Gene: Sro2322_g323260 (Seminavis robusta)

Overview top

Gene Identifier
Sro2322_g323260
Transcript Identifier
Sro2322_g323260.1
Gene Type
Coding gene
Location
Sro_contig2322 : 5716-6691 : negative

Family Information

Homologous gene family
HOM02SEM000623
(66 genes in 19 species)
specific family

Descriptions

eggnog_description
Y box binding protein
annomine_description
lin-28 homolog A

Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009791
IEA
PLAZA Integrative Orthologypost-embryonic development AT4G38680
GO:0043467
IEA
PLAZA Integrative Orthologyregulation of generation of precursor metabolites and energy AT4G38680
GO:0061458
IEA
PLAZA Integrative Orthologyreproductive system development AT4G38680
GO:0050793
IEA
PLAZA Integrative Orthologyregulation of developmental process WBGene00003014
GO:0048367
IEA
EggNOGmappershoot system development
GO:0071495
IEA
PLAZA Integrative Orthologycellular response to endogenous stimulus FBgn0035626
GO:0071375
IEA
PLAZA Integrative Orthologycellular response to peptide hormone stimulus FBgn0035626
GO:0001708
IEA
PLAZA Integrative Orthologycell fate specification WBGene00003014
GO:0046628
IEA
PLAZA Integrative Orthologypositive regulation of insulin receptor signaling pathway FBgn0035626
GO:0006970
IEA
PLAZA Integrative Orthologyresponse to osmotic stress AT4G36020
GO:0046626
IEA
PLAZA Integrative Orthologyregulation of insulin receptor signaling pathway FBgn0035626
GO:0023056
IEA
PLAZA Integrative Orthologypositive regulation of signaling FBgn0035626
GO:0023051
IEA
PLAZA Integrative Orthologyregulation of signaling FBgn0035626
GO:0009651
IEA
EggNOGmapperresponse to salt stress
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process ENSG00000131914
GO:0009891
IEA
PLAZA Integrative Orthologypositive regulation of biosynthetic process ENSG00000131914
GO:0060147
IEA
PLAZA Integrative Orthologyregulation of posttranscriptional gene silencing WBGene00003014
GO:0009415
IEA
PLAZA Integrative Orthologyresponse to water AT4G36020
GO:0060149
IEA
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing WBGene00003014
GO:0009414
IEA
PLAZA Integrative Orthologyresponse to water deprivation AT4G36020
GO:0051301
IEA
PLAZA Integrative Orthologycell division FBgn0035626
GO:0009409
IEA
PLAZA Integrative Orthologyresponse to cold AT4G36020
GO:0035019
IEA
PLAZA Integrative Orthologysomatic stem cell population maintenance ENSG00000131914
GO:0033993
IEA
PLAZA Integrative Orthologyresponse to lipid AT4G38680
GO:0090567
IEA
PLAZA Integrative Orthologyreproductive shoot system development AT4G38680
GO:1903799
IEA
PLAZA Integrative Orthologynegative regulation of production of miRNAs involved in gene silencing by miRNA WBGene00003014
GO:1903798
IEA
PLAZA Integrative Orthologyregulation of production of miRNAs involved in gene silencing by miRNA WBGene00003014
GO:0048827
IEA
EggNOGmapperphyllome development
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress AT4G36020
GO:0031328
IEA
PLAZA Integrative Orthologypositive regulation of cellular biosynthetic process ENSG00000131914
GO:0010647
IEA
PLAZA Integrative Orthologypositive regulation of cell communication FBgn0035626
GO:0098727
IEA
PLAZA Integrative Orthologymaintenance of cell number ENSG00000131914
GO:0055114
IEA
PLAZA Integrative Orthologyoxidation-reduction process AT4G38680
GO:0010646
IEA
PLAZA Integrative Orthologyregulation of cell communication FBgn0035626
GO:0098724
IEA
PLAZA Integrative Orthologysymmetric stem cell division FBgn0035626
GO:0098725
IEA
PLAZA Integrative Orthologysymmetric cell division FBgn0035626
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process ENSG00000131914
GO:0031324
IEA
PLAZA Integrative Orthologynegative regulation of cellular metabolic process WBGene00003014
GO:0007292
IEA
PLAZA Integrative Orthologyfemale gamete generation FBgn0035626
GO:0045727
IEA
PLAZA Integrative Orthologypositive regulation of translation ENSG00000131914
GO:0040034
IEA
PLAZA Integrative Orthologyregulation of development, heterochronic WBGene00003014
GO:0048438
IEA
PLAZA Integrative Orthologyfloral whorl development AT4G38680
GO:0051172
IEA
PLAZA Integrative Orthologynegative regulation of nitrogen compound metabolic process WBGene00003014
GO:0048316
IEA
EggNOGmapperseed development
GO:0048437
IEA
PLAZA Integrative Orthologyfloral organ development AT4G38680
GO:0051173
IEA
PLAZA Integrative Orthologypositive regulation of nitrogen compound metabolic process ENSG00000131914
GO:0003006
IEA
PLAZA Integrative Orthologydevelopmental process involved in reproduction AT4G38680
GO:0009908
IEA
PLAZA Integrative Orthologyflower development AT4G38680
GO:0048443
IEA
EggNOGmapperstamen development
GO:0006518
IEA
PLAZA Integrative Orthologypeptide metabolic process ENSG00000131914
GO:0010453
IEA
PLAZA Integrative Orthologyregulation of cell fate commitment WBGene00003014
GO:0070920
IEA
PLAZA Integrative Orthologyregulation of production of small RNA involved in gene silencing by RNA WBGene00003014
GO:0006091
IEA
PLAZA Integrative Orthologygeneration of precursor metabolites and energy AT4G38680
GO:0019827
IEA
PLAZA Integrative Orthologystem cell population maintenance ENSG00000131914
GO:0035194
IEA
PLAZA Integrative Orthologyposttranscriptional gene silencing by RNA ENSG00000131914
GO:0035195
IEA
PLAZA Integrative Orthologygene silencing by miRNA ENSG00000131914
GO:0034661
IEA
PLAZA Integrative OrthologyncRNA catabolic process ENSG00000131914
GO:0035196
IEA
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA ENSG00000131914
GO:0034660
IEA
PLAZA Integrative OrthologyncRNA metabolic process ENSG00000131914
GO:0070918
IEA
PLAZA Integrative Orthologyproduction of small RNA involved in gene silencing by RNA ENSG00000131914
GO:0042221
IEA
PLAZA Integrative Orthologyresponse to chemical AT4G36020
GO:0043434
IEA
PLAZA Integrative Orthologyresponse to peptide hormone FBgn0035626
GO:0006412
IEA
PLAZA Integrative Orthologytranslation ENSG00000131914
GO:0010228
IEA
EggNOGmappervegetative to reproductive phase transition of meristem
GO:0016441
IEA
PLAZA Integrative Orthologyposttranscriptional gene silencing ENSG00000131914
GO:0019953
IEA
PLAZA Integrative Orthologysexual reproduction FBgn0035626
GO:0010587
IEA
PLAZA Integrative OrthologymiRNA catabolic process ENSG00000131914
GO:0010586
IEA
PLAZA Integrative OrthologymiRNA metabolic process ENSG00000131914
GO:1901564
IEA
PLAZA Integrative Orthologyorganonitrogen compound metabolic process ENSG00000131914
GO:0007276
IEA
PLAZA Integrative Orthologygamete generation FBgn0035626
GO:1901566
IEA
PLAZA Integrative Orthologyorganonitrogen compound biosynthetic process ENSG00000131914
GO:0048584
IEA
PLAZA Integrative Orthologypositive regulation of response to stimulus FBgn0035626
GO:0048583
IEA
PLAZA Integrative Orthologyregulation of response to stimulus FBgn0035626
GO:0048466
IEA
EggNOGmapperandroecium development
GO:0010557
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule biosynthetic process ENSG00000131914
GO:0007281
IEA
PLAZA Integrative Orthologygerm cell development FBgn0035626
GO:0022414
IEA
PLAZA Integrative Orthologyreproductive process AT4G38680
GO:0007169
IEA
PLAZA Integrative Orthologytransmembrane receptor protein tyrosine kinase signaling pathway FBgn0035626
GO:0007166
IEA
PLAZA Integrative Orthologycell surface receptor signaling pathway FBgn0035626
GO:1901699
IEA
PLAZA Integrative Orthologycellular response to nitrogen compound FBgn0035626
GO:0007167
IEA
PLAZA Integrative Orthologyenzyme linked receptor protein signaling pathway FBgn0035626
GO:1901698
IEA
PLAZA Integrative Orthologyresponse to nitrogen compound FBgn0035626
GO:0048468
IEA
PLAZA Integrative Orthologycell development FBgn0035626
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization AT4G36020
GO:0043457
IEA
EggNOGmapperregulation of cellular respiration
GO:0042127
IEA
PLAZA Integrative Orthologyregulation of cell proliferation FBgn0035626
GO:0022412
IEA
PLAZA Integrative Orthologycellular process involved in reproduction in multicellular organism FBgn0035626
GO:0048477
IEA
PLAZA Integrative Orthologyoogenesis FBgn0035626
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation WBGene00003014
GO:0071103
IEA
PLAZA Integrative OrthologyDNA conformation change AT4G36020
GO:0034470
IEA
PLAZA Integrative OrthologyncRNA processing ENSG00000131914
GO:0042659
IEA
PLAZA Integrative Orthologyregulation of cell fate specification WBGene00003014
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process ENSG00000131914
GO:0051246
IEA
PLAZA Integrative Orthologyregulation of protein metabolic process ENSG00000131914
GO:0051247
IEA
PLAZA Integrative Orthologypositive regulation of protein metabolic process ENSG00000131914
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process ENSG00000131914
GO:2000635
IEA
PLAZA Integrative Orthologynegative regulation of primary miRNA processing WBGene00003014
GO:2000631
IEA
PLAZA Integrative Orthologyregulation of pre-miRNA processing FBgn0035626
GO:2000632
IEA
PLAZA Integrative Orthologynegative regulation of pre-miRNA processing FBgn0035626
GO:2000634
IEA
PLAZA Integrative Orthologyregulation of primary miRNA processing WBGene00003014
GO:0071417
IEA
PLAZA Integrative Orthologycellular response to organonitrogen compound FBgn0035626
GO:0010154
IEA
EggNOGmapperfruit development
GO:0010033
IEA
PLAZA Integrative Orthologyresponse to organic substance AT4G38680
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process WBGene00003014
GO:0009725
IEA
PLAZA Integrative Orthologyresponse to hormone AT4G38680
GO:0009967
IEA
PLAZA Integrative Orthologypositive regulation of signal transduction FBgn0035626
GO:0045934
IEA
PLAZA Integrative Orthologynegative regulation of nucleobase-containing compound metabolic process WBGene00003014
GO:0009966
IEA
PLAZA Integrative Orthologyregulation of signal transduction FBgn0035626
GO:2000767
IEA
PLAZA Integrative Orthologypositive regulation of cytoplasmic translation ENSG00000131914
GO:0051253
IEA
PLAZA Integrative Orthologynegative regulation of RNA metabolic process WBGene00003014
GO:2000648
IEA
PLAZA Integrative Orthologypositive regulation of stem cell proliferation FBgn0035626
GO:0009719
IEA
PLAZA Integrative Orthologyresponse to endogenous stimulus AT4G38680
GO:2000765
IEA
PLAZA Integrative Orthologyregulation of cytoplasmic translation ENSG00000131914
GO:0032270
IEA
PLAZA Integrative Orthologypositive regulation of cellular protein metabolic process ENSG00000131914
GO:0008283
IEA
PLAZA Integrative Orthologycell proliferation FBgn0035626
GO:0032392
IEA
PLAZA Integrative OrthologyDNA geometric change AT4G36020
GO:0008286
IEA
PLAZA Integrative Orthologyinsulin receptor signaling pathway FBgn0035626
GO:0002181
IEA
PLAZA Integrative Orthologycytoplasmic translation ENSG00000131914
GO:0008284
IEA
PLAZA Integrative Orthologypositive regulation of cell proliferation FBgn0035626
GO:0072091
IEA
PLAZA Integrative Orthologyregulation of stem cell proliferation FBgn0035626
GO:0006417
IEA
PLAZA Integrative Orthologyregulation of translation ENSG00000131914
GO:0071310
IEA
PLAZA Integrative Orthologycellular response to organic substance FBgn0035626
GO:0099402
IEA
PLAZA Integrative Orthologyplant organ development AT4G38680
GO:0072089
IEA
PLAZA Integrative Orthologystem cell proliferation FBgn0035626
GO:0032268
IEA
PLAZA Integrative Orthologyregulation of cellular protein metabolic process ENSG00000131914
GO:0051704
IEA
PLAZA Integrative Orthologymulti-organism process FBgn0035626
GO:0016458
IEA
PLAZA Integrative Orthologygene silencing ENSG00000131914
GO:0031050
IEA
PLAZA Integrative OrthologydsRNA processing ENSG00000131914
GO:0009266
IEA
PLAZA Integrative Orthologyresponse to temperature stimulus AT4G36020
GO:0031053
IEA
PLAZA Integrative Orthologyprimary miRNA processing WBGene00003014
GO:0031054
IEA
PLAZA Integrative Orthologypre-miRNA processing ENSG00000131914
GO:1901653
IEA
PLAZA Integrative Orthologycellular response to peptide FBgn0035626
GO:0009269
IEA
EggNOGmapperresponse to desiccation
GO:1901652
IEA
PLAZA Integrative Orthologyresponse to peptide FBgn0035626
GO:0040029
IEA
PLAZA Integrative Orthologyregulation of gene expression, epigenetic ENSG00000131914
GO:0051276
IEA
PLAZA Integrative Orthologychromosome organization AT4G36020
GO:0045165
IEA
PLAZA Integrative Orthologycell fate commitment WBGene00003014
GO:0031047
IEA
PLAZA Integrative Orthologygene silencing by RNA ENSG00000131914
GO:0010243
IEA
PLAZA Integrative Orthologyresponse to organonitrogen compound FBgn0035626
GO:0060965
IEA
PLAZA Integrative Orthologynegative regulation of gene silencing by miRNA WBGene00003014
GO:0060966
IEA
PLAZA Integrative Orthologyregulation of gene silencing by RNA WBGene00003014
GO:0009631
IEA
EggNOGmappercold acclimation
GO:0060967
IEA
PLAZA Integrative Orthologynegative regulation of gene silencing by RNA WBGene00003014
GO:0060968
IEA
PLAZA Integrative Orthologyregulation of gene silencing WBGene00003014
GO:1901701
IEA
PLAZA Integrative Orthologycellular response to oxygen-containing compound FBgn0035626
GO:1901700
IEA
PLAZA Integrative Orthologyresponse to oxygen-containing compound AT4G36020
GO:0060964
IEA
PLAZA Integrative Orthologyregulation of gene silencing by miRNA WBGene00003014
GO:0009628
IEA
PLAZA Integrative Orthologyresponse to abiotic stimulus AT4G36020
GO:0060969
IEA
PLAZA Integrative Orthologynegative regulation of gene silencing WBGene00003014
GO:0017145
IEA
PLAZA Integrative Orthologystem cell division FBgn0035626
GO:0070887
IEA
PLAZA Integrative Orthologycellular response to chemical stimulus FBgn0035626
GO:0048609
IEA
PLAZA Integrative Orthologymulticellular organismal reproductive process FBgn0035626
GO:0048608
IEA
PLAZA Integrative Orthologyreproductive structure development AT4G38680
GO:0045333
IEA
PLAZA Integrative Orthologycellular respiration AT4G38680
GO:0010628
IEA
PLAZA Integrative Orthologypositive regulation of gene expression ENSG00000131914
GO:0043043
IEA
PLAZA Integrative Orthologypeptide biosynthetic process ENSG00000131914
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization AT4G36020
GO:0010501
IEA
EggNOGmapperRNA secondary structure unwinding
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis AT4G36020
GO:0032870
IEA
PLAZA Integrative Orthologycellular response to hormone stimulus FBgn0035626
GO:0043604
IEA
PLAZA Integrative Orthologyamide biosynthetic process ENSG00000131914
GO:0019538
IEA
PLAZA Integrative Orthologyprotein metabolic process ENSG00000131914
GO:0034250
IEA
PLAZA Integrative Orthologypositive regulation of cellular amide metabolic process ENSG00000131914
GO:0043603
IEA
PLAZA Integrative Orthologycellular amide metabolic process ENSG00000131914
GO:1900076
IEA
PLAZA Integrative Orthologyregulation of cellular response to insulin stimulus FBgn0035626
GO:1900078
IEA
PLAZA Integrative Orthologypositive regulation of cellular response to insulin stimulus FBgn0035626
GO:0032869
IEA
PLAZA Integrative Orthologycellular response to insulin stimulus FBgn0035626
GO:0032504
IEA
PLAZA Integrative Orthologymulticellular organism reproduction FBgn0035626
GO:0007549
IEA
PLAZA Integrative Orthologydosage compensation WBGene00003014
GO:0032868
IEA
PLAZA Integrative Orthologyresponse to insulin FBgn0035626
GO:0045595
IEA
PLAZA Integrative Orthologyregulation of cell differentiation WBGene00003014
GO:0032508
IEA
EggNOGmapperDNA duplex unwinding
GO:0034248
IEA
PLAZA Integrative Orthologyregulation of cellular amide metabolic process ENSG00000131914
GO:0097305
IEA
PLAZA Integrative Orthologyresponse to alcohol AT4G38680
GO:0010035
IEA
PLAZA Integrative Orthologyresponse to inorganic substance AT4G36020
GO:0044703
IEA
PLAZA Integrative Orthologymulti-organism reproductive process FBgn0035626
GO:0015980
IEA
PLAZA Integrative Orthologyenergy derivation by oxidation of organic compounds AT4G38680
GO:0044267
IEA
PLAZA Integrative Orthologycellular protein metabolic process ENSG00000131914
GO:0000003
IEA
PLAZA Integrative Orthologyreproduction AT4G38680
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process WBGene00003014
GO:0001101
IEA
PLAZA Integrative Orthologyresponse to acid chemical AT4G36020
GO:0009737
IEA
EggNOGmapperresponse to abscisic acid
GO:0010604
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule metabolic process ENSG00000131914
GO:0048569
IEA
EggNOGmapperpost-embryonic animal organ development
GO:0019722
IEA
EggNOGmappercalcium-mediated signaling
GO:0006398
IEA
EggNOGmappermRNA 3'-end processing by stem-loop binding and cleavage
GO:0043488
IEA
EggNOGmapperregulation of mRNA stability
GO:0009790
IEA
EggNOGmapperembryo development
GO:0006259
IEA
EggNOGmapperDNA metabolic process
GO:0010608
IEA
EggNOGmapperposttranscriptional regulation of gene expression

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
IEA
InterProDNA binding
GO:0003690
IEA
EggNOGmapperdouble-stranded DNA binding
GO:0003697
IEA
EggNOGmappersingle-stranded DNA binding
GO:0043021
IEA
PLAZA Integrative Orthologyribonucleoprotein complex binding ENSG00000131914
GO:0044877
IEA
PLAZA Integrative Orthologyprotein-containing complex binding ENSG00000131914
GO:0003730
IEA
EggNOGmappermRNA 3'-UTR binding
GO:0003723
IEA
PLAZA Integrative OrthologyRNA binding AT4G36020
GO:0003729
IEA
PLAZA Integrative OrthologymRNA binding AT4G36020
GO:1990715
IEA
PLAZA Integrative OrthologymRNA CDS binding WBGene00003014
GO:0070883
IEA
PLAZA Integrative Orthologypre-miRNA binding WBGene00003014
GO:0070878
IEA
PLAZA Integrative Orthologyprimary miRNA binding WBGene00003014
GO:1905538
IEA
PLAZA Integrative Orthologypolysome binding ENSG00000131914
GO:0019902
IEA
EggNOGmapperphosphatase binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle AT4G38680
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle AT4G38680
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen AT4G38680
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part AT4G38680
GO:0005886
IEA
EggNOGmapperplasma membrane
GO:0005634
IEA
PLAZA Integrative Orthologynucleus AT4G38680
GO:0005730
IEA
EggNOGmappernucleolus
GO:0005844
IEA
PLAZA Integrative Orthologypolysome ENSG00000131914
GO:0071944
IEA
EggNOGmappercell periphery
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part AT4G38680
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part AT4G38680
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen AT4G38680
GO:0031981
IEA
EggNOGmappernuclear lumen
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen AT4G38680
GO:0010494
IEA
PLAZA Integrative Orthologycytoplasmic stress granule ENSG00000131914
GO:0000932
IEA
EggNOGmapperP-body
GO:0005829
IEA
EggNOGmappercytosol
GO:0016020
IEA
PLAZA Integrative Orthologymembrane AT4G38680
GO:0060293
IEA
EggNOGmappergerm plasm
GO:0043186
IEA
EggNOGmapperP granule

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR002059Cold-shock protein, DNA-binding
IPR019844Cold-shock conserved site
IPR011129Cold shock domain
IPR012340Nucleic acid-binding, OB-fold

No MapMan annotations defined for this gene.
KeggID Description
K15441TAD2, ADAT2; tRNA-specific adenosine deaminase 2 [EC:3.5.4.-]
K09250CNBP; cellular nucleic acid-binding protein
K18754LIN28; protein lin-28
No chloroplast target sequence found.