

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006278
IEA
Genome ProjectRNA-dependent DNA biosynthetic process
GO:0006508
IEA
Genome Projectproteolysis
GO:0006310
IEA
Genome ProjectDNA recombination
GO:0032196
IEA
Genome Projecttransposition
GO:0008152
IEA
Genome Projectmetabolic process
GO:0071897
IEA
Genome ProjectDNA biosynthetic process
GO:0090502
IEA
Genome ProjectRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090501
IEA
Genome ProjectRNA phosphodiester bond hydrolysis
GO:0090305
IEA
Genome Projectnucleic acid phosphodiester bond hydrolysis
GO:0032197
ISS
Genome Projecttransposition, RNA-mediated
GO:0032197
ISS
Gene Ontologytransposition, RNA-mediated1
GO:0015074
IEA
Genome ProjectDNA integration

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
Genome Projecttransferase activity
GO:0016787
IEA
Genome Projecthydrolase activity
GO:0003824
IEA
Genome Projectcatalytic activity
GO:0003723
ISS
IEA
Genome ProjectRNA binding
GO:0003723
ISS
Gene OntologyRNA binding1
GO:0008233
ISS
IEA
Genome Projectpeptidase activity
GO:0008233
ISS
Gene Ontologypeptidase activity1
GO:0046872
IEA
Genome Projectmetal ion binding
GO:0004518
IEA
Genome Projectnuclease activity
GO:0005524
IEA
Genome ProjectATP binding
GO:0000166
IEA
Genome Projectnucleotide binding
GO:0003677
IEA
Genome ProjectDNA binding
GO:0004519
IEA
Genome Projectendonuclease activity
GO:0003887
ISS
IEA
Genome ProjectDNA-directed DNA polymerase activity
GO:0003887
ISS
Gene OntologyDNA-directed DNA polymerase activity1
GO:0003676
IEA
Genome Projectnucleic acid binding
GO:0004523
IEA
Genome ProjectRNA-DNA hybrid ribonuclease activity
GO:0003964
ISS
IEA
Genome ProjectRNA-directed DNA polymerase activity
GO:0003964
ISS
Gene OntologyRNA-directed DNA polymerase activity1
GO:0004540
ISS
Genome Projectribonuclease activity
GO:0004540
ISS
Gene Ontologyribonuclease activity1
GO:0016779
IEA
Genome Projectnucleotidyltransferase activity
GO:0004190
IEA
Genome Projectaspartic-type endopeptidase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
IEA
Genome Projectnucleus
GO:0005634
IDA
Gene Ontologynucleus2
GO:0000943
ISS
Genome Projectretrotransposon nucleocapsid
GO:0000943
ISS
Gene Ontologyretrotransposon nucleocapsid1
GO:0005737
IEA
Genome Projectcytoplasm
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part YJL113W
GO:0005739
IEA
PLAZA Integrative Orthologymitochondrion YJL113W

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001584Integrase, catalytic core
IPR012337Ribonuclease H-like superfamily
IPR013103Reverse transcriptase, RNA-dependent DNA polymerase

No MapMan annotations defined for this gene.
No Kegg annotations defined for this gene.
No chloroplast target sequence found.