Gene: Ec-06_007410 (Ectocarpus siliculosus)

Overview top

Gene Identifier
Ec-06_007410
Transcript Identifier
Ec-06_007410.1
Gene Type
Coding gene
Location
chr_06 : 5109287-5118890 : positive

Family Information

Homologous gene family
HOM02SEM005093
(16 genes in 14 species)
specific family

Descriptions

Identifiers

Type Value
GeneNameEc-06_007410

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0010564
IEA
PLAZA Integrative Orthologyregulation of cell cycle process ENSG00000154767
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process YER162C
GO:0071103
IEA
PLAZA Integrative OrthologyDNA conformation change YER162C
GO:0006508
IEA
PLAZA Integrative Orthologyproteolysis YER162C
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process YER162C
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process YER162C
GO:0006511
IEA
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process YER162C
GO:0006357
IEA
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II YER162C
GO:0007049
IEA
PLAZA Integrative Orthologycell cycle ENSG00000154767
GO:0000003
IEA
PLAZA Integrative Orthologyreproduction FBgn0004698
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization YER162C
GO:0022414
IEA
PLAZA Integrative Orthologyreproductive process FBgn0004698
GO:1901575
IEA
PLAZA Integrative Orthologyorganic substance catabolic process YER162C
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated YER162C
GO:0044267
IEA
PLAZA Integrative Orthologycellular protein metabolic process YER162C
GO:1901576
IEA
PLAZA Integrative Orthologyorganic substance biosynthetic process YER162C
GO:0030163
IEA
PLAZA Integrative Orthologyprotein catabolic process YER162C
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated YER162C
GO:0034645
IEA
PLAZA Integrative Orthologycellular macromolecule biosynthetic process YER162C
GO:0019941
IEA
PLAZA Integrative Orthologymodification-dependent protein catabolic process YER162C
GO:0071478
IEA
PLAZA Integrative Orthologycellular response to radiation ENSG00000154767
GO:0010558
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule biosynthetic process YER162C
GO:0034644
IEA
PLAZA Integrative Orthologycellular response to UV ENSG00000154767
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process YER162C
GO:0032508
IEA
PLAZA Integrative OrthologyDNA duplex unwinding ENSG00000154767
GO:0044265
IEA
PLAZA Integrative Orthologycellular macromolecule catabolic process YER162C
GO:0000122
IEA
PLAZA Integrative Orthologynegative regulation of transcription by RNA polymerase II YER162C
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription YER162C
GO:1903507
IEA
PLAZA Integrative Orthologynegative regulation of nucleic acid-templated transcription YER162C
GO:0044257
IEA
PLAZA Integrative Orthologycellular protein catabolic process YER162C
GO:0009058
IEA
PLAZA Integrative Orthologybiosynthetic process YER162C
GO:0009059
IEA
PLAZA Integrative Orthologymacromolecule biosynthetic process YER162C
GO:0044772
IEA
PLAZA Integrative Orthologymitotic cell cycle phase transition ENSG00000154767
GO:1901565
IEA
PLAZA Integrative Orthologyorganonitrogen compound catabolic process YER162C
GO:1901564
IEA
PLAZA Integrative Orthologyorganonitrogen compound metabolic process YER162C
GO:0009056
IEA
PLAZA Integrative Orthologycatabolic process YER162C
GO:0009057
IEA
PLAZA Integrative Orthologymacromolecule catabolic process YER162C
GO:0019538
IEA
PLAZA Integrative Orthologyprotein metabolic process YER162C
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process YER162C
GO:0070911
IEA
PLAZA Integrative Orthologyglobal genome nucleotide-excision repair ENSG00000154767
GO:0104004
IEA
PLAZA Integrative Orthologycellular response to environmental stimulus ENSG00000154767
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis YER162C
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process YER162C
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression YER162C
GO:0010467
IEA
PLAZA Integrative Orthologygene expression YER162C
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization YER162C
GO:0043161
IEA
PLAZA Integrative Orthologyproteasome-mediated ubiquitin-dependent protein catabolic process YER162C
GO:0044770
IEA
PLAZA Integrative Orthologycell cycle phase transition ENSG00000154767
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression YER162C
GO:0044248
IEA
PLAZA Integrative Orthologycellular catabolic process YER162C
GO:0007346
IEA
PLAZA Integrative Orthologyregulation of mitotic cell cycle ENSG00000154767
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process YER162C
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process YER162C
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process YER162C
GO:0070914
IEA
PLAZA Integrative OrthologyUV-damage excision repair ENSG00000154767
GO:0051603
IEA
PLAZA Integrative Orthologyproteolysis involved in cellular protein catabolic process YER162C
GO:0071214
IEA
PLAZA Integrative Orthologycellular response to abiotic stimulus ENSG00000154767
GO:0051726
IEA
PLAZA Integrative Orthologyregulation of cell cycle ENSG00000154767
GO:0048285
IEA
PLAZA Integrative Orthologyorganelle fission FBgn0004698
GO:0051321
IEA
PLAZA Integrative Orthologymeiotic cell cycle FBgn0004698
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis ENSG00000154767
GO:0009628
IEA
PLAZA Integrative Orthologyresponse to abiotic stimulus ENSG00000154767
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process YER162C
GO:0051172
IEA
PLAZA Integrative Orthologynegative regulation of nitrogen compound metabolic process YER162C
GO:0006366
IEA
PLAZA Integrative Orthologytranscription by RNA polymerase II YER162C
GO:1903046
IEA
PLAZA Integrative Orthologymeiotic cell cycle process FBgn0004698
GO:0022607
IEA
PLAZA Integrative Orthologycellular component assembly ENSG00000154767
GO:1903047
IEA
PLAZA Integrative Orthologymitotic cell cycle process ENSG00000154767
GO:0031324
IEA
PLAZA Integrative Orthologynegative regulation of cellular metabolic process YER162C
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process YER162C
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process YER162C
GO:0071824
IEA
PLAZA Integrative Orthologyprotein-DNA complex subunit organization ENSG00000154767
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process YER162C
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process YER162C
GO:0051276
IEA
PLAZA Integrative Orthologychromosome organization YER162C
GO:0007127
IEA
PLAZA Integrative Orthologymeiosis I FBgn0004698
GO:0031327
IEA
PLAZA Integrative Orthologynegative regulation of cellular biosynthetic process YER162C
GO:0006310
IEA
PLAZA Integrative OrthologyDNA recombination FBgn0004698
GO:0061982
IEA
PLAZA Integrative Orthologymeiosis I cell cycle process FBgn0004698
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process YER162C
GO:0043933
IEA
PLAZA Integrative Orthologyprotein-containing complex subunit organization ENSG00000154767
GO:0140013
IEA
PLAZA Integrative Orthologymeiotic nuclear division FBgn0004698
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process YER162C
GO:0000280
IEA
PLAZA Integrative Orthologynuclear division FBgn0004698
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process YER162C
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process YER162C
GO:0000278
IEA
PLAZA Integrative Orthologymitotic cell cycle ENSG00000154767
GO:0009416
IEA
PLAZA Integrative Orthologyresponse to light stimulus ENSG00000154767
GO:0000710
IEA
PLAZA Integrative Orthologymeiotic mismatch repair FBgn0004698
GO:0009411
IEA
PLAZA Integrative Orthologyresponse to UV ENSG00000154767
GO:0006265
IEA
PLAZA Integrative OrthologyDNA topological change YER162C
GO:0009890
IEA
PLAZA Integrative Orthologynegative regulation of biosynthetic process YER162C
GO:0000715
IEA
PLAZA Integrative Orthologynucleotide-excision repair, DNA damage recognition ENSG00000154767
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process YER162C
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process YER162C
GO:0000717
IEA
PLAZA Integrative Orthologynucleotide-excision repair, DNA duplex unwinding ENSG00000154767
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process YER162C
GO:0032392
IEA
PLAZA Integrative OrthologyDNA geometric change ENSG00000154767
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription YER162C
GO:0035825
IEA
PLAZA Integrative Orthologyhomologous recombination FBgn0004698
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process YER162C
GO:0051253
IEA
PLAZA Integrative Orthologynegative regulation of RNA metabolic process YER162C
GO:0071482
IEA
PLAZA Integrative Orthologycellular response to light stimulus ENSG00000154767
GO:0043632
IEA
PLAZA Integrative Orthologymodification-dependent macromolecule catabolic process YER162C
GO:0045934
IEA
PLAZA Integrative Orthologynegative regulation of nucleobase-containing compound metabolic process YER162C
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process YER162C
GO:0006298
IEA
PLAZA Integrative Orthologymismatch repair SPAC12B10.12c
GO:0006294
IEA
PLAZA Integrative Orthologynucleotide-excision repair, preincision complex assembly ENSG00000154767
GO:0065004
IEA
PLAZA Integrative Orthologyprotein-DNA complex assembly ENSG00000154767
GO:0065003
IEA
PLAZA Integrative Orthologyprotein-containing complex assembly ENSG00000154767
GO:1901990
IEA
PLAZA Integrative Orthologyregulation of mitotic cell cycle phase transition ENSG00000154767
GO:0010498
IEA
PLAZA Integrative Orthologyproteasomal protein catabolic process YER162C
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation YER162C
GO:0010777
IEA
PLAZA Integrative Orthologymeiotic mismatch repair involved in reciprocal meiotic recombination FBgn0004698
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process YER162C
GO:0034622
IEA
PLAZA Integrative Orthologycellular protein-containing complex assembly ENSG00000154767
GO:2000113
IEA
PLAZA Integrative Orthologynegative regulation of cellular macromolecule biosynthetic process YER162C
GO:0045892
IEA
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated YER162C
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process YER162C
GO:1902679
IEA
PLAZA Integrative Orthologynegative regulation of RNA biosynthetic process YER162C
GO:1901987
IEA
PLAZA Integrative Orthologyregulation of cell cycle phase transition ENSG00000154767
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process YER162C
GO:0009314
IEA
PLAZA Integrative Orthologyresponse to radiation ENSG00000154767
GO:0007131
IEA
PLAZA Integrative Orthologyreciprocal meiotic recombination FBgn0004698
GO:0022402
IEA
PLAZA Integrative Orthologycell cycle process ENSG00000154767

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003684
IEA
InterProdamaged DNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000404
IEA
PLAZA Integrative Orthologyheteroduplex DNA loop binding ENSG00000154767
GO:0000405
IEA
PLAZA Integrative Orthologybubble DNA binding ENSG00000154767
GO:0030983
IEA
PLAZA Integrative Orthologymismatched DNA binding ENSG00000154767
GO:0044877
IEA
PLAZA Integrative Orthologyprotein-containing complex binding ENSG00000154767
GO:0032135
IEA
PLAZA Integrative OrthologyDNA insertion or deletion binding ENSG00000154767
GO:1990165
IEA
PLAZA Integrative Orthologysingle-strand break-containing DNA binding YER162C
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000154767
GO:0003697
IEA
PLAZA Integrative Orthologysingle-stranded DNA binding ENSG00000154767
GO:0000217
IEA
PLAZA Integrative OrthologyDNA secondary structure binding ENSG00000154767
GO:0003690
IEA
PLAZA Integrative Orthologydouble-stranded DNA binding ENSG00000154767

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0016020
IEA
PLAZA Integrative Orthologymembrane ENSG00000154767
GO:0005819
IEA
PLAZA Integrative Orthologyspindle SPAC12B10.12c
GO:0044430
IEA
PLAZA Integrative Orthologycytoskeletal part SPAC12B10.12c
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen SPCC4G3.10c
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part SPAC12B10.12c
GO:0044421
IEA
PLAZA Integrative Orthologyextracellular region part ENSG00000154767
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part SPCC4G3.10c
GO:0072686
IEA
PLAZA Integrative Orthologymitotic spindle SPAC12B10.12c
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000154767
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex YER162C
GO:0005829
IEA
PLAZA Integrative Orthologycytosol YER162C
GO:0009507
IEA
PLAZA Integrative Orthologychloroplast AT5G16630
GO:0015630
IEA
PLAZA Integrative Orthologymicrotubule cytoskeleton SPAC12B10.12c
GO:1903561
IEA
PLAZA Integrative Orthologyextracellular vesicle ENSG00000154767
GO:0071944
IEA
PLAZA Integrative Orthologycell periphery ENSG00000154767
GO:0071942
IEA
PLAZA Integrative OrthologyXPC complex ENSG00000154767
GO:0005739
IEA
PLAZA Integrative Orthologymitochondrion ENSG00000154767
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm AT5G16630
GO:0005856
IEA
PLAZA Integrative Orthologycytoskeleton SPAC12B10.12c
GO:0005615
IEA
PLAZA Integrative Orthologyextracellular space ENSG00000154767
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen SPCC4G3.10c
GO:0070062
IEA
PLAZA Integrative Orthologyextracellular exosome ENSG00000154767
GO:0009536
IEA
PLAZA Integrative Orthologyplastid AT5G16630
GO:0005576
IEA
PLAZA Integrative Orthologyextracellular region ENSG00000154767
GO:0005730
IEA
PLAZA Integrative Orthologynucleolus SPCC4G3.10c
GO:1990391
IEA
PLAZA Integrative OrthologyDNA repair complex YER162C
GO:0031982
IEA
PLAZA Integrative Orthologyvesicle ENSG00000154767
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen SPCC4G3.10c
GO:0000111
IEA
PLAZA Integrative Orthologynucleotide-excision repair factor 2 complex YER162C
GO:0005886
IEA
PLAZA Integrative Orthologyplasma membrane ENSG00000154767
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part SPAC12B10.12c
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part AT5G16630
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle SPAC12B10.12c
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen SPCC4G3.10c
GO:0000109
IEA
PLAZA Integrative Orthologynucleotide-excision repair complex YER162C
GO:0043230
IEA
PLAZA Integrative Orthologyextracellular organelle ENSG00000154767
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle SPAC12B10.12c

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR004583DNA repair protein Rad4
IPR018325Rad4/PNGase transglutaminase-like fold
IPR002931Transglutaminase-like
IPR018326Rad4 beta-hairpin domain 1
IPR018328Rad4 beta-hairpin domain 3
IPR018327Rad4 beta-hairpin domain 2

No MapMan annotations defined for this gene.
KeggID Description
K10838XPC; xeroderma pigmentosum group C-complementing protein
No chloroplast target sequence found.