Gene: Pp3c5_25690 (Physcomitrella patens)

Overview top

Gene Identifier
Pp3c5_25690
Transcript Identifier
Pp3c5_25690V3.1
Gene Type
Coding gene
Location
Chr05 : 18284818-18292015 : positive

Family Information

Homologous gene family
HOM02SEM000130
(193 genes in 26 species)
specific family

Descriptions

Identifiers

Type Value
namePp3c5_25690V3.1
tidPAC:32955761
aliasPp1s154_12V6
aliasPhypa_11930
aliasPhpat.005G094100
pacid32955761

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:0016579
IEA
InterProprotein deubiquitination
GO:0051239
IEA
PLAZA Integrative Orthologyregulation of multicellular organismal process FBgn0260936
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process YNL186W
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process YNL186W
GO:0009617
IEA
PLAZA Integrative Orthologyresponse to bacterium FBgn0260936
GO:0000003
IEA
PLAZA Integrative Orthologyreproduction AT1G17110
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression YNL186W
GO:0048731
IEA
PLAZA Integrative Orthologysystem development AT1G17110
GO:0010507
IEA
PLAZA Integrative Orthologynegative regulation of autophagy FBgn0260936
GO:0010506
IEA
PLAZA Integrative Orthologyregulation of autophagy FBgn0260936
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization YNL186W
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis YNL186W
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process YNL186W
GO:0033044
IEA
PLAZA Integrative Orthologyregulation of chromosome organization FBgn0260936
GO:0033043
IEA
PLAZA Integrative Orthologyregulation of organelle organization FBgn0260936
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development AT1G17110
GO:0009059
IEA
PLAZA Integrative Orthologymacromolecule biosynthetic process YNL186W
GO:0006342
IEA
PLAZA Integrative Orthologychromatin silencing YNL186W
GO:0009058
IEA
PLAZA Integrative Orthologybiosynthetic process YNL186W
GO:0006348
IEA
PLAZA Integrative Orthologychromatin silencing at telomere YNL186W
GO:0009607
IEA
PLAZA Integrative Orthologyresponse to biotic stimulus FBgn0260936
GO:0009605
IEA
PLAZA Integrative Orthologyresponse to external stimulus FBgn0260936
GO:0097549
IEA
PLAZA Integrative Orthologychromatin organization involved in negative regulation of transcription YNL186W
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process AT1G17110
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process AT1G17110
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated YNL186W
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated YNL186W
GO:0098542
IEA
PLAZA Integrative Orthologydefense response to other organism FBgn0260936
GO:0042742
IEA
PLAZA Integrative Orthologydefense response to bacterium FBgn0260936
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process YNL186W
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process YNL186W
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process YNL186W
GO:0042981
IEA
PLAZA Integrative Orthologyregulation of apoptotic process FBgn0260936
GO:0048608
IEA
PLAZA Integrative Orthologyreproductive structure development AT1G17110
GO:0006915
IEA
PLAZA Integrative Orthologyapoptotic process FBgn0260936
GO:0006914
IEA
PLAZA Integrative Orthologyautophagy FBgn0260936
GO:0009628
IEA
PLAZA Integrative Orthologyresponse to abiotic stimulus AT4G24560
GO:0002683
IEA
PLAZA Integrative Orthologynegative regulation of immune system process FBgn0260936
GO:0002682
IEA
PLAZA Integrative Orthologyregulation of immune system process FBgn0260936
GO:0060968
IEA
PLAZA Integrative Orthologyregulation of gene silencing FBgn0260936
GO:0051276
IEA
PLAZA Integrative Orthologychromosome organization YNL186W
GO:0040029
IEA
PLAZA Integrative Orthologyregulation of gene expression, epigenetic YNL186W
GO:0016458
IEA
PLAZA Integrative Orthologygene silencing YNL186W
GO:0016236
IEA
PLAZA Integrative Orthologymacroautophagy FBgn0260936
GO:0099402
IEA
PLAZA Integrative Orthologyplant organ development AT1G17110
GO:0051704
IEA
PLAZA Integrative Orthologymulti-organism process FBgn0260936
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process YNL186W
GO:0045824
IEA
PLAZA Integrative Orthologynegative regulation of innate immune response FBgn0260936
GO:0051707
IEA
PLAZA Integrative Orthologyresponse to other organism FBgn0260936
GO:0008283
IEA
PLAZA Integrative Orthologycell proliferation AT1G17110
GO:0016242
IEA
PLAZA Integrative Orthologynegative regulation of macroautophagy FBgn0260936
GO:0016241
IEA
PLAZA Integrative Orthologyregulation of macroautophagy FBgn0260936
GO:0010941
IEA
PLAZA Integrative Orthologyregulation of cell death FBgn0260936
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process YNL186W
GO:0051130
IEA
PLAZA Integrative Orthologypositive regulation of cellular component organization FBgn0260936
GO:0051253
IEA
PLAZA Integrative Orthologynegative regulation of RNA metabolic process YNL186W
GO:1900424
IEA
PLAZA Integrative Orthologyregulation of defense response to bacterium FBgn0260936
GO:0045934
IEA
PLAZA Integrative Orthologynegative regulation of nucleobase-containing compound metabolic process YNL186W
GO:1900425
IEA
PLAZA Integrative Orthologynegative regulation of defense response to bacterium FBgn0260936
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process YNL186W
GO:0010154
IEA
PLAZA Integrative Orthologyfruit development AT1G17110
GO:0045814
IEA
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic YNL186W
GO:0051240
IEA
PLAZA Integrative Orthologypositive regulation of multicellular organismal process FBgn0260936
GO:0051128
IEA
PLAZA Integrative Orthologyregulation of cellular component organization FBgn0260936
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process FBgn0260936
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process FBgn0260936
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process YNL186W
GO:0006325
IEA
PLAZA Integrative Orthologychromatin organization YNL186W
GO:0043067
IEA
PLAZA Integrative Orthologyregulation of programmed cell death FBgn0260936
GO:0080134
IEA
PLAZA Integrative Orthologyregulation of response to stress AT4G24560
GO:1902275
IEA
PLAZA Integrative Orthologyregulation of chromatin organization FBgn0260936
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process AT4G24560
GO:0012501
IEA
PLAZA Integrative Orthologyprogrammed cell death FBgn0260936
GO:0045088
IEA
PLAZA Integrative Orthologyregulation of innate immune response FBgn0260936
GO:0045087
IEA
PLAZA Integrative Orthologyinnate immune response FBgn0260936
GO:0030718
IEA
PLAZA Integrative Orthologygerm-line stem cell population maintenance FBgn0260936
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization YNL186W
GO:1901576
IEA
PLAZA Integrative Orthologyorganic substance biosynthetic process YNL186W
GO:0022414
IEA
PLAZA Integrative Orthologyreproductive process AT1G17110
GO:0050776
IEA
PLAZA Integrative Orthologyregulation of immune response FBgn0260936
GO:0034645
IEA
PLAZA Integrative Orthologycellular macromolecule biosynthetic process YNL186W
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus AT4G24560
GO:0050777
IEA
PLAZA Integrative Orthologynegative regulation of immune response FBgn0260936
GO:0035616
IEA
PLAZA Integrative Orthologyhistone H2B conserved C-terminal lysine deubiquitination FBgn0260936
GO:0032101
IEA
PLAZA Integrative Orthologyregulation of response to external stimulus FBgn0260936
GO:0010558
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule biosynthetic process YNL186W
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process YNL186W
GO:0032102
IEA
PLAZA Integrative Orthologynegative regulation of response to external stimulus FBgn0260936
GO:0034401
IEA
PLAZA Integrative Orthologychromatin organization involved in regulation of transcription YNL186W
GO:0031937
IEA
PLAZA Integrative Orthologypositive regulation of chromatin silencing FBgn0260936
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process YNL186W
GO:0031935
IEA
PLAZA Integrative Orthologyregulation of chromatin silencing FBgn0260936
GO:0048585
IEA
PLAZA Integrative Orthologynegative regulation of response to stimulus FBgn0260936
GO:0048583
IEA
PLAZA Integrative Orthologyregulation of response to stimulus AT4G24560
GO:1903507
IEA
PLAZA Integrative Orthologynegative regulation of nucleic acid-templated transcription YNL186W
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription YNL186W
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development AT1G17110
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process YNL186W
GO:0043207
IEA
PLAZA Integrative Orthologyresponse to external biotic stimulus FBgn0260936
GO:0010467
IEA
PLAZA Integrative Orthologygene expression YNL186W
GO:0099114
IEA
PLAZA Integrative Orthologychromatin silencing at subtelomere YNL186W
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression YNL186W
GO:0019827
IEA
PLAZA Integrative Orthologystem cell population maintenance FBgn0260936
GO:0047484
IEA
PLAZA Integrative Orthologyregulation of response to osmotic stress AT4G24560
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process YNL186W
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process YNL186W
GO:0016578
IEA
PLAZA Integrative Orthologyhistone deubiquitination YNL186W
GO:0016570
IEA
PLAZA Integrative Orthologyhistone modification YNL186W
GO:2000036
IEA
PLAZA Integrative Orthologyregulation of stem cell population maintenance FBgn0260936
GO:0009908
IEA
PLAZA Integrative Orthologyflower development AT1G17110
GO:0002832
IEA
PLAZA Integrative Orthologynegative regulation of response to biotic stimulus FBgn0260936
GO:0002831
IEA
PLAZA Integrative Orthologyregulation of response to biotic stimulus FBgn0260936
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process YNL186W
GO:0003006
IEA
PLAZA Integrative Orthologydevelopmental process involved in reproduction AT1G17110
GO:2001252
IEA
PLAZA Integrative Orthologypositive regulation of chromosome organization FBgn0260936
GO:0051172
IEA
PLAZA Integrative Orthologynegative regulation of nitrogen compound metabolic process YNL186W
GO:0016569
IEA
PLAZA Integrative Orthologycovalent chromatin modification YNL186W
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process YNL186W
GO:0031324
IEA
PLAZA Integrative Orthologynegative regulation of cellular metabolic process YNL186W
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process YNL186W
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process YNL186W
GO:0098727
IEA
PLAZA Integrative Orthologymaintenance of cell number FBgn0260936
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process YNL186W
GO:0031327
IEA
PLAZA Integrative Orthologynegative regulation of cellular biosynthetic process YNL186W
GO:0031329
IEA
PLAZA Integrative Orthologyregulation of cellular catabolic process FBgn0260936
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress AT4G24560
GO:0006952
IEA
PLAZA Integrative Orthologydefense response FBgn0260936
GO:0048827
IEA
PLAZA Integrative Orthologyphyllome development AT1G17110
GO:0090567
IEA
PLAZA Integrative Orthologyreproductive shoot system development AT1G17110
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process YNL186W
GO:0031330
IEA
PLAZA Integrative Orthologynegative regulation of cellular catabolic process FBgn0260936
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process YNL186W
GO:0035019
IEA
PLAZA Integrative Orthologysomatic stem cell population maintenance FBgn0260936
GO:0010638
IEA
PLAZA Integrative Orthologypositive regulation of organelle organization FBgn0260936
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process YNL186W
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process YNL186W
GO:0061919
IEA
PLAZA Integrative Orthologyprocess utilizing autophagic mechanism FBgn0260936
GO:1902459
IEA
PLAZA Integrative Orthologypositive regulation of stem cell population maintenance FBgn0260936
GO:0009894
IEA
PLAZA Integrative Orthologyregulation of catabolic process FBgn0260936
GO:0009895
IEA
PLAZA Integrative Orthologynegative regulation of catabolic process FBgn0260936
GO:0009890
IEA
PLAZA Integrative Orthologynegative regulation of biosynthetic process YNL186W
GO:0022622
IEA
PLAZA Integrative Orthologyroot system development AT1G17110
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process YNL186W
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process YNL186W
GO:0009651
IEA
PLAZA Integrative Orthologyresponse to salt stress AT4G24560
GO:1901000
IEA
PLAZA Integrative Orthologyregulation of response to salt stress AT4G24560
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process YNL186W
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process YNL186W
GO:0031347
IEA
PLAZA Integrative Orthologyregulation of defense response FBgn0260936
GO:0031348
IEA
PLAZA Integrative Orthologynegative regulation of defense response FBgn0260936
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription YNL186W
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process YNL186W
GO:0002376
IEA
PLAZA Integrative Orthologyimmune system process FBgn0260936
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation AT4G24560
GO:0006970
IEA
PLAZA Integrative Orthologyresponse to osmotic stress AT4G24560
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process YNL186W
GO:2000113
IEA
PLAZA Integrative Orthologynegative regulation of cellular macromolecule biosynthetic process YNL186W
GO:0048366
IEA
PLAZA Integrative Orthologyleaf development AT1G17110
GO:0048367
IEA
PLAZA Integrative Orthologyshoot system development AT1G17110
GO:0045892
IEA
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated YNL186W
GO:0006955
IEA
PLAZA Integrative Orthologyimmune response FBgn0260936
GO:0008219
IEA
PLAZA Integrative Orthologycell death FBgn0260936
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process YNL186W
GO:0050793
IEA
PLAZA Integrative Orthologyregulation of developmental process FBgn0260936
GO:0048364
IEA
PLAZA Integrative Orthologyroot development AT1G17110
GO:1902679
IEA
PLAZA Integrative Orthologynegative regulation of RNA biosynthetic process YNL186W
GO:0061458
IEA
PLAZA Integrative Orthologyreproductive system development AT1G17110
GO:0051094
IEA
PLAZA Integrative Orthologypositive regulation of developmental process FBgn0260936
GO:0009791
IEA
PLAZA Integrative Orthologypost-embryonic development AT1G17110
GO:1905269
IEA
PLAZA Integrative Orthologypositive regulation of chromatin organization FBgn0260936
GO:0043900
IEA
PLAZA Integrative Orthologyregulation of multi-organism process FBgn0260936
GO:0043901
IEA
PLAZA Integrative Orthologynegative regulation of multi-organism process FBgn0260936

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0036459
IEA
InterProthiol-dependent ubiquitinyl hydrolase activity
GO:0004843
IEA
PLAZA Integrative Orthologythiol-dependent ubiquitin-specific protease activity SPCC16A11.12c
GO:0005488
IEA
PLAZA Integrative Orthologybinding AT1G17110
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding AT1G17110

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen YNL186W
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen YNL186W
GO:0012505
IEA
PLAZA Integrative Orthologyendomembrane system SPCC16A11.12c
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen YNL186W
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPCC16A11.12c
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part YNL186W
GO:0005783
IEA
PLAZA Integrative Orthologyendoplasmic reticulum SPCC16A11.12c
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part YNL186W
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm FBgn0260936
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm SPCC16A11.12c
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPCC16A11.12c
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPCC16A11.12c
GO:0005730
IEA
PLAZA Integrative Orthologynucleolus YNL186W
GO:0005634
IEA
PLAZA Integrative Orthologynucleus AT1G17110
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part YNL186W
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPCC16A11.12c
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen YNL186W
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle YNL186W
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPCC16A11.12c
GO:0005623
IEA
PLAZA Integrative Orthologycell SPCC16A11.12c
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPCC16A11.12c
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle YNL186W
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPCC16A11.12c
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPCC16A11.12c

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR002893Zinc finger, MYND-type
IPR018200Ubiquitin specific protease, conserved site
IPR028889Ubiquitin specific protease domain

No MapMan annotations defined for this gene.
KeggID Description
K11855USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12]
No chloroplast target sequence found.