Gene: Naga_100192g6 (Nannochloropsis gaditana)

Overview top

Gene Identifier
Naga_100192g6
Transcript Identifier
EWM27320
Gene Type
Coding gene
Location
7 : 213856-216552 : positive

Family Information

Homologous gene family
HOM02SEM001180
(44 genes in 24 species)
specific family
Orthologous gene family
ORTHO02SEM001331
(42 genes in 24 species)
specific family

Descriptions

gene_descr
trna (5-methylaminomethyl-2-thiouridylate)- methyltransferase

Identifiers

Type Value
pidEWM27320
UniprotW7TJQ7

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008033
IEA
InterProtRNA processing
GO:0070899
IEA
PLAZA Integrative Orthologymitochondrial tRNA wobble uridine modification YDL033C
GO:1990799
IEA
PLAZA Integrative Orthologymitochondrial tRNA wobble position uridine thiolation YDL033C
GO:1900864
IEA
PLAZA Integrative Orthologymitochondrial RNA modification YDL033C
GO:0043412
IEA
PLAZA Integrative Orthologymacromolecule modification YDL033C
GO:0000963
IEA
PLAZA Integrative Orthologymitochondrial RNA processing YDL033C
GO:0002098
IEA
PLAZA Integrative OrthologytRNA wobble uridine modification YDL033C
GO:0002097
IEA
PLAZA Integrative OrthologytRNA wobble base modification YDL033C
GO:0140053
IEA
PLAZA Integrative Orthologymitochondrial gene expression YDL033C
GO:0090646
IEA
PLAZA Integrative Orthologymitochondrial tRNA processing YDL033C
GO:0070525
IEA
PLAZA Integrative OrthologytRNA threonylcarbamoyladenosine metabolic process YDL033C
GO:0034227
IEA
PLAZA Integrative OrthologytRNA thio-modification YDL033C
GO:0070900
IEA
PLAZA Integrative Orthologymitochondrial tRNA modification YDL033C
GO:0006400
IEA
PLAZA Integrative OrthologytRNA modification YDL033C
GO:0002143
IEA
PLAZA Integrative OrthologytRNA wobble position uridine thiolation YDL033C
GO:0009451
IEA
PLAZA Integrative OrthologyRNA modification YDL033C
GO:0000959
IEA
PLAZA Integrative Orthologymitochondrial RNA metabolic process YDL033C
GO:0070903
IEA
PLAZA Integrative Orthologymitochondrial tRNA thio-modification YDL033C

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
InterProtransferase activity
GO:0016783
IEA
InterProsulfurtransferase activity
GO:0140101
IEA
PLAZA Integrative Orthologycatalytic activity, acting on a tRNA YDL033C
GO:0061708
IEA
PLAZA Integrative OrthologytRNA-5-taurinomethyluridine 2-sulfurtransferase YDL033C
GO:0140098
IEA
PLAZA Integrative Orthologycatalytic activity, acting on RNA YDL033C

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
PLAZA Integrative Orthologymitochondrion SPAC23H4.04
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm SPAC23H4.04
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPAC23H4.04
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPAC23H4.04
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPAC23H4.04
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPAC23H4.04
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPAC23H4.04
GO:0005623
IEA
PLAZA Integrative Orthologycell SPAC23H4.04
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPAC23H4.04
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPAC23H4.04
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPAC23H4.04

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR004506tRNA-specific 2-thiouridylase
IPR014729Rossmann-like alpha/beta/alpha sandwich fold
IPR023382Adenine nucleotide alpha hydrolase-like domains
IPR003808Fe-S metabolism associated domain, SufE-like

No MapMan annotations defined for this gene.
KeggID Description
K00566mnmA, trmU; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
No chloroplast target sequence found.