Gene: CC00G57060 (Cyclotella cryptica)

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Gene Identifier
CC00G57060
Transcript Identifier
CC00G57060.1
Gene Type
Coding gene
Location
g018176_00158 : 4895-5969 : positive

Family Information

Homologous gene family
HOM02SEM001860
(34 genes in 25 species)
specific family
Orthologous gene family
ORTHO02SEM001931
(33 genes in 25 species)
specific family

Descriptions

eggnog_description
Activator of basal transcription

Identifiers

Type Value
GeneNameg11648.t1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process FBgn0030085
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation FBgn0052708
GO:0009617
IEA
PLAZA Integrative Orthologyresponse to bacterium FBgn0052706
GO:0000375
IEA
PLAZA Integrative OrthologyRNA splicing, via transesterification reactions FBgn0030085
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process FBgn0052708
GO:0009987
IEA
PLAZA Integrative Orthologycellular process YNR054C
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization YNR054C
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process FBgn0052708
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus FBgn0052706
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process FBgn0052708
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process YNR054C
GO:0000480
IEA
EggNOGmapperendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0009605
IEA
PLAZA Integrative Orthologyresponse to external stimulus FBgn0052706
GO:0009607
IEA
PLAZA Integrative Orthologyresponse to biotic stimulus FBgn0052706
GO:0043170
IEA
PLAZA Integrative Orthologymacromolecule metabolic process YNR054C
GO:0000478
IEA
PLAZA Integrative Orthologyendonucleolytic cleavage involved in rRNA processing YNR054C
GO:0000479
IEA
EggNOGmapperendonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development FBgn0052708
GO:0007399
IEA
PLAZA Integrative Orthologynervous system development FBgn0052708
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development FBgn0052708
GO:0043207
IEA
PLAZA Integrative Orthologyresponse to external biotic stimulus FBgn0052706
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis YNR054C
GO:0010467
IEA
PLAZA Integrative Orthologygene expression YNR054C
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression FBgn0030085
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization YNR054C
GO:0006807
IEA
PLAZA Integrative Orthologynitrogen compound metabolic process YNR054C
GO:0048731
IEA
PLAZA Integrative Orthologysystem development FBgn0052708
GO:0098542
IEA
PLAZA Integrative Orthologydefense response to other organism FBgn0052706
GO:0042742
IEA
EggNOGmapperdefense response to bacterium
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process YNR054C
GO:0000028
IEA
PLAZA Integrative Orthologyribosomal small subunit assembly YNR054C
GO:0008152
IEA
PLAZA Integrative Orthologymetabolic process YNR054C
GO:0034660
IEA
PLAZA Integrative OrthologyncRNA metabolic process YNR054C
GO:0090305
IEA
PLAZA Integrative Orthologynucleic acid phosphodiester bond hydrolysis YNR054C
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process YNR054C
GO:0000380
IEA
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome FBgn0030085
GO:0000381
IEA
EggNOGmapperregulation of alternative mRNA splicing, via spliceosome
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis YNR054C
GO:0000377
IEA
PLAZA Integrative OrthologyRNA splicing, via transesterification reactions with bulged adenosine as nucleophile FBgn0030085
GO:0044237
IEA
PLAZA Integrative Orthologycellular metabolic process YNR054C
GO:0044238
IEA
PLAZA Integrative Orthologyprimary metabolic process YNR054C
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process FBgn0030085
GO:0006364
IEA
PLAZA Integrative OrthologyrRNA processing YNR054C
GO:0022607
IEA
PLAZA Integrative Orthologycellular component assembly YNR054C
GO:0070925
IEA
PLAZA Integrative Orthologyorganelle assembly YNR054C
GO:0008380
IEA
PLAZA Integrative OrthologyRNA splicing FBgn0030085
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process FBgn0030085
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process FBgn0030085
GO:0071704
IEA
PLAZA Integrative Orthologyorganic substance metabolic process YNR054C
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress FBgn0052706
GO:0006952
IEA
PLAZA Integrative Orthologydefense response FBgn0052706
GO:0006397
IEA
PLAZA Integrative OrthologymRNA processing FBgn0030085
GO:0006396
IEA
PLAZA Integrative OrthologyRNA processing YNR054C
GO:0000447
IEA
EggNOGmapperendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0022613
IEA
PLAZA Integrative Orthologyribonucleoprotein complex biogenesis YNR054C
GO:0000966
IEA
PLAZA Integrative OrthologyRNA 5'-end processing YNR054C
GO:0000967
IEA
PLAZA Integrative OrthologyrRNA 5'-end processing YNR054C
GO:0022618
IEA
PLAZA Integrative Orthologyribonucleoprotein complex assembly YNR054C
GO:1903311
IEA
PLAZA Integrative Orthologyregulation of mRNA metabolic process FBgn0030085
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process FBgn0030085
GO:0071826
IEA
PLAZA Integrative Orthologyribonucleoprotein complex subunit organization YNR054C
GO:0043933
IEA
PLAZA Integrative Orthologyprotein-containing complex subunit organization YNR054C
GO:0051704
IEA
PLAZA Integrative Orthologymulti-organism process FBgn0052706
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process FBgn0030085
GO:0048024
IEA
PLAZA Integrative Orthologyregulation of mRNA splicing, via spliceosome FBgn0030085
GO:0016072
IEA
PLAZA Integrative OrthologyrRNA metabolic process YNR054C
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process FBgn0030085
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process YNR054C
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process YNR054C
GO:0000398
IEA
PLAZA Integrative OrthologymRNA splicing, via spliceosome FBgn0030085
GO:0051707
IEA
PLAZA Integrative Orthologyresponse to other organism FBgn0052706
GO:0030490
IEA
PLAZA Integrative Orthologymaturation of SSU-rRNA YNR054C
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process YNR054C
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process FBgn0030085
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process FBgn0030085
GO:0042274
IEA
PLAZA Integrative Orthologyribosomal small subunit biogenesis YNR054C
GO:0043484
IEA
PLAZA Integrative Orthologyregulation of RNA splicing FBgn0030085
GO:0050684
IEA
PLAZA Integrative Orthologyregulation of mRNA processing FBgn0030085
GO:0000472
IEA
EggNOGmapperendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process YNR054C
GO:0000466
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YNR054C
GO:0000469
IEA
PLAZA Integrative Orthologycleavage involved in rRNA processing YNR054C
GO:0034462
IEA
EggNOGmappersmall-subunit processome assembly
GO:0065003
IEA
PLAZA Integrative Orthologyprotein-containing complex assembly YNR054C
GO:0090501
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis YNR054C
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation FBgn0030085
GO:0090502
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis, endonucleolytic YNR054C
GO:0034622
IEA
PLAZA Integrative Orthologycellular protein-containing complex assembly YNR054C
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process FBgn0030085
GO:0000460
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA YNR054C
GO:0000462
IEA
PLAZA Integrative Orthologymaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YNR054C
GO:0022008
IEA
PLAZA Integrative Orthologyneurogenesis FBgn0052708
GO:0042255
IEA
PLAZA Integrative Orthologyribosome assembly YNR054C
GO:0042254
IEA
PLAZA Integrative Orthologyribosome biogenesis YNR054C
GO:0034470
IEA
PLAZA Integrative OrthologyncRNA processing YNR054C
GO:0034471
IEA
EggNOGmapperncRNA 5'-end processing
GO:0021515
IEA
EggNOGmappercell differentiation in spinal cord
GO:0061458
IEA
EggNOGmapperreproductive system development
GO:0048699
IEA
EggNOGmappergeneration of neurons
GO:0040009
IEA
EggNOGmapperregulation of growth rate
GO:0040011
IEA
EggNOGmapperlocomotion
GO:0009118
IEA
EggNOGmapperregulation of nucleoside metabolic process
GO:0033121
IEA
EggNOGmapperregulation of purine nucleotide catabolic process
GO:0002119
IEA
EggNOGmappernematode larval development
GO:0006366
IEA
EggNOGmappertranscription by RNA polymerase II
GO:0006898
IEA
EggNOGmapperreceptor-mediated endocytosis
GO:0006357
IEA
EggNOGmapperregulation of transcription by RNA polymerase II
GO:0021522
IEA
EggNOGmapperspinal cord motor neuron differentiation
GO:0032781
IEA
EggNOGmapperpositive regulation of ATPase activity
GO:0040010
IEA
EggNOGmapperpositive regulation of growth rate
GO:0007548
IEA
EggNOGmappersex differentiation
GO:0048608
IEA
EggNOGmapperreproductive structure development
GO:0021953
IEA
EggNOGmappercentral nervous system neuron differentiation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0060589
IEA
PLAZA Integrative Orthologynucleoside-triphosphatase regulator activity YNR054C
GO:0098772
IEA
PLAZA Integrative Orthologymolecular function regulator YNR054C
GO:0030234
IEA
PLAZA Integrative Orthologyenzyme regulator activity YNR054C
GO:0003713
IEA
EggNOGmappertranscription coactivator activity
GO:0003712
IEA
PLAZA Integrative Orthologytranscription coregulator activity ENSG00000146109
GO:0008047
IEA
PLAZA Integrative Orthologyenzyme activator activity YNR054C
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000146109
GO:0060590
IEA
PLAZA Integrative OrthologyATPase regulator activity YNR054C
GO:0140110
IEA
PLAZA Integrative Orthologytranscription regulator activity ENSG00000146109
GO:0003723
IEA
EggNOGmapperRNA binding
GO:0001671
IEA
EggNOGmapperATPase activator activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen SPBC28E12.05
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPBC28E12.05
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part SPBC28E12.05
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part SPBC28E12.05
GO:1990904
IEA
PLAZA Integrative Orthologyribonucleoprotein complex YNR054C
GO:0030686
IEA
PLAZA Integrative Orthology90S preribosome YNR054C
GO:0030684
IEA
PLAZA Integrative Orthologypreribosome YNR054C
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex YNR054C
GO:0005737
IEA
EggNOGmappercytoplasm
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPBC28E12.05
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPBC28E12.05
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen SPBC28E12.05
GO:0005730
IEA
EggNOGmappernucleolus
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen SPBC28E12.05
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPBC28E12.05
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part SPBC28E12.05
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle SPBC28E12.05
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen SPBC28E12.05
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPBC28E12.05
GO:0005623
IEA
PLAZA Integrative Orthologycell SPBC28E12.05
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPBC28E12.05
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle SPBC28E12.05
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPBC28E12.05
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPBC28E12.05
GO:0044451
IEA
EggNOGmappernucleoplasm part
GO:0005667
IEA
EggNOGmappertranscription factor complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR034353ABT1/ESF2, RNA recognition motif
IPR000504RNA recognition motif domain

No MapMan annotations defined for this gene.
KeggID Description
K14785ESF2, ABT1; ESF2/ABP1 family protein
No chloroplast target sequence found.