Gene: Sro42_g025490 (Seminavis robusta)

Overview top

Gene Identifier
Sro42_g025490
Transcript Identifier
Sro42_g025490.1
Gene Type
Coding gene
Location
Sro_contig42 : 35822-36187 : positive

Family Information

Homologous gene family
HOM02SEM000623
(66 genes in 19 species)
specific family

Descriptions

eggnog_description
Ribonuclease B OB domain
annomine_description
Probable cold shock protein A

Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0071103
IEA
PLAZA Integrative OrthologyDNA conformation change AT4G38680
GO:0055114
IEA
PLAZA Integrative Orthologyoxidation-reduction process AT4G38680
GO:0051276
IEA
PLAZA Integrative Orthologychromosome organization AT4G38680
GO:0009737
IEA
PLAZA Integrative Orthologyresponse to abscisic acid AT4G38680
GO:0001101
IEA
PLAZA Integrative Orthologyresponse to acid chemical AT4G38680
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process AT2G17870
GO:0000003
IEA
PLAZA Integrative Orthologyreproduction AT4G38680
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress AT4G38680
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization AT4G38680
GO:0043457
IEA
PLAZA Integrative Orthologyregulation of cellular respiration AT4G38680
GO:0048827
IEA
PLAZA Integrative Orthologyphyllome development AT4G38680
GO:0048589
IEA
PLAZA Integrative Orthologydevelopmental growth AT2G17870
GO:0022414
IEA
PLAZA Integrative Orthologyreproductive process AT4G38680
GO:0009269
IEA
PLAZA Integrative Orthologyresponse to desiccation AT4G38680
GO:0015980
IEA
PLAZA Integrative Orthologyenergy derivation by oxidation of organic compounds AT4G38680
GO:0009266
IEA
PLAZA Integrative Orthologyresponse to temperature stimulus AT4G38680
GO:0090567
IEA
PLAZA Integrative Orthologyreproductive shoot system development AT4G38680
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process AT4G38680
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus AT4G38680
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process AT4G38680
GO:0010035
IEA
PLAZA Integrative Orthologyresponse to inorganic substance AT4G38680
GO:0033993
IEA
PLAZA Integrative Orthologyresponse to lipid AT4G38680
GO:0097305
IEA
PLAZA Integrative Orthologyresponse to alcohol AT4G38680
GO:0032508
IEA
PLAZA Integrative OrthologyDNA duplex unwinding AT4G38680
GO:0099402
IEA
PLAZA Integrative Orthologyplant organ development AT4G38680
GO:0048466
IEA
PLAZA Integrative Orthologyandroecium development AT4G38680
GO:0032989
IEA
PLAZA Integrative Orthologycellular component morphogenesis AT2G17870
GO:0009409
IEA
PLAZA Integrative Orthologyresponse to cold AT4G38680
GO:0009414
IEA
PLAZA Integrative Orthologyresponse to water deprivation AT4G38680
GO:0009415
IEA
PLAZA Integrative Orthologyresponse to water AT4G38680
GO:0009653
IEA
PLAZA Integrative Orthologyanatomical structure morphogenesis AT2G17870
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development AT4G38680
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development AT4G38680
GO:0032392
IEA
PLAZA Integrative OrthologyDNA geometric change AT4G38680
GO:0016049
IEA
PLAZA Integrative Orthologycell growth AT2G17870
GO:0010228
IEA
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT4G38680
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis AT4G38680
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization AT4G38680
GO:0009719
IEA
PLAZA Integrative Orthologyresponse to endogenous stimulus AT4G38680
GO:0048731
IEA
PLAZA Integrative Orthologysystem development AT4G38680
GO:0040007
IEA
PLAZA Integrative Orthologygrowth AT2G17870
GO:0009725
IEA
PLAZA Integrative Orthologyresponse to hormone AT4G38680
GO:0045333
IEA
PLAZA Integrative Orthologycellular respiration AT4G38680
GO:0042221
IEA
PLAZA Integrative Orthologyresponse to chemical AT4G38680
GO:0000902
IEA
PLAZA Integrative Orthologycell morphogenesis AT2G17870
GO:0048608
IEA
PLAZA Integrative Orthologyreproductive structure development AT4G38680
GO:0006091
IEA
PLAZA Integrative Orthologygeneration of precursor metabolites and energy AT4G38680
GO:0010033
IEA
PLAZA Integrative Orthologyresponse to organic substance AT4G38680
GO:0010154
IEA
PLAZA Integrative Orthologyfruit development AT4G38680
GO:0048443
IEA
PLAZA Integrative Orthologystamen development AT4G38680
GO:0009908
IEA
PLAZA Integrative Orthologyflower development AT4G38680
GO:0048367
IEA
PLAZA Integrative Orthologyshoot system development AT4G38680
GO:0009826
IEA
PLAZA Integrative Orthologyunidimensional cell growth AT2G17870
GO:0009628
IEA
PLAZA Integrative Orthologyresponse to abiotic stimulus AT4G38680
GO:0003006
IEA
PLAZA Integrative Orthologydevelopmental process involved in reproduction AT4G38680
GO:0061458
IEA
PLAZA Integrative Orthologyreproductive system development AT4G38680
GO:1901700
IEA
PLAZA Integrative Orthologyresponse to oxygen-containing compound AT4G38680
GO:0043467
IEA
PLAZA Integrative Orthologyregulation of generation of precursor metabolites and energy AT4G38680
GO:0009631
IEA
PLAZA Integrative Orthologycold acclimation AT4G38680
GO:0048437
IEA
PLAZA Integrative Orthologyfloral organ development AT4G38680
GO:0048316
IEA
PLAZA Integrative Orthologyseed development AT4G38680
GO:0048438
IEA
PLAZA Integrative Orthologyfloral whorl development AT4G38680
GO:0060560
IEA
PLAZA Integrative Orthologydevelopmental growth involved in morphogenesis AT2G17870
GO:0009791
IEA
PLAZA Integrative Orthologypost-embryonic development AT4G38680
GO:0009793
IEA
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT2G21060
GO:0009790
IEA
PLAZA Integrative Orthologyembryo development AT2G21060

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
IEA
InterProDNA binding
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding AT2G17870
GO:0003729
IEA
PLAZA Integrative OrthologymRNA binding AT4G38680
GO:0003723
IEA
PLAZA Integrative OrthologyRNA binding AT4G38680
GO:0003697
IEA
PLAZA Integrative Orthologysingle-stranded DNA binding AT4G38680
GO:0003690
IEA
PLAZA Integrative Orthologydouble-stranded DNA binding AT4G38680

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071944
IEA
PLAZA Integrative Orthologycell periphery AT4G38680
GO:0016020
IEA
PLAZA Integrative Orthologymembrane AT4G38680
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen AT4G38680
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm AT4G38680
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular AT4G38680
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part AT4G38680
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part AT4G38680
GO:0044464
IEA
PLAZA Integrative Orthologycell part AT4G38680
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part AT4G38680
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen AT4G38680
GO:0005730
IEA
PLAZA Integrative Orthologynucleolus AT4G38680
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen AT4G38680
GO:0005634
IEA
PLAZA Integrative Orthologynucleus AT4G38680
GO:0005886
IEA
PLAZA Integrative Orthologyplasma membrane AT4G38680
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part AT4G38680
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part AT4G38680
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle AT4G38680
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen AT4G38680
GO:0005829
IEA
PLAZA Integrative Orthologycytosol AT4G38680
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle AT4G38680
GO:0005623
IEA
PLAZA Integrative Orthologycell AT4G38680
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle AT4G38680
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle AT4G38680
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle AT4G38680
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle AT4G38680

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR002059Cold-shock protein, DNA-binding
IPR011129Cold shock domain
IPR012340Nucleic acid-binding, OB-fold

No MapMan annotations defined for this gene.
KeggID Description
K09250CNBP; cellular nucleic acid-binding protein
K18754LIN28; protein lin-28
Cleavage position Sequence
21 APTAAFLLPQPRKCTSTQLFGEIFK