Gene: Sro2468_g328590 (Seminavis robusta)

Overview top

Gene Identifier
Sro2468_g328590
Transcript Identifier
Sro2468_g328590.1
Gene Type
Coding gene
Location
Sro_contig2468 : 10638-14358 : positive

Family Information

Homologous gene family
HOM02SEM002033
(32 genes in 22 species)
specific family

Descriptions

eggnog_description
SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase
annomine_description
protein ligase SHPRH

Identifiers

Type Value

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051716
IEA
PLAZA Integrative Orthologycellular response to stimulus YLR247C
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation FBgn0035689
GO:0048731
IEA
PLAZA Integrative Orthologysystem development FBgn0035689
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process FBgn0035689
GO:0006974
IEA
PLAZA Integrative Orthologycellular response to DNA damage stimulus YLR247C
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress YLR247C
GO:0006259
IEA
PLAZA Integrative OrthologyDNA metabolic process YLR247C
GO:0006310
IEA
PLAZA Integrative OrthologyDNA recombination YLR247C
GO:0000724
IEA
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination YLR247C
GO:0000725
IEA
PLAZA Integrative Orthologyrecombinational repair YLR247C
GO:0000726
IEA
PLAZA Integrative Orthologynon-recombinational repair YLR247C
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process YLR247C
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process FBgn0035689
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus YLR247C
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process FBgn0035689
GO:0006302
IEA
PLAZA Integrative Orthologydouble-strand break repair YLR247C
GO:0033554
IEA
PLAZA Integrative Orthologycellular response to stress YLR247C
GO:0006303
IEA
PLAZA Integrative Orthologydouble-strand break repair via nonhomologous end joining YLR247C
GO:0022008
IEA
EggNOGmapperneurogenesis
GO:0045003
IEA
PLAZA Integrative Orthologydouble-strand break repair via synthesis-dependent strand annealing YLR247C
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development FBgn0035689
GO:0007399
IEA
PLAZA Integrative Orthologynervous system development FBgn0035689
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development FBgn0035689
GO:0006281
IEA
EggNOGmapperDNA repair
GO:0009207
IEA
EggNOGmapperpurine ribonucleoside triphosphate catabolic process
GO:0009166
IEA
EggNOGmappernucleotide catabolic process
GO:0009169
IEA
EggNOGmapperpurine ribonucleoside monophosphate catabolic process
GO:0006195
IEA
EggNOGmapperpurine nucleotide catabolic process
GO:0009150
IEA
EggNOGmapperpurine ribonucleotide metabolic process
GO:0046034
IEA
EggNOGmapperATP metabolic process
GO:0046130
IEA
EggNOGmapperpurine ribonucleoside catabolic process
GO:0016567
IEA
EggNOGmapperprotein ubiquitination
GO:0009154
IEA
EggNOGmapperpurine ribonucleotide catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
PLAZA Integrative Orthologytransferase activity YLR247C
GO:0004842
IEA
EggNOGmapperubiquitin-protein transferase activity
GO:0140096
IEA
PLAZA Integrative Orthologycatalytic activity, acting on a protein YLR247C
GO:0019787
IEA
PLAZA Integrative Orthologyubiquitin-like protein transferase activity YLR247C
GO:0005524
IEA
InterProATP binding
GO:0016881
IEA
EggNOGmapperacid-amino acid ligase activity
GO:0008270
IEA
EggNOGmapperzinc ion binding
GO:0008094
IEA
EggNOGmapperDNA-dependent ATPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
PLAZA Integrative Orthologymitochondrion YLR247C
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm YLR247C
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part YLR247C
GO:0000790
IEA
EggNOGmappernuclear chromatin

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR038718SNF2-like, N-terminal domain superfamily
IPR000330SNF2-related, N-terminal domain
IPR001965Zinc finger, PHD-type
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase

No MapMan annotations defined for this gene.
KeggID Description
K15710SHPRH; E3 ubiquitin-protein ligase SHPRH [EC:3.6.4.- 2.3.2.27]
No chloroplast target sequence found.