Gene: Pp3c1_32190 (Physcomitrella patens)

Overview top

Gene Identifier
Pp3c1_32190
Transcript Identifier
Pp3c1_32190V3.1
Gene Type
Coding gene
Location
Chr01 : 22686316-22687595 : positive

Family Information

Homologous gene family
HOM02SEM000643
(64 genes in 23 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Descriptions

Identifiers

Type Value
namePp3c1_32190V3.1
tidPAC:32971341
aliasPp1s249_51V6
aliasPhypa_146842
pacid32971341

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048193
IEA
PLAZA Integrative OrthologyGolgi vesicle transport YBL078C
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process YBL078C
GO:0012501
IEA
PLAZA Integrative Orthologyprogrammed cell death WBGene00002980
GO:0061709
IEA
PLAZA Integrative Orthologyreticulophagy YBL078C
GO:0051234
IEA
PLAZA Integrative Orthologyestablishment of localization YBL078C
GO:0009617
IEA
PLAZA Integrative Orthologyresponse to bacterium WBGene00002980
GO:0022411
IEA
PLAZA Integrative Orthologycellular component disassembly YBL078C
GO:0042886
IEA
PLAZA Integrative Orthologyamide transport YBL078C
GO:0009987
IEA
PLAZA Integrative Orthologycellular process SPBP8B7.24c
GO:0007568
IEA
PLAZA Integrative Orthologyaging WBGene00002980
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization YBL078C
GO:0009620
IEA
PLAZA Integrative Orthologyresponse to fungus AT4G21980
GO:0061024
IEA
PLAZA Integrative Orthologymembrane organization YBL078C
GO:0061025
IEA
PLAZA Integrative Orthologymembrane fusion YBL078C
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process WBGene00002980
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus AT4G21980
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process WBGene00002980
GO:0033036
IEA
PLAZA Integrative Orthologymacromolecule localization YBL078C
GO:0009605
IEA
PLAZA Integrative Orthologyresponse to external stimulus AT4G21980
GO:0070265
IEA
PLAZA Integrative Orthologynecrotic cell death WBGene00002980
GO:0009607
IEA
PLAZA Integrative Orthologyresponse to biotic stimulus AT4G21980
GO:0006623
IEA
PLAZA Integrative Orthologyprotein targeting to vacuole YBL078C
GO:0007034
IEA
PLAZA Integrative Orthologyvacuolar transport YBL078C
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development WBGene00002980
GO:0033043
IEA
PLAZA Integrative Orthologyregulation of organelle organization WBGene00002980
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development WBGene00002980
GO:0007033
IEA
PLAZA Integrative Orthologyvacuole organization YBL078C
GO:0009056
IEA
PLAZA Integrative Orthologycatabolic process SPBP8B7.24c
GO:0034497
IEA
PLAZA Integrative Orthologyprotein localization to phagophore assembly site YBL078C
GO:0043207
IEA
PLAZA Integrative Orthologyresponse to external biotic stimulus AT4G21980
GO:0044090
IEA
PLAZA Integrative Orthologypositive regulation of vacuole organization WBGene00002980
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization YBL078C
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis YBL078C
GO:0010506
IEA
PLAZA Integrative Orthologyregulation of autophagy YBL078C
GO:0051179
IEA
PLAZA Integrative Orthologylocalization YBL078C
GO:0006888
IEA
PLAZA Integrative OrthologyER to Golgi vesicle-mediated transport YBL078C
GO:0010508
IEA
PLAZA Integrative Orthologypositive regulation of autophagy WBGene00002980
GO:0045184
IEA
PLAZA Integrative Orthologyestablishment of protein localization YBL078C
GO:0098542
IEA
PLAZA Integrative Orthologydefense response to other organism AT4G21980
GO:0042742
IEA
PLAZA Integrative Orthologydefense response to bacterium WBGene00002980
GO:0006810
IEA
PLAZA Integrative Orthologytransport YBL078C
GO:0000422
IEA
PLAZA Integrative Orthologyautophagy of mitochondrion YBL078C
GO:0044248
IEA
PLAZA Integrative Orthologycellular catabolic process SPBP8B7.24c
GO:0008152
IEA
PLAZA Integrative Orthologymetabolic process SPBP8B7.24c
GO:0044804
IEA
PLAZA Integrative Orthologyautophagy of nucleus YBL078C
GO:0044805
IEA
PLAZA Integrative Orthologylate nucleophagy YBL078C
GO:0072666
IEA
PLAZA Integrative Orthologyestablishment of protein localization to vacuole YBL078C
GO:0072665
IEA
PLAZA Integrative Orthologyprotein localization to vacuole YBL078C
GO:0044088
IEA
PLAZA Integrative Orthologyregulation of vacuole organization WBGene00002980
GO:0044089
IEA
PLAZA Integrative Orthologypositive regulation of cellular component biogenesis WBGene00002980
GO:0006914
IEA
PLAZA Integrative Orthologyautophagy SPBP8B7.24c
GO:0044087
IEA
PLAZA Integrative Orthologyregulation of cellular component biogenesis WBGene00002980
GO:0071211
IEA
PLAZA Integrative Orthologyprotein targeting to vacuole involved in autophagy YBL078C
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis YBL078C
GO:0044237
IEA
PLAZA Integrative Orthologycellular metabolic process SPBP8B7.24c
GO:0006886
IEA
PLAZA Integrative Orthologyintracellular protein transport YBL078C
GO:1902115
IEA
PLAZA Integrative Orthologyregulation of organelle assembly WBGene00002980
GO:0002164
IEA
PLAZA Integrative Orthologylarval development WBGene00002980
GO:1902117
IEA
PLAZA Integrative Orthologypositive regulation of organelle assembly WBGene00002980
GO:0022607
IEA
PLAZA Integrative Orthologycellular component assembly YBL078C
GO:0070925
IEA
PLAZA Integrative Orthologyorganelle assembly YBL078C
GO:0032258
IEA
PLAZA Integrative Orthologyprotein localization by the Cvt pathway YBL078C
GO:0071702
IEA
PLAZA Integrative Orthologyorganic substance transport YBL078C
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process YBL078C
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process WBGene00002980
GO:2000786
IEA
PLAZA Integrative Orthologypositive regulation of autophagosome assembly WBGene00002980
GO:2000785
IEA
PLAZA Integrative Orthologyregulation of autophagosome assembly WBGene00002980
GO:0031329
IEA
PLAZA Integrative Orthologyregulation of cellular catabolic process YBL078C
GO:0072594
IEA
PLAZA Integrative Orthologyestablishment of protein localization to organelle YBL078C
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress AT4G21980
GO:0007005
IEA
PLAZA Integrative Orthologymitochondrion organization YBL078C
GO:0006952
IEA
PLAZA Integrative Orthologydefense response AT4G21980
GO:0040024
IEA
PLAZA Integrative Orthologydauer larval development WBGene00002980
GO:0016237
IEA
PLAZA Integrative Orthologylysosomal microautophagy YBL078C
GO:0071705
IEA
PLAZA Integrative Orthologynitrogen compound transport YBL078C
GO:0016236
IEA
PLAZA Integrative Orthologymacroautophagy SPBP8B7.24c
GO:0051704
IEA
PLAZA Integrative Orthologymulti-organism process AT4G21980
GO:0031331
IEA
PLAZA Integrative Orthologypositive regulation of cellular catabolic process WBGene00002980
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process YBL078C
GO:0010638
IEA
PLAZA Integrative Orthologypositive regulation of organelle organization WBGene00002980
GO:0016192
IEA
PLAZA Integrative Orthologyvesicle-mediated transport YBL078C
GO:0034727
IEA
PLAZA Integrative Orthologypiecemeal microautophagy of the nucleus YBL078C
GO:0000045
IEA
PLAZA Integrative Orthologyautophagosome assembly YBL078C
GO:0061919
IEA
PLAZA Integrative Orthologyprocess utilizing autophagic mechanism SPBP8B7.24c
GO:0009894
IEA
PLAZA Integrative Orthologyregulation of catabolic process YBL078C
GO:0009896
IEA
PLAZA Integrative Orthologypositive regulation of catabolic process WBGene00002980
GO:0061912
IEA
PLAZA Integrative Orthologyselective autophagy YBL078C
GO:0051707
IEA
PLAZA Integrative Orthologyresponse to other organism AT4G21980
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process WBGene00002980
GO:0034613
IEA
PLAZA Integrative Orthologycellular protein localization YBL078C
GO:0015833
IEA
PLAZA Integrative Orthologypeptide transport YBL078C
GO:0010942
IEA
PLAZA Integrative Orthologypositive regulation of cell death WBGene00002980
GO:0033365
IEA
PLAZA Integrative Orthologyprotein localization to organelle YBL078C
GO:0010940
IEA
PLAZA Integrative Orthologypositive regulation of necrotic cell death WBGene00002980
GO:0010941
IEA
PLAZA Integrative Orthologyregulation of cell death WBGene00002980
GO:0016241
IEA
PLAZA Integrative Orthologyregulation of macroautophagy YBL078C
GO:0051130
IEA
PLAZA Integrative Orthologypositive regulation of cellular component organization WBGene00002980
GO:0031503
IEA
PLAZA Integrative Orthologyprotein-containing complex localization YBL078C
GO:0006605
IEA
PLAZA Integrative Orthologyprotein targeting YBL078C
GO:0061726
IEA
PLAZA Integrative Orthologymitochondrion disassembly YBL078C
GO:0046907
IEA
PLAZA Integrative Orthologyintracellular transport YBL078C
GO:1905037
IEA
PLAZA Integrative Orthologyautophagosome organization YBL078C
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation YBL078C
GO:0016239
IEA
PLAZA Integrative Orthologypositive regulation of macroautophagy WBGene00002980
GO:0051128
IEA
PLAZA Integrative Orthologyregulation of cellular component organization WBGene00002980
GO:0050830
IEA
PLAZA Integrative Orthologydefense response to Gram-positive bacterium WBGene00002980
GO:0050832
IEA
PLAZA Integrative Orthologydefense response to fungus AT4G21980
GO:0051649
IEA
PLAZA Integrative Orthologyestablishment of localization in cell YBL078C
GO:0010259
IEA
PLAZA Integrative Orthologymulticellular organism aging WBGene00002980
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process WBGene00002980
GO:0010939
IEA
PLAZA Integrative Orthologyregulation of necrotic cell death WBGene00002980
GO:0008219
IEA
PLAZA Integrative Orthologycell death WBGene00002980
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process YBL078C
GO:0051641
IEA
PLAZA Integrative Orthologycellular localization YBL078C
GO:0034629
IEA
PLAZA Integrative Orthologycellular protein-containing complex localization YBL078C
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process WBGene00002980
GO:1903008
IEA
PLAZA Integrative Orthologyorganelle disassembly YBL078C
GO:0008104
IEA
PLAZA Integrative Orthologyprotein localization YBL078C
GO:0015031
IEA
PLAZA Integrative Orthologyprotein transport YBL078C
GO:0009791
IEA
PLAZA Integrative Orthologypost-embryonic development WBGene00002980
GO:0008340
IEA
PLAZA Integrative Orthologydetermination of adult lifespan WBGene00002980
GO:0070727
IEA
PLAZA Integrative Orthologycellular macromolecule localization YBL078C

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005543
IEA
PLAZA Integrative Orthologyphospholipid binding YBL078C
GO:0043168
IEA
PLAZA Integrative Orthologyanion binding YBL078C
GO:0043167
IEA
PLAZA Integrative Orthologyion binding YBL078C
GO:0031386
IEA
PLAZA Integrative Orthologyprotein tag YBL078C
GO:0008429
IEA
PLAZA Integrative Orthologyphosphatidylethanolamine binding YBL078C
GO:0008289
IEA
PLAZA Integrative Orthologylipid binding YBL078C
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding AT4G16520
GO:0005488
IEA
PLAZA Integrative Orthologybinding AT4G16520

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0098805
IEA
PLAZA Integrative Orthologywhole membrane YBL078C
GO:0019898
IEA
PLAZA Integrative Orthologyextrinsic component of membrane YBL078C
GO:0016020
IEA
PLAZA Integrative Orthologymembrane YBL078C
GO:0031090
IEA
PLAZA Integrative Orthologyorganelle membrane YBL078C
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPBP8B7.24c
GO:0044425
IEA
PLAZA Integrative Orthologymembrane part YBL078C
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part YBL078C
GO:0000407
IEA
PLAZA Integrative Orthologyphagophore assembly site YBL078C
GO:0044429
IEA
PLAZA Integrative Orthologymitochondrial part WBGene00002980
GO:0005776
IEA
PLAZA Integrative Orthologyautophagosome AT4G21980
GO:0005773
IEA
PLAZA Integrative Orthologyvacuole SPBP8B7.24c
GO:0005774
IEA
PLAZA Integrative Orthologyvacuolar membrane YBL078C
GO:0000421
IEA
PLAZA Integrative Orthologyautophagosome membrane WBGene00002980
GO:0005829
IEA
PLAZA Integrative Orthologycytosol SPBP8B7.24c
GO:0120095
IEA
PLAZA Integrative Orthologyvacuole-isolation membrane contact site YBL078C
GO:0044232
IEA
PLAZA Integrative Orthologyorganelle membrane contact site YBL078C
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm SPBP8B7.24c
GO:0031966
IEA
PLAZA Integrative Orthologymitochondrial membrane WBGene00002980
GO:0031968
IEA
PLAZA Integrative Orthologyorganelle outer membrane WBGene00002980
GO:0031967
IEA
PLAZA Integrative Orthologyorganelle envelope WBGene00002980
GO:0061908
IEA
PLAZA Integrative Orthologyphagophore AT4G21980
GO:0000322
IEA
PLAZA Integrative Orthologystorage vacuole SPBP8B7.24c
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPBP8B7.24c
GO:0005740
IEA
PLAZA Integrative Orthologymitochondrial envelope WBGene00002980
GO:0000323
IEA
PLAZA Integrative Orthologylytic vacuole SPBP8B7.24c
GO:0005741
IEA
PLAZA Integrative Orthologymitochondrial outer membrane WBGene00002980
GO:0000324
IEA
PLAZA Integrative Orthologyfungal-type vacuole SPBP8B7.24c
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPBP8B7.24c
GO:0000329
IEA
PLAZA Integrative Orthologyfungal-type vacuole membrane YBL078C
GO:0019867
IEA
PLAZA Integrative Orthologyouter membrane WBGene00002980
GO:0031975
IEA
PLAZA Integrative Orthologyenvelope WBGene00002980
GO:0098588
IEA
PLAZA Integrative Orthologybounding membrane of organelle YBL078C
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPBP8B7.24c
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part YBL078C
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPBP8B7.24c
GO:0098852
IEA
PLAZA Integrative Orthologylytic vacuole membrane YBL078C
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPBP8B7.24c
GO:0044437
IEA
PLAZA Integrative Orthologyvacuolar part YBL078C
GO:0005623
IEA
PLAZA Integrative Orthologycell SPBP8B7.24c
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPBP8B7.24c
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPBP8B7.24c
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPBP8B7.24c

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR029071Ubiquitin-like domain superfamily
IPR004241Autophagy protein Atg8 ubiquitin-like

No MapMan annotations defined for this gene.
KeggID Description
K08341GABARAP, ATG8, LC3; GABA(A) receptor-associated protein
No chloroplast target sequence found.